data_5FEU # _model_server_result.job_id AWVpqKxoQQJM5jNfSLKA_Q _model_server_result.datetime_utc '2024-11-07 13:06:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5feu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5FEU # _exptl.entry_id 5FEU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5FEU _cell.length_a 60.377 _cell.length_b 60.377 _cell.length_c 136.142 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5FEU _symmetry.cell_setting ? _symmetry.Int_Tables_number 93 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 42 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 7_555 y,x,-z+1/2 0 1 0 1 0 0 0 0 -1 0 0 68.071 4 'crystal symmetry operation' 8_555 -y,-x,-z+1/2 0 -1 0 -1 0 0 0 0 -1 0 0 68.071 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 237 n n PA O2A NAP sing 238 n n PA O5B NAP sing 239 n n PA O3 NAP sing 240 n n O2A HOA2 NAP sing 241 n n O5B C5B NAP sing 242 n n C5B C4B NAP sing 243 n n C5B H51A NAP sing 244 n n C5B H52A NAP sing 245 n n C4B O4B NAP sing 246 n n C4B C3B NAP sing 247 n n C4B H4B NAP sing 248 n n O4B C1B NAP sing 249 n n C3B O3B NAP sing 250 n n C3B C2B NAP sing 251 n n C3B H3B NAP sing 252 n n O3B HO3A NAP sing 253 n n C2B O2B NAP sing 254 n n C2B C1B NAP sing 255 n n C2B H2B NAP sing 256 n n O2B P2B NAP sing 257 n n C1B N9A NAP sing 258 n n C1B H1B NAP sing 259 n n N9A C8A NAP sing 260 n y N9A C4A NAP sing 261 n y C8A N7A NAP doub 262 n y C8A H8A NAP sing 263 n n N7A C5A NAP sing 264 n y C5A C6A NAP sing 265 n y C5A C4A NAP doub 266 n y C6A N6A NAP sing 267 n n C6A N1A NAP doub 268 n y N6A H61A NAP sing 269 n n N6A H62A NAP sing 270 n n N1A C2A NAP sing 271 n y C2A N3A NAP doub 272 n y C2A H2A NAP sing 273 n n N3A C4A NAP sing 274 n y O3 PN NAP sing 275 n n PN O1N NAP doub 276 n n PN O2N NAP sing 277 n n PN O5D NAP sing 278 n n O5D C5D NAP sing 279 n n C5D C4D NAP sing 280 n n C5D H51N NAP sing 281 n n C5D H52N NAP sing 282 n n C4D O4D NAP sing 283 n n C4D C3D NAP sing 284 n n C4D H4D NAP sing 285 n n O4D C1D NAP sing 286 n n C3D O3D NAP sing 287 n n C3D C2D NAP sing 288 n n C3D H3D NAP sing 289 n n O3D HO3N NAP sing 290 n n C2D O2D NAP sing 291 n n C2D C1D NAP sing 292 n n C2D H2D NAP sing 293 n n O2D HO2N NAP sing 294 n n C1D N1N NAP sing 295 n n C1D H1D NAP sing 296 n n N1N C2N NAP sing 297 n y N1N C6N NAP doub 298 n y C2N C3N NAP doub 299 n y C2N H2N NAP sing 300 n n C3N C7N NAP sing 301 n n C3N C4N NAP sing 302 n y C7N O7N NAP doub 303 n n C7N N7N NAP sing 304 n n N7N H71N NAP sing 305 n n N7N H72N NAP sing 306 n n C4N C5N NAP doub 307 n y C4N H4N NAP sing 308 n n C5N C6N NAP sing 309 n y C5N H5N NAP sing 310 n n C6N H6N NAP sing 311 n n P2B O1X NAP doub 312 n n P2B O2X NAP sing 313 n n P2B O3X NAP sing 314 n n O2X HOP2 NAP sing 315 n n O3X HOP3 NAP sing 316 n n # _atom_sites.entry_id 5FEU _atom_sites.fract_transf_matrix[1][1] 0.016563 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016563 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007345 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 301 301 NAP NAP . C 3 HOH A 1 401 103 HOH HOH . C 3 HOH A 2 402 136 HOH HOH . C 3 HOH A 3 403 56 HOH HOH . C 3 HOH A 4 404 98 HOH HOH . C 3 HOH A 5 405 133 HOH HOH . C 3 HOH A 6 406 52 HOH HOH . C 3 HOH A 7 407 87 HOH HOH . C 3 HOH A 8 408 101 HOH HOH . C 3 HOH A 9 409 23 HOH HOH . C 3 HOH A 10 410 66 HOH HOH . C 3 HOH A 11 411 28 HOH HOH . C 3 HOH A 12 412 35 HOH HOH . C 3 HOH A 13 413 29 HOH HOH . C 3 HOH A 14 414 7 HOH HOH . C 3 HOH A 15 415 109 HOH HOH . C 3 HOH A 16 416 69 HOH HOH . C 3 HOH A 17 417 16 HOH HOH . C 3 HOH A 18 418 47 HOH HOH . C 3 HOH A 19 419 99 HOH HOH . C 3 HOH A 20 420 1 HOH HOH . C 3 HOH A 21 421 63 HOH HOH . C 3 HOH A 22 422 30 HOH HOH . C 3 HOH A 23 423 53 HOH HOH . C 3 HOH A 24 424 60 HOH HOH . C 3 HOH A 25 425 59 HOH HOH . C 3 HOH A 26 426 10 HOH HOH . C 3 HOH A 27 427 129 HOH HOH . C 3 HOH A 28 428 22 HOH HOH . C 3 HOH A 29 429 50 HOH HOH . C 3 HOH A 30 430 3 HOH HOH . C 3 HOH A 31 431 2 HOH HOH . C 3 HOH A 32 432 118 HOH HOH . C 3 HOH A 33 433 25 HOH HOH . C 3 HOH A 34 434 57 HOH HOH . C 3 HOH A 35 435 4 HOH HOH . C 3 HOH A 36 436 115 HOH HOH . C 3 HOH A 37 437 14 HOH HOH . C 3 HOH A 38 438 68 HOH HOH . C 3 HOH A 39 439 24 HOH HOH . C 3 HOH A 40 440 11 HOH HOH . C 3 HOH A 41 441 112 HOH HOH . C 3 HOH A 42 442 48 HOH HOH . C 3 HOH A 43 443 27 HOH HOH . C 3 HOH A 44 444 122 HOH HOH . C 3 HOH A 45 445 110 HOH HOH . C 3 HOH A 46 446 72 HOH HOH . C 3 HOH A 47 447 5 HOH HOH . C 3 HOH A 48 448 91 HOH HOH . C 3 HOH A 49 449 102 HOH HOH . C 3 HOH A 50 450 135 HOH HOH . C 3 HOH A 51 451 37 HOH HOH . C 3 HOH A 52 452 111 HOH HOH . C 3 HOH A 53 453 104 HOH HOH . C 3 HOH A 54 454 54 HOH HOH . C 3 HOH A 55 455 26 HOH HOH . C 3 HOH A 56 456 38 HOH HOH . C 3 HOH A 57 457 8 HOH HOH . C 3 HOH A 58 458 9 HOH HOH . C 3 HOH A 59 459 19 HOH HOH . C 3 HOH A 60 460 86 HOH HOH . C 3 HOH A 61 461 71 HOH HOH . C 3 HOH A 62 462 17 HOH HOH . C 3 HOH A 63 463 82 HOH HOH . C 3 HOH A 64 464 65 HOH HOH . C 3 HOH A 65 465 125 HOH HOH . C 3 HOH A 66 466 34 HOH HOH . C 3 HOH A 67 467 20 HOH HOH . C 3 HOH A 68 468 6 HOH HOH . C 3 HOH A 69 469 126 HOH HOH . C 3 HOH A 70 470 74 HOH HOH . C 3 HOH A 71 471 55 HOH HOH . C 3 HOH A 72 472 123 HOH HOH . C 3 HOH A 73 473 12 HOH HOH . C 3 HOH A 74 474 13 HOH HOH . C 3 HOH A 75 475 80 HOH HOH . C 3 HOH A 76 476 18 HOH HOH . C 3 HOH A 77 477 70 HOH HOH . C 3 HOH A 78 478 33 HOH HOH . C 3 HOH A 79 479 42 HOH HOH . C 3 HOH A 80 480 15 HOH HOH . C 3 