data_5FFR # _model_server_result.job_id g_vVpnWFx3CEmYoWt_uGRQ _model_server_result.datetime_utc '2025-02-05 07:47:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ffr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 5FFR # _exptl.entry_id 5FFR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5FFR _cell.length_a 97.349 _cell.length_b 97.349 _cell.length_c 44.645 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5FFR _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 97.349 0 0 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 48.6745 84.306707 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 55 A CYS 135 1_555 A SG CYS 146 A CYS 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 124 A CYS 204 1_555 A SG CYS 138 A CYS 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? covale ? covale1 A C SER 30 A SER 110 1_555 A N SME 31 A SME 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C SME 31 A SME 111 1_555 A N LEU 32 A LEU 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 A C GLU 53 A GLU 133 1_555 A N SME 54 A SME 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 A C SME 54 A SME 134 1_555 A N CYS 55 A CYS 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? metalc ? metalc1 A OE1 GLU 91 A GLU 171 1_555 D NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? metalc ? metalc2 A OE2 GLU 91 A GLU 171 1_555 D NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.108 ? metalc ? metalc3 A OE1 GLU 115 A GLU 195 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc4 A O GLU 122 A GLU 202 1_555 D NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.003 ? metalc ? metalc5 A OE1 GLU 122 A GLU 202 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? metalc ? metalc6 A OD1 ASN 134 A ASN 214 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc7 A O ASP 135 A ASP 215 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc8 A OD1 ASP 135 A ASP 215 1_555 B CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc9 A OD2 ASP 135 A ASP 215 1_555 D NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.179 ? metalc ? metalc10 B CA CA . A CA 301 1_555 E O HOH . A HOH 433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc11 B CA CA . A CA 301 1_555 E O HOH . A HOH 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5FFR _atom_sites.fract_transf_matrix[1][1] 0.010272 _atom_sites.fract_transf_matrix[1][2] 0.005931 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011861 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022399 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 301 1 CA CA . C 3 PC A 1 302 500 PC PC . D 4 NA A 1 303 1 NA NA . E 5 HOH A 1 401 42 HOH HOH . E 5 HOH A 2 402 48 HOH HOH . E 5 HOH A 3 403 16 HOH HOH . E 5 HOH A 4 404 152 HOH HOH . E 5 HOH A 5 405 10 HOH HOH . E 5 HOH A 6 406 96 HOH HOH . E 5 HOH A 7 407 27 HOH HOH . E 5 HOH A 8 408 35 HOH HOH . E 5 HOH A 9 409 13 HOH HOH . E 5 HOH A 10 410 91 HOH HOH . E 5 HOH A 11 411 15 HOH HOH . E 5 HOH A 12 412 34 HOH HOH . E 5 HOH A 13 413 44 HOH HOH . E 5 HOH A 14 414 46 HOH HOH . E 5 HOH A 15 415 49 HOH HOH . E 5 HOH A 16 416 151 HOH HOH . E 5 HOH A 17 417 148 HOH HOH . E 5 HOH A 18 418 28 HOH HOH . E 5 HOH A 19 419 3 HOH HOH . E 5 HOH A 20 420 7 HOH HOH . E 5 HOH A 21 421 36 HOH HOH . E 5 HOH A 22 422 4 HOH HOH . E 5 HOH A 23 423 32 HOH HOH . E 5 HOH A 24 424 85 HOH HOH . E 5 HOH A 25 425 2 HOH HOH . E 5 HOH A 26 426 150 HOH HOH . E 5 HOH A 27 427 17 HOH HOH . E 5 HOH A 28 428 18 HOH HOH . E 5 HOH A 29 429 37 HOH HOH . E 5 HOH A 30 430 149 HOH HOH . E 5 HOH A 31 431 51 HOH HOH . E 5 HOH A 32 432 29 HOH HOH . E 5 HOH A 33 433 1 HOH HOH . E 5 HOH A 34 434 60 HOH HOH . E 5 HOH A 35 435 24 HOH HOH . E 5 HOH A 36 436 45 HOH HOH . E 5 HOH A 37 437 50 HOH HOH . E 5 HOH A 38 438 57 HOH HOH . E 5 HOH A 39 439 19 HOH HOH . E 5 HOH A 40 440 26 HOH HOH . E 5 HOH A 41 441 89 HOH HOH . E 5 HOH A 42 442 87 HOH HOH . E 5 HOH A 43 443 22 HOH HOH . E 5 HOH A 44 444 8 HOH HOH . E 5 HOH A 45 445 25 HOH HOH . E 5 HOH A 46 446 70 HOH HOH . E 5 HOH A 47 447 47 HOH HOH . E 5 HOH A 48 448 6 HOH HOH . E 5 HOH A 49 449 58 HOH HOH . E 5 HOH A 50 450 74 HOH HOH . E 5 HOH A 51 451 68 HOH HOH . E 5 HOH A 52 452 54 HOH HOH . E 5 HOH A 53 453 41 HOH HOH . E 5 HOH A 54 454 5 HOH HOH . E 5 HOH A 55 455 14 HOH HOH . E 5 HOH A 56 456 126 HOH HOH . E 5 HOH A 57 457 31 HOH HOH . E 5 HOH A 58 458 11 HOH HOH . E 5 HOH A 59 459 12 HOH HOH . E 5 HOH A 60 460 40 HOH HOH . E 5 HOH A 61 461 53 HOH HOH . E 5 HOH A 62 462 109 HOH HOH . E 5 HOH A 63 463 78 HOH HOH . E 5 HOH A 64 464 30 HOH HOH . E 5 HOH A 65 465 71 HOH HOH . E 5 HOH A 66 466 77 HOH HOH . E 5 HOH A 67 467 86 HOH HOH . E 5 HOH A 68 468 23 HOH HOH . E 5 HOH A 69 469 20 HOH HOH . E 5 HOH A 70 470 69 HOH HOH . E 5 HOH A 71 471 102 HOH HOH . E 5 HOH A 72 472 33 HOH HOH . E 5 HOH A 73 473 122 HOH HOH . E 5 HOH A 74 474 52 HOH HOH . E 5 HOH A 75 475 147 HOH HOH . E 5 HOH A 76 476 21 HOH HOH . E 5 HOH A 77 477 94 HOH HOH . E 5 HOH A 78 478 90 HOH HOH . E 5 HOH A 79 479 107 HOH HOH . E 5 HOH A 80 480 79 HOH HOH . E 5 HOH A 81 481 88 HOH HOH . E 5 HOH A 82 482 142 HOH HOH . E 5 HOH A 83 483 110 HOH HOH . E 5 HOH A 84 484 62 HOH HOH . E 5 HOH A 85 485 65 HOH HOH . E 5 HOH A 86 486 75 HOH HOH . E 5 HOH A 87 487 99 HOH HOH . E 5 HOH A 88 488 146 HOH HOH . E 5 HOH A 89 489 43 HOH HOH . E 5 HOH A 90 490 63 HOH HOH . E 5 HOH A 91 491 76 HOH HOH . E 5 HOH A 92 492 55 HOH HOH . E 5 HOH A 93 493 64 HOH HOH . E 5 HOH A 94 494 39 HOH HOH . E 5 HOH A 95 495 66 HOH HOH . E 5 HOH A 96 496 138 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 85.903 _atom_site.Cartn_y 31.882 _atom_site.Cartn_z 43.501 _atom_site.occupancy 0.92 _atom_site.B_iso_or_equiv 40.54 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 303 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #