data_5FFL # _model_server_result.job_id IbyA3pyCCNrr4oHZpjMNqw _model_server_result.datetime_utc '2024-11-26 15:26:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ffl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 5FFL # _exptl.entry_id 5FFL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment 'OPG RESIDUES 22-197' _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5FFL _cell.length_a 27.633 _cell.length_b 53.347 _cell.length_c 70.516 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5FFL _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 A CYS 22 1_555 A SG CYS 91 A CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf2 A SG CYS 37 A CYS 36 1_555 A SG CYS 45 A CYS 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc1 A O LYS 95 A LYS 94 1_555 C NA NA . A NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc2 A O GLY 97 A GLY 96 1_555 C NA NA . A NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc3 A OD1 ASP 99 A ASP 98 1_555 C NA NA . A NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc4 B O3S EPE . A EPE 201 1_555 C NA NA . A NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc5 C NA NA . A NA 202 1_555 F O HOH . A HOH 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 83 n n N1 C6 EPE sing 84 n n N1 C9 EPE sing 85 n n C2 C3 EPE sing 86 n n C2 H21 EPE sing 87 n n C2 H22 EPE sing 88 n n C3 N4 EPE sing 89 n n C3 H31 EPE sing 90 n n C3 H32 EPE sing 91 n n N4 C5 EPE sing 92 n n N4 C7 EPE sing 93 n n C5 C6 EPE sing 94 n n C5 H51 EPE sing 95 n n C5 H52 EPE sing 96 n n C6 H61 EPE sing 97 n n C6 H62 EPE sing 98 n n C7 C8 EPE sing 99 n n C7 H71 EPE sing 100 n n C7 H72 EPE sing 101 n n C8 O8 EPE sing 102 n n C8 H81 EPE sing 103 n n C8 H82 EPE sing 104 n n O8 HO8 EPE sing 105 n n C9 C10 EPE sing 106 n n C9 H91 EPE sing 107 n n C9 H92 EPE sing 108 n n C10 S EPE sing 109 n n C10 H101 EPE sing 110 n n C10 H102 EPE sing 111 n n S O1S EPE doub 112 n n S O2S EPE doub 113 n n S O3S EPE sing 114 n n O3S HOS3 EPE sing 115 n n # _atom_sites.entry_id 5FFL _atom_sites.fract_transf_matrix[1][1] 0.036189 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018745 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014181 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EPE A 1 201 1 EPE EPE . C 3 NA A 1 202 1 NA NA . D 4 MPD A 1 203 1 MPD MPD . E 4 MPD A 1 204 2 MPD MPD . F 5 HOH A 1 301 62 HOH HOH . F 5 HOH A 2 302 50 HOH HOH . F 5 HOH A 3 303 78 HOH HOH . F 5 HOH A 4 304 31 HOH HOH . F 5 HOH A 5 305 6 HOH HOH . F 5 HOH A 6 306 36 HOH HOH . F 5 HOH A 7 307 61 HOH HOH . F 5 HOH A 8 308 71 HOH HOH . F 5 HOH A 9 309 112 HOH HOH . F 5 HOH A 10 310 40 HOH HOH . F 5 HOH A 11 311 51 HOH HOH . F 5 HOH A 12 312 55 HOH HOH . F 5 HOH A 13 313 17 HOH HOH . F 5 HOH A 14 314 2 HOH HOH . F 