HOH A 81 481 128 HOH HOH . C 3 HOH A 82 482 46 HOH HOH . C 3 HOH A 83 483 36 HOH HOH . C 3 HOH A 84 484 21 HOH HOH . C 3 HOH A 85 485 79 HOH HOH . C 3 HOH A 86 486 41 HOH HOH . C 3 HOH A 87 487 31 HOH HOH . C 3 HOH A 88 488 75 HOH HOH . C 3 HOH A 89 489 40 HOH HOH . C 3 HOH A 90 490 49 HOH HOH . C 3 HOH A 91 491 58 HOH HOH . C 3 HOH A 92 492 73 HOH HOH . C 3 HOH A 93 493 107 HOH HOH . C 3 HOH A 94 494 51 HOH HOH . C 3 HOH A 95 495 45 HOH HOH . C 3 HOH A 96 496 127 HOH HOH . C 3 HOH A 97 497 64 HOH HOH . C 3 HOH A 98 498 32 HOH HOH . C 3 HOH A 99 499 114 HOH HOH . C 3 HOH A 100 500 43 HOH HOH . C 3 HOH A 101 501 92 HOH HOH . C 3 HOH A 102 502 85 HOH HOH . C 3 HOH A 103 503 124 HOH HOH . C 3 HOH A 104 504 97 HOH HOH . C 3 HOH A 105 505 121 HOH HOH . C 3 HOH A 106 506 62 HOH HOH . C 3 HOH A 107 507 61 HOH HOH . C 3 HOH A 108 508 105 HOH HOH . C 3 HOH A 109 509 76 HOH HOH . C 3 HOH A 110 510 84 HOH HOH . C 3 HOH A 111 511 90 HOH HOH . C 3 HOH A 112 512 134 HOH HOH . C 3 HOH A 113 513 39 HOH HOH . C 3 HOH A 114 514 137 HOH HOH . C 3 HOH A 115 515 95 HOH HOH . C 3 HOH A 116 516 108 HOH HOH . C 3 HOH A 117 517 119 HOH HOH . C 3 HOH A 118 518 44 HOH HOH . C 3 HOH A 119 519 67 HOH HOH . C 3 HOH A 120 520 93 HOH HOH . C 3 HOH A 121 521 96 HOH HOH . C 3 HOH A 122 522 113 HOH HOH . C 3 HOH A 123 523 94 HOH HOH . C 3 HOH A 124 524 78 HOH HOH . C 3 HOH A 125 525 81 HOH HOH . C 3 HOH A 126 526 83 HOH HOH . C 3 HOH A 127 527 116 HOH HOH . C 3 HOH A 128 528 117 HOH HOH . C 3 HOH A 129 529 100 HOH HOH . C 3 HOH A 130 530 120 HOH HOH . C 3 HOH A 131 531 130 HOH HOH . C 3 HOH A 132 532 77 HOH HOH . C 3 HOH A 133 533 131 HOH HOH . C 3 HOH A 134 534 89 HOH HOH . C 3 HOH A 135 535 132 HOH HOH . C 3 HOH A 136 536 106 HOH HOH . C 3 HOH A 137 537 88 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . B 2 3.122 20.454 15.302 1 41.16 ? PA NAP 301 A 1 HETATM 2 O O1A NAP . . . B 2 2.136 20.293 14.244 1 42.43 ? O1A NAP 301 A 1 HETATM 3 O O2A NAP . . . B 2 3.011 21.651 16.1 1 41.31 ? O2A NAP 301 A 1 HETATM 4 O O5B NAP . . . B 2 4.573 20.352 14.717 1 35.32 ? O5B NAP 301 A 1 HETATM 5 C C5B NAP . . . B 2 4.874 19.228 13.907 1 32.89 ? C5B NAP 301 A 1 HETATM 6 C C4B NAP . . . B 2 6.228 19.296 13.248 1 32.27 ? C4B NAP 301 A 1 HETATM 7 O O4B NAP . . . B 2 6.479 18.111 12.524 1 32.75 ? O4B NAP 301 A 1 HETATM 8 C C3B NAP . . . B 2 6.259 20.408 12.24 1 30.22 ? C3B NAP 301 A 1 HETATM 9 O O3B NAP . . . B 2 7.6 20.786 12.162 1 31.44 ? O3B NAP 301 A 1 HETATM 10 C C2B NAP . . . B 2 5.926 19.676 10.97 1 31.75 ? C2B NAP 301 A 1 HETATM 11 O O2B NAP . . . B 2 6.352 20.385 9.841 1 36.3 ? O2B NAP 301 A 1 HETATM 12 C C1B NAP . . . B 2 6.675 18.389 11.158 1 35.48 ? C1B NAP 301 A 1 HETATM 13 N N9A NAP . . . B 2 6.103 17.28 