data_5FFL
#
_model_server_result.job_id            PlEFBR4A0aPQ9BjOa5XQ8w 
_model_server_result.datetime_utc      '2024-11-30 01:18:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ffl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":203}' 
#
_entry.id    5FFL 
#
_exptl.entry_id    5FFL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4S)-2-METHYL-2,4-PENTANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5FFL 
_cell.length_a            27.633 
_cell.length_b            53.347 
_cell.length_c            70.516 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5FFL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 23 A CYS 22 1_555 A SG CYS 91 A CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf2 A SG CYS 37 A CYS 36 1_555 A SG CYS 45 A CYS 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
metalc ? metalc1 A O LYS 95 A LYS 94 1_555 C NA NA . A NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? 
metalc ? metalc2 A O GLY 97 A GLY 96 1_555 C NA NA . A NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? 
metalc ? metalc3 A OD1 ASP 99 A ASP 98 1_555 C NA NA . A NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? 
metalc ? metalc4 B O3S EPE . A EPE 201 1_555 C NA NA . A NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? 
metalc ? metalc5 C NA NA . A NA 202 1_555 F O HOH . A HOH 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                MPD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4S)-2-METHYL-2,4-PENTANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MPD sing 249 n n 
C1 H11 MPD sing 250 n n 
C1 H12 MPD sing 251 n n 
C1 H13 MPD sing 252 n n 
C2 O2 MPD sing 253 n n 
C2 CM MPD sing 254 n n 
C2 C3 MPD sing 255 n n 
O2 HO2 MPD sing 256 n n 
CM HM1 MPD sing 257 n n 
CM HM2 MPD sing 258 n n 
CM HM3 MPD sing 259 n n 
C3 C4 MPD sing 260 n n 
C3 H31 MPD sing 261 n n 
C3 H32 MPD sing 262 n n 
C4 O4 MPD sing 263 n n 
C4 C5 MPD sing 264 n n 
C4 H4 MPD sing 265 n n 
O4 HO4 MPD sing 266 n n 
C5 H51 MPD sing 267 n n 
C5 H52 MPD sing 268 n n 
C5 H53 MPD sing 269 n n 
#
_atom_sites.entry_id                     5FFL 
_atom_sites.fract_transf_matrix[1][1]    0.036189 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018745 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014181 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 EPE A 1 201 1 EPE EPE . 
C 3 NA A 1 202 1 NA NA . 
D 4 MPD A 1 203 1 MPD MPD . 
E 4 MPD A 1 204 2 MPD MPD . 
F 5 HOH A 1 301 62 HOH HOH . 
F 5 HOH A 2 302 50 HOH HOH . 
F 5 HOH A 3 303 78 HOH HOH . 
F 5 HOH A 4 304 31 HOH HOH . 
F 5 HOH A 5 305 6 HOH HOH . 
F 5 HOH A 6 306 36 HOH HOH . 
F 5 HOH A 7 307 61 HOH HOH . 
F 5 HOH A 8 308 71 HOH HOH . 
F 5 HOH A 9 309 112 HOH HOH . 
F 5 HOH A 10 310 40 HOH HOH . 
F 5 HOH A 11 311 51 HOH HOH . 
F 5 HOH A 12 312 55 HOH HOH . 
F 5 HOH A 13 313 17 HOH HOH . 
F 5 HOH A 14 314 2 HOH HOH . 
F 5 HOH A 15 315 18 HOH HOH . 
F 5 HOH A 16 316 9 HOH HOH . 
F 5 HOH A 17 317 49 HOH HOH . 
F 5 HOH A 18 318 60 HOH HOH . 
F 5 HOH A 19 319 102 HOH HOH . 
F 5 HOH A 20 320 4 HOH HOH . 
F 5 HOH A 21 321 84 HOH HOH . 
F 5 HOH A 22 322 89 HOH HOH . 
F 5 HOH A 23 323 105 HOH HOH . 
F 5 HOH A 24 324 109 HOH HOH . 
F 5 HOH A 25 325 93 HOH HOH . 
F 5 HOH A 26 326 14 HOH HOH . 
F 5 HOH A 27 327 7 HOH HOH . 
F 5 HOH A 28 328 76 HOH HOH . 
F 5 HOH A 29 329 53 HOH HOH . 
F 5 HOH A 30 330 88 HOH HOH . 
F 5 HOH A 31 331 83 HOH HOH . 
F 5 HOH A 32 332 106 HOH HOH . 
F 5 HOH A 33 333 79 HOH HOH . 
F 5 HOH A 34 334 81 HOH HOH . 
F 5 HOH A 35 335 10 HOH HOH . 
F 5 HOH A 36 336 56 HOH HOH . 
F 5 HOH A 37 337 21 HOH HOH . 
F 5 HOH A 38 338 103 HOH HOH . 
F 5 HOH A 39 339 5 HOH HOH . 
F 5 HOH A 40 340 8 HOH HOH . 
F 5 HOH A 41 341 107 HOH HOH . 
F 5 HOH A 42 342 29 HOH HOH . 
F 5 HOH A 43 343 32 HOH HOH . 
F 5 HOH A 44 344 58 HOH HOH . 
F 5 HOH A 45 345 110 HOH HOH . 
F 5 HOH A 46 346 3 HOH HOH . 
F 5 HOH A 47 347 19 HOH HOH . 
F 5 HOH A 48 348 30 HOH HOH . 
F 5 HOH A 49 349 12 HOH HOH . 
F 5 HOH A 50 350 59 HOH HOH . 
F 5 HOH A 51 351 52 HOH HOH . 
F 5 HOH A 52 352 15 HOH HOH . 
F 5 HOH A 53 353 35 HOH HOH . 
F 5 HOH A 54 354 47 HOH HOH . 
F 5 HOH A 55 355 24 HOH HOH . 
F 5 HOH A 56 356 25 HOH HOH . 
F 5 HOH A 57 357 64 HOH HOH . 
F 5 HOH A 58 358 43 HOH HOH . 
F 5 HOH A 59 359 67 HOH HOH . 
F 5 HOH A 60 360 54 HOH HOH . 
F 5 HOH A 61 361 74 HOH HOH . 
F 5 HOH A 62 362 27 HOH HOH . 
F 5 HOH A 63 363 11 HOH HOH . 
F 5 HOH A 64 364 111 HOH HOH . 
F 5 HOH A 65 365 1 HOH HOH . 
F 5 HOH A 66 366 16 HOH HOH . 
F 5 HOH A 67 367 22 HOH HOH . 
F 5 HOH A 68 368 82 HOH HOH . 
F 5 HOH A 69 369 20 HOH HOH . 
F 5 HOH A 70 370 92 HOH HOH . 
F 5 HOH A 71 371 37 HOH HOH . 
F 5 HOH A 72 372 65 HOH HOH . 
F 5 HOH A 73 373 41 HOH HOH . 
F 5 HOH A 74 374 104 HOH HOH . 
F 5 HOH A 75 375 23 HOH HOH . 
F 5 HOH A 76 376 77 HOH HOH . 
F 5 HOH A 77 377 13 HOH HOH . 
F 5 HOH A 78 378 26 HOH HOH . 
F 5 HOH A 79 379 94 HOH HOH . 
F 5 HOH A 80 380 72 HOH HOH . 
F 5 HOH A 81 381 46 HOH HOH . 
F 5 HOH A 82 382 44 HOH HOH . 
F 5 HOH A 83 383 80 HOH HOH . 
F 5 HOH A 84 384 75 HOH HOH . 
F 5 HOH A 85 385 34 HOH HOH . 
F 5 HOH A 86 386 73 HOH HOH . 
F 5 HOH A 87 387 48 HOH HOH . 
F 5 HOH A 88 388 39 HOH HOH . 
F 5 HOH A 89 389 57 HOH HOH . 
F 5 HOH A 90 390 86 HOH HOH . 
F 5 HOH A 91 391 114 HOH HOH . 
F 5 HOH A 92 392 96 HOH HOH . 
F 5 HOH A 93 393 101 HOH HOH . 
F 5 HOH A 94 394 100 HOH HOH . 
F 5 HOH A 95 395 33 HOH HOH . 
F 5 HOH A 96 396 28 HOH HOH . 
F 5 HOH A 97 397 90 HOH HOH . 
F 5 HOH A 98 398 99 HOH HOH . 
F 5 HOH A 99 399 70 HOH HOH . 
F 5 HOH A 100 400 97 HOH HOH . 
F 5 HOH A 101 401 69 HOH HOH . 
F 5 HOH A 102 402 68 HOH HOH . 
F 5 HOH A 103 403 91 HOH HOH . 
F 5 HOH A 104 404 38 HOH HOH . 
F 5 HOH A 105 405 45 HOH HOH . 
F 5 HOH A 106 406 87 HOH HOH . 
F 5 HOH A 107 407 63 HOH HOH . 
F 5 HOH A 108 408 85 HOH HOH . 
F 5 HOH A 109 409 98 HOH HOH . 
F 5 HOH A 110 410 113 HOH HOH . 
F 5 HOH A 111 411 108 HOH HOH . 
F 5 HOH A 112 412 42 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MPD . . . D 4 -4.545 25.694 4.953 1 48.9 ? C1 MPD 203 A 1 
HETATM 2 C C2 MPD . . . D 4 -5.586 24.765 4.326 1 47.94 ? C2 MPD 203 A 1 
HETATM 3 O O2 MPD . . . D 4 -5.758 23.628 5.211 1 53.01 ? O2 MPD 203 A 1 
HETATM 4 C CM MPD . . . D 4 -6.945 25.446 4.137 1 43.35 ? CM MPD 203 A 1 
HETATM 5 C C3 MPD . . . D 4 -5.167 24.251 2.96 1 45.76 ? C3 MPD 203 A 1 
HETATM 6 C C4 MPD . . . D 4 -3.723 23.767 2.758 1 59.7 ? C4 MPD 203 A 1 
HETATM 7 O O4 MPD . . . D 4 -2.992 24.853 2.22 1 61.33 ? O4 MPD 203 A 1 
HETATM 8 C C5 MPD . . . D 4 -2.981 23.181 3.966 1 53.69 ? C5 MPD 203 A 1 
HETATM 9 H H11 MPD . . . D 4 -3.697 25.8 4.276 1 58.68 ? H11 MPD 203 A 1 
HETATM 10 H H12 MPD . . . D 4 -4.204 25.273 5.899 1 58.68 ? H12 MPD 203 A 1 
HETATM 11 H H13 MPD . . . D 4 -4.992 26.672 5.131 1 58.68 ? H13 MPD 203 A 1 
HETATM 12 H HO2 MPD . . . D 4 -5.565 22.801 4.722 1 63.61 ? HO2 MPD 203 A 1 
HETATM 13 H HM1 MPD . . . D 4 -7.242 25.38 3.09 1 52.02 ? HM1 MPD 203 A 1 
HETATM 14 H HM2 MPD . . . D 4 -6.87 26.494 4.427 1 52.02 ? HM2 MPD 203 A 1 
HETATM 15 H HM3 MPD . . . D 4 -7.69 24.949 4.758 1 52.02 ? HM3 MPD 203 A 1 
HETATM 16 H H31 MPD . . . D 4 -5.833 23.428 2.697 1 54.91 ? H31 MPD 203 A 1 
HETATM 17 H H32 MPD . . . D 4 -5.356 25.043 2.236 1 54.91 ? H32 MPD 203 A 1 
HETATM 18 H H4 MPD . . . D 4 -3.76 22.981 2.004 1 71.65 ? H4 MPD 203 A 1 
HETATM 19 H HO4 MPD . . . D 4 -2.338 25.166 2.879 1 73.6 ? HO4 MPD 203 A 1 
HETATM 20 H H51 MPD . . . D 4 -2.059 23.739 4.131 1 64.43 ? H51 MPD 203 A 1 
HETATM 21 H H52 MPD . . . D 4 -2.743 22.135 3.774 1 64.43 ? H52 MPD 203 A 1 
HETATM 22 H H53 MPD . . . D 4 -3.613 23.254 4.851 1 64.43 ? H53 MPD 203 A 1 
#
_model_server_stats.io_time_ms              61 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           250 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           22 
#