5 HOH A 15 315 18 HOH HOH . F 5 HOH A 16 316 9 HOH HOH . F 5 HOH A 17 317 49 HOH HOH . F 5 HOH A 18 318 60 HOH HOH . F 5 HOH A 19 319 102 HOH HOH . F 5 HOH A 20 320 4 HOH HOH . F 5 HOH A 21 321 84 HOH HOH . F 5 HOH A 22 322 89 HOH HOH . F 5 HOH A 23 323 105 HOH HOH . F 5 HOH A 24 324 109 HOH HOH . F 5 HOH A 25 325 93 HOH HOH . F 5 HOH A 26 326 14 HOH HOH . F 5 HOH A 27 327 7 HOH HOH . F 5 HOH A 28 328 76 HOH HOH . F 5 HOH A 29 329 53 HOH HOH . F 5 HOH A 30 330 88 HOH HOH . F 5 HOH A 31 331 83 HOH HOH . F 5 HOH A 32 332 106 HOH HOH . F 5 HOH A 33 333 79 HOH HOH . F 5 HOH A 34 334 81 HOH HOH . F 5 HOH A 35 335 10 HOH HOH . F 5 HOH A 36 336 56 HOH HOH . F 5 HOH A 37 337 21 HOH HOH . F 5 HOH A 38 338 103 HOH HOH . F 5 HOH A 39 339 5 HOH HOH . F 5 HOH A 40 340 8 HOH HOH . F 5 HOH A 41 341 107 HOH HOH . F 5 HOH A 42 342 29 HOH HOH . F 5 HOH A 43 343 32 HOH HOH . F 5 HOH A 44 344 58 HOH HOH . F 5 HOH A 45 345 110 HOH HOH . F 5 HOH A 46 346 3 HOH HOH . F 5 HOH A 47 347 19 HOH HOH . F 5 HOH A 48 348 30 HOH HOH . F 5 HOH A 49 349 12 HOH HOH . F 5 HOH A 50 350 59 HOH HOH . F 5 HOH A 51 351 52 HOH HOH . F 5 HOH A 52 352 15 HOH HOH . F 5 HOH A 53 353 35 HOH HOH . F 5 HOH A 54 354 47 HOH HOH . F 5 HOH A 55 355 24 HOH HOH . F 5 HOH A 56 356 25 HOH HOH . F 5 HOH A 57 357 64 HOH HOH . F 5 HOH A 58 358 43 HOH HOH . F 5 HOH A 59 359 67 HOH HOH . F 5 HOH A 60 360 54 HOH HOH . F 5 HOH A 61 361 74 HOH HOH . F 5 HOH A 62 362 27 HOH HOH . F 5 HOH A 63 363 11 HOH HOH . F 5 HOH A 64 364 111 HOH HOH . F 5 HOH A 65 365 1 HOH HOH . F 5 HOH A 66 366 16 HOH HOH . F 5 HOH A 67 367 22 HOH HOH . F 5 HOH A 68 368 82 HOH HOH . F 5 HOH A 69 369 20 HOH HOH . F 5 HOH A 70 370 92 HOH HOH . F 5 HOH A 71 371 37 HOH HOH . F 5 HOH A 72 372 65 HOH HOH . F 5 HOH A 73 373 41 HOH HOH . F 5 HOH A 74 374 104 HOH HOH . F 5 HOH A 75 375 23 HOH HOH . F 5 HOH A 76 376 77 HOH HOH . F 5 HOH A 77 377 13 HOH HOH . F 5 HOH A 78 378 26 HOH HOH . F 5 HOH A 79 379 94 HOH HOH . F 5 HOH A 80 380 72 HOH HOH . F 5 HOH A 81 381 46 HOH HOH . F 5 HOH A 82 382 44 HOH HOH . F 5 HOH A 83 383 80 HOH HOH . F 5 HOH A 84 384 75 HOH HOH . F 5 HOH A 85 385 34 HOH HOH . F 5 HOH A 86 386 73 HOH HOH . F 5 HOH A 87 387 48 HOH HOH . F 5 HOH A 88 388 39 HOH HOH . F 5 HOH A 89 389 57 HOH HOH . F 5 HOH A 90 390 86 HOH HOH . F 5 HOH A 91 391 114 HOH HOH . F 5 HOH A 92 392 96 HOH HOH . F 5 HOH A 93 393 101 HOH HOH . F 5 HOH A 94 394 100 HOH HOH . F 5 HOH A 95 395 33 HOH HOH . F 5 HOH A 96 396 28 HOH HOH . F 5 HOH A 97 397 90 HOH HOH . F 5 HOH A 98 398 99 HOH HOH . F 5 HOH A 99 399 70 HOH HOH . F 5 HOH A 100 400 97 HOH HOH . F 5 HOH A 101 401 69 HOH HOH . F 5 HOH A 102 402 68 HOH HOH . F 5 HOH A 103 403 91 HOH HOH . F 5 HOH A 104 404 38 HOH HOH . F 5 HOH A 105 405 45 HOH HOH . F 5 HOH A 106 406 87 HOH HOH . F 5 HOH A 107 407 63 HOH HOH . F 5 HOH A 108 408 85 HOH HOH . F 5 HOH A 109 409 98 HOH HOH . F 5 HOH A 110 410 113 HOH HOH . F 5 HOH A 111 411 108 HOH HOH . F 5 HOH A 112 412 42 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . B 2 -5.351 24.242 14.6 1 34.25 ? N1 EPE 201 A 1 HETATM 2 C C2 EPE . . . B 2 -4.026 23.852 15.114 1 32.4 ? C2 EPE 201 A 1 HETATM 3 C C3 EPE . . . B 2 -3.864 22.339 15.013 1 37.19 ? C3 EPE 201 A 1 HETATM 4 N N4 EPE . . . B 2 -4.976 21.615 15.627 1 43.98 ? N4 EPE 201 A 1 HETATM 5 C C5 EPE . . . B 2 -6.307 22.119 15.35 1 36.04 ? C5 EPE 201 A 1 HETATM 6 C C6 EPE . . . B 2 -6.365 23.634 15.478 1 36.81 ? C6 EPE 201 A 1 HETATM 7 C C7 EPE . . . B 2 -4.874 20.172 15.699 1 43.2 ? C7 EPE 201 A 1 HETATM 8 C C8 EPE . . . B 2 -4.013 19.684 16.841 1 50 ? C8 EPE 201 A 1 HETATM 9 O O8 EPE . . . B 2 -4.769 19.671 18.047 1 41.62 ? O8 EPE 201 A 1 HETATM 10 C C9 EPE . . . B 2 -5.616 25.694 14.492 1 34.13 ? C9 EPE 201 A 1 HETATM 11 C C10 EPE . . . B 2 -5.277 26.512 15.736 1 35.49 ? C10 EPE 201 A 1 HETATM 12 S S EPE . . . B 2 -6.721 27.107 16.666 1 32.58 ? S EPE 201 A 1 HETATM 13 O O1S EPE . . . B 2 -7.797 27.467 15.767 1 34.83 ? O1S EPE 201 A 1 HETATM 14 O O2S EPE . . . B 2 -6.326 28.299 17.407 1 35.58 ? O2S EPE 201 A 1 HETATM 15 O O3S EPE . . . B 2 -7.168 26.043 17.546 1 34.65 ? O3S EPE 201 A 1 HETATM 16 H H21 EPE . . . B 2 -3.928 24.164 16.154 1 38.88 ? H21 EPE 201 A 1 HETATM 17 H H22 EPE . . . B 2 -3.246 24.346 14.536 1 38.88 ? H22 EPE 201 A 1 HETATM 18 H H31 EPE . . . B 2 -2.934 22.046 15.5 1 44.63 ? H31 EPE 201 A 1 HETATM 19 H H32 EPE . . . B 2 -3.789 22.057 13.963 1 44.63 ? H32 EPE 201 A 1 HETATM 20 H H51 EPE . . . B 2 -7.017 21.67 16.045 1 43.25 ? H51 EPE 201 A 1 HETATM 21 H H52 EPE . . . B 2 -6.601 21.83 14.34 1 43.25 ? H52 EPE 201 A 1 HETATM 22 H H61 EPE . . . B 2 -7.356 23.99 15.198 1 44.17 ? H61 EPE 201 A 1 HETATM 23 H H62 EPE . . . B 2 -6.178 23.924 16.512 1 44.17 ? H62 EPE 201 A 1 HETATM 24 H H71 EPE . . . B 2 -4.461 19.8 14.761 1 51.84 ? H71 EPE 201 A 1 HETATM 25 H H72 EPE . . . B 2 -5.874 19.752 15.804 1 51.84 ? H72 EPE 201 A 1 HETATM 26 H H81 EPE . . . B 2 -3.15 20.339 16.956 1 60 ? H81 EPE 201 A 1 HETATM 27 H H82 EPE . . . B 2 -3.651 18.679 16.624 1 60 ? H82 EPE 201 A 1 HETATM 28 H HO8 EPE . . . B 2 -5.68 19.982 17.865 1 49.94 ? HO8 EPE 201 A 1 HETATM 29 H H91 EPE . . . B 2 -6.671 25.838 14.259 1 40.96 ? H91 EPE 201 A 1 HETATM 30 H H92 EPE . . . B 2 -5.046 26.089 13.651 1 40.96 ? H92 EPE 201 A 1 HETATM 31 H H101 EPE . . . B 2 -4.676 27.371 15.437 1 42.58 ? H101 EPE 201 A 1 HETATM 32 H H102 EPE . . . B 2 -4.661 25.903 16.398 1 42.58 ? H102 EPE 201 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 247 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 32 #