10.409 1 32.4 ? N9A NAP 301 A 1 HETATM 14 C C8A NAP . . . B 2 4.845 16.874 10.423 1 32.42 ? C8A NAP 301 A 1 HETATM 15 N N7A NAP . . . B 2 4.673 15.812 9.654 1 33.01 ? N7A NAP 301 A 1 HETATM 16 C C5A NAP . . . B 2 5.846 15.514 9.154 1 33.02 ? C5A NAP 301 A 1 HETATM 17 C C6A NAP . . . B 2 6.369 14.502 8.256 1 32.56 ? C6A NAP 301 A 1 HETATM 18 N N6A NAP . . . B 2 5.554 13.592 7.746 1 33.46 ? N6A NAP 301 A 1 HETATM 19 N N1A NAP . . . B 2 7.663 14.527 7.977 1 33.49 ? N1A NAP 301 A 1 HETATM 20 C C2A NAP . . . B 2 8.463 15.461 8.493 1 35.49 ? C2A NAP 301 A 1 HETATM 21 N N3A NAP . . . B 2 8.065 16.396 9.318 1 35.23 ? N3A NAP 301 A 1 HETATM 22 C C4A NAP . . . B 2 6.794 16.48 9.665 1 31.83 ? C4A NAP 301 A 1 HETATM 23 O O3 NAP . . . B 2 3.058 19.065 16.124 1 32.64 ? O3 NAP 301 A 1 HETATM 24 P PN NAP . . . B 2 3.199 18.944 17.685 1 33.33 ? PN NAP 301 A 1 HETATM 25 O O1N NAP . . . B 2 1.927 19.241 18.254 1 33.38 ? O1N NAP 301 A 1 HETATM 26 O O2N NAP . . . B 2 4.368 19.659 18.15 1 31.82 ? O2N NAP 301 A 1 HETATM 27 O O5D NAP . . . B 2 3.478 17.425 17.986 1 31.39 ? O5D NAP 301 A 1 HETATM 28 C C5D NAP . . . B 2 4.738 16.836 18.097 1 26.09 ? C5D NAP 301 A 1 HETATM 29 C C4D NAP . . . B 2 4.614 15.394 18.583 1 27.47 ? C4D NAP 301 A 1 HETATM 30 O O4D NAP . . . B 2 3.927 15.426 19.804 1 26.2 ? O4D NAP 301 A 1 HETATM 31 C C3D NAP . . . B 2 3.799 14.508 17.655 1 25.04 ? C3D NAP 301 A 1 HETATM 32 O O3D NAP . . . B 2 4.337 13.198 17.635 1 25.51 ? O3D NAP 301 A 1 HETATM 33 C C2D NAP . . . B 2 2.431 14.56 18.292 1 26.48 ? C2D NAP 301 A 1 HETATM 34 O O2D NAP . . . B 2 1.648 13.428 18.027 1 27.45 ? O2D NAP 301 A 1 HETATM 35 C C1D NAP . . . B 2 2.81 14.602 19.753 1 22.62 ? C1D NAP 301 A 1 HETATM 36 N N1N NAP . . . B 2 1.809 15.106 20.668 1 25.74 ? N1N NAP 301 A 1 HETATM 37 C C2N NAP . . . B 2 1.382 16.355 20.639 1 29.67 ? C2N NAP 301 A 1 HETATM 38 C C3N NAP . . . B 2 0.444 16.809 21.539 1 30.48 ? C3N NAP 301 A 1 HETATM 39 C C7N NAP . . . B 2 -0.054 18.217 21.506 1 31.13 ? C7N NAP 301 A 1 HETATM 40 O O7N NAP . . . B 2 -0.958 18.517 22.193 1 29.17 ? O7N NAP 301 A 1 HETATM 41 N N7N NAP . . . B 2 0.526 19.061 20.708 1 34.72 ? N7N NAP 301 A 1 HETATM 42 C C4N NAP . . . B 2 -0.044 15.95 22.493 1 30.44 ? C4N NAP 301 A 1 HETATM 43 C C5N NAP . . . B 2 0.433 14.666 22.525 1 29.62 ? C5N NAP 301 A 1 HETATM 44 C C6N NAP . . . B 2 1.372 14.291 21.593 1 25.69 ? C6N NAP 301 A 1 HETATM 45 P P2B NAP . . . B 2 5.678 20.154 8.428 1 36.03 ? P2B NAP 301 A 1 HETATM 46 O O1X NAP . . . B 2 6.271 18.967 7.909 1 32.13 ? O1X NAP 301 A 1 HETATM 47 O O2X NAP . . . B 2 6.139 21.351 7.757 1 38.19 ? O2X NAP 301 A 1 HETATM 48 O O3X NAP . . . B 2 4.254 20.103 8.614 1 33.88 ? O3X NAP 301 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #