data_5FEQ # _model_server_result.job_id YbvAp8Tqp1HTKXzggjlbcA _model_server_result.datetime_utc '2025-01-07 07:01:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5feq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1101}' # _entry.id 5FEQ # _exptl.entry_id 5FEQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 474.598 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-[1-[(3~{R})-1-[4-(dimethylamino)but-2-enoyl]azepan-3-yl]-7-methyl-benzimidazol-2-yl]-2-methyl-pyridine-4-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5FEQ _cell.length_a 145.715 _cell.length_b 145.715 _cell.length_c 145.715 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5FEQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 103 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 797 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C3 _struct_conn.ptnr2_label_comp_id 5XH _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id 5XH _struct_conn.ptnr2_auth_seq_id 1101 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.928 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C27 H34 N6 O2' _chem_comp.formula_weight 474.598 _chem_comp.id 5XH _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-[1-[(3~{R})-1-[4-(dimethylamino)but-2-enoyl]azepan-3-yl]-7-methyl-benzimidazol-2-yl]-2-methyl-pyridine-4-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N1 5XH sing 1 n n C27 N1 5XH sing 2 n n N1 C2 5XH sing 3 n n C8 C7 5XH sing 4 n n C8 C9 5XH sing 5 n n C24 C23 5XH sing 6 n n C2 C3 5XH sing 7 n n C7 C6 5XH sing 8 n n C4 C3 5XH doub 9 e n C4 C5 5XH sing 10 n n C9 C10 5XH sing 11 n n C10 N3 5XH sing 12 n n C10 C26 5XH sing 13 n n C23 C22 5XH doub 14 n y C23 C25 5XH sing 15 n y C6 N2 5XH sing 16 n n C5 N2 5XH sing 17 n n C5 O2 5XH doub 18 n n N2 C26 5XH sing 19 n n C22 C21 5XH sing 20 n y N3 C25 5XH sing 21 n y N3 C11 5XH sing 22 n y C25 C19 5XH doub 23 n y C21 C20 5XH doub 24 n y C11 N4 5XH sing 25 n n C11 N6 5XH doub 26 n y C19 C20 5XH sing 27 n y C19 N6 5XH sing 28 n y C17 C16 5XH sing 29 n n N4 C12 5XH sing 30 n n C18 C16 5XH doub 31 n y C18 C13 5XH sing 32 n y C16 N5 5XH sing 33 n y C12 C13 5XH sing 34 n n C12 O1 5XH doub 35 n n C13 C14 5XH doub 36 n y N5 C15 5XH doub 37 n y C14 C15 5XH sing 38 n y C1 H1 5XH sing 39 n n C1 H2 5XH sing 40 n n C1 H3 5XH sing 41 n n C2 H4 5XH sing 42 n n C2 H5 5XH sing 43 n n C3 H6 5XH sing 44 n n C14 H8 5XH sing 45 n n C15 H9 5XH sing 46 n n C17 H10 5XH sing 47 n n C17 H11 5XH sing 48 n n C17 H12 5XH sing 49 n n C18 H13 5XH sing 50 n n C20 H14 5XH sing 51 n n C21 H15 5XH sing 52 n n C22 H16 5XH sing 53 n n C24 H17 5XH sing 54 n n C24 H18 5XH sing 55 n n C24 H19 5XH sing 56 n n C26 H20 5XH sing 57 n n C26 H21 5XH sing 58 n n C27 H22 5XH sing 59 n n C27 H23 5XH sing 60 n n C27 H24 5XH sing 61 n n C4 H25 5XH sing 62 n n C10 H28 5XH sing 63 n n C9 H29 5XH sing 64 n n C9 H30 5XH sing 65 n n C8 H31 5XH sing 66 n n C8 H32 5XH sing 67 n n C7 H33 5XH sing 68 n n C6 H34 5XH sing 69 n n N4 H35 5XH sing 70 n n C7 H7 5XH sing 71 n n C6 H26 5XH sing 72 n n # _atom_sites.entry_id 5FEQ _atom_sites.fract_transf_matrix[1][1] 0.006863 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006863 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006863 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5XH A 1 1101 1 5XH LI1 . C 3 HOH A 1 1201 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 5XH . . . B 2 -17.525 -7.758 47.096 1 85.86 ? C1 5XH 1101 A 1 HETATM 2 C C2 5XH . . . B 2 -18.085 -7.997 49.401 1 83.52 ? C2 5XH 1101 A 1 HETATM 3 C C3 5XH . . . B 2 -18.841 -7.05 50.313 1 81.89 ? C3 5XH 1101 A 1 HETATM 4 O O1 5XH . . . B 2 -21.139 2.333 54.057 1 67.42 ? O1 5XH 1101 A 1 HETATM 5 O O2 5XH . . . B 2 -17.976 -4.563 51.288 1 77.75 ? O2 5XH 1101 A 1 HETATM 6 C C11 5XH . . . B 2 -19.649 0.8 52.174 1 59.65 ? C11 5XH 1101 A 1 HETATM 7 C C12 5XH . . . B 2 -21.692 1.395 53.476 1 66.22 ? C12 5XH 1101 A 1 HETATM 8 C C13 5XH . . . B 2 -23.131 1.066 53.738 1 67.06 ? C13 5XH 1101 A 1 HETATM 9 C C14 5XH . . . B 2 -23.727 1.572 54.888 1 68.3 ? C14 5XH 1101 A 1 HETATM 10 C C15 5XH . . . B 2 -25.017 1.189 55.188 1 69.25 ? C15 5XH 1101 A 1 HETATM 11 C C16 5XH . . . B 2 -25.17 -0.125 53.303 1 68.14 ? C16 5XH 1101 A 1 HETATM 12 C C17 5XH . . . B 2 -26.001 -1.061 52.48 1 68.81 ? C17 5XH 1101 A 1 HETATM 13 C C18 5XH . . . B 2 -23.876 0.217 52.922 1 66.23 ? C18 5XH 1101 A 1 HETATM 14 C C19 5XH . . . B 2 -17.584 1.364 52.271 1 55.56 ? C19 5XH 1101 A 1 HETATM 15 C C20 5XH . . . B 2 -16.376 1.928 52.68 1 53.76 ? C20 5XH 1101 A 1 HETATM 16 C C21 5XH . . . B 2 -15.211 1.598 52.009 1 53.09 ? C21 5XH 1101 A 1 HETATM 17 C C22 5XH . . . B 2 -15.241 0.723 50.937 1 53.59 ? C22 5XH 1101 A 1 HETATM 18 C C23 5XH . . . B 2 -16.427 0.12 50.517 1 55.48 ? C23 5XH 1101 A 1 HETATM 19 C C24 5XH . . . B 2 -16.4 -0.871 49.383 1 56.17 ? C24 5XH 1101 A 1 HETATM 20 C C25 5XH . . . B 2 -17.607 0.441 51.201 1 57.05 ? C25 5XH 1101 A 1 HETATM 21 C C26 5XH . . . B 2 -19.502 -2.29 51.199 1 62.48 ? C26 5XH 1101 A 1 HETATM 22 C C27 5XH . . . B 2 -19.168 -9.371 47.775 1 84.68 ? C27 5XH 1101 A 1 HETATM 23 C C5 5XH . . . B 2 -18.977 -4.548 50.571 1 74.86 ? C5 5XH 1101 A 1 HETATM 24 C C4 5XH . . . B 2 -19.233 -5.718 49.649 1 79.33 ? C4 5XH 1101 A 1 HETATM 25 N N1 5XH . . . B 2 -18.6 -8.051 48.044 1 84.9 ? N1 5XH 1101 A 1 HETATM 26 N N2 5XH . . . B 2 -19.933 -3.591 50.684 1 65.56 ? N2 5XH 1101 A 1 HETATM 27 C C10 5XH . . . B 2 -19.55 -1.038 50.288 1 59.49 ? C10 5XH 1101 A 1 HETATM 28 C C9 5XH . . . B 2 -20.922 -0.718 49.658 1 56.33 ? C9 5XH 1101 A 1 HETATM 29 C C8 5XH . . . B 2 -21.498 -1.809 48.769 1 56.91 ? C8 5XH 1101 A 1 HETATM 30 C C7 5XH . . . B 2 -22.128 -3.009 49.487 1 59.86 ? C7 5XH 1101 A 1 HETATM 31 C C6 5XH . . . B 2 -21.376 -3.849 50.533 1 61.59 ? C6 5XH 1101 A 1 HETATM 32 N N3 5XH . . . B 2 -18.987 0.031 51.133 1 59.71 ? N3 5XH 1101 A 1 HETATM 33 N N6 5XH . . . B 2 -18.835 1.591 52.837 1 57.54 ? N6 5XH 1101 A 1 HETATM 34 N N4 5XH . . . B 2 -21.043 0.629 52.528 1 61.96 ? N4 5XH 1101 A 1 HETATM 35 N N5 5XH . . . B 2 -25.743 0.35 54.431 1 69.54 ? N5 5XH 1101 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 236 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 35 #