data_5FFV # _model_server_result.job_id fkXcFGQUJe7QaFQ8C7jtbQ _model_server_result.datetime_utc '2024-11-29 15:39:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ffv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":801}' # _entry.id 5FFV # _exptl.entry_id 5FFV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5FFV _cell.length_a 74.266 _cell.length_b 74.354 _cell.length_c 49.509 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5FFV _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,H,J 1 1 B,D,G,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C GLY 5 C GLY 13 1_555 C N ALY 6 C ALY 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale2 C C ALY 6 C ALY 14 1_555 C N ALA 7 C ALA 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 D C GLY 5 D GLY 13 1_555 D N ALY 6 D ALY 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 D C ALY 6 D ALY 14 1_555 D N ALA 7 D ALA 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 111 n n C1 C2 EDO sing 112 n n C1 H11 EDO sing 113 n n C1 H12 EDO sing 114 n n O1 HO1 EDO sing 115 n n C2 O2 EDO sing 116 n n C2 H21 EDO sing 117 n n C2 H22 EDO sing 118 n n O2 HO2 EDO sing 119 n n # _atom_sites.entry_id 5FFV _atom_sites.fract_transf_matrix[1][1] 0.013465 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013449 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020198 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 EDO A 1 801 1 EDO EDO . F 3 EDO A 1 802 2 EDO EDO . G 3 EDO B 1 801 3 EDO EDO . H 4 HOH A 1 901 272 HOH HOH . H 4 HOH A 2 902 214 HOH HOH . H 4 HOH A 3 903 229 HOH HOH . H 4 HOH A 4 904 117 HOH HOH . H 4 HOH A 5 905 46 HOH HOH . H 4 HOH A 6 906 259 HOH HOH . H 4 HOH A 7 907 70 HOH HOH . H 4 HOH A 8 908 11 HOH HOH . H 4 HOH A 9 909 159 HOH HOH . H 4 HOH A 10 910 114 HOH HOH . H 4 HOH A 11 911 135 HOH HOH . H 4 HOH A 12 912 15 HOH HOH . H 4 HOH A 13 913 263 HOH HOH . H 4 HOH A 14 914 241 HOH HOH . H 4 HOH A 15 915 71 HOH HOH . H 4 HOH A 16 916 68 HOH HOH . H 4 HOH A 17 917 124 HOH HOH . H 4 HOH A 18 918 266 HOH HOH . H 4 HOH A 19 919 179 HOH HOH . H 4 HOH A 20 920 125 HOH HOH . H 4 HOH A 21 921 130 HOH HOH . H 4 HOH A 22 922 112 HOH HOH . H 4 HOH A 23 923 242 HOH HOH . H 4 HOH A 24 924 268 HOH HOH . H 4 HOH A 25 925 54 HOH HOH . H 4 HOH A 26 926 36 HOH HOH . H 4 HOH A 27 927 116 HOH HOH . H 4 HOH A 28 928 27 HOH HOH . H 4 HOH A 29 929 260 HOH HOH . H 4 HOH A 30 930 23 HOH HOH . H 4 HOH A 31 931 61 HOH HOH . H 4 HOH A 32 932 269 HOH HOH . H 4 HOH A 33 933 223 HOH HOH . H 4 HOH A 34 934 35 HOH HOH . H 4 HOH A 35 935 142 HOH HOH . H 4 HOH A 36 936 44 HOH HOH . H 4 HOH A 37 937 148 HOH HOH . H 4 HOH A 38 938 53 HOH HOH . H 4 HOH A 39 939 122 HOH HOH . H 4 HOH A 40 940 38 HOH HOH . H 4 HOH A 41 941 9 HOH HOH . H 4 HOH A 42 942 157 HOH HOH . H 4 HOH A 43 943 72 HOH HOH . H 4 HOH A 44 944 231 HOH HOH . H 4 HOH A 45 945 3 HOH HOH . H 4 HOH A 46 946 56 HOH HOH . H 4 HOH A 47 947 136 HOH HOH . H 4 HOH A 48 948 82 HOH HOH . H 4 HOH A 49 949 10 HOH HOH . H 4 HOH A 50 950 48 HOH HOH . H 4 HOH A 51 951 41 HOH HOH . H 4 HOH A 52 952 18 HOH HOH . H 4 HOH A 53 953 13 HOH HOH . H 4 HOH A 54 954 39 HOH HOH . H 4 HOH A 55 955 211 HOH HOH . H 4 HOH A 56 956 19 HOH HOH . H 4 HOH A 57 957 109 HOH HOH . H 4 HOH A 58 958 140 HOH HOH . H 4 HOH A 59 959 131 HOH HOH . H 4 HOH A 60 960 55 HOH HOH . H 4 HOH A 61 961 95 HOH HOH . H 4 HOH A 62 962 32 HOH HOH . H 4 HOH A 63 963 252 HOH HOH . H 4 HOH A 64 964 85 HOH HOH . H 4 HOH A 65 965 204 HOH HOH . H 4 HOH A 66 966 218 HOH HOH . H 4 HOH A 67 967 104 HOH HOH . H 4 HOH A 68 968 258 HOH HOH . H 4 HOH A 69 969 127 HOH HOH . H 4 HOH A 70 970 37 HOH HOH . H 4 HOH A 71 971 145 HOH HOH . H 4 HOH A 72 972 120 HOH HOH . H 4 HOH A 73 973 20 HOH HOH . H 4 HOH A 74 974 40 HOH HOH . H 4 HOH A 75 975 16 HOH HOH . H 4 HOH A 76 976 225 HOH HOH . H 4 HOH A 77 977 128 HOH HOH . H 4 HOH A 78 978 105 HOH HOH . H 4 HOH A 79 979 147 HOH HOH . H 4 HOH A 80 980 155 HOH HOH . H 4 HOH A 81 981 21 HOH HOH . H 4 HOH A 82 982 132 HOH HOH . H 4 HOH A 83 983 180 HOH HOH . H 4 HOH A 84 984 172 HOH HOH . H 4 HOH A 85 985 149 HOH HOH . H 4 HOH A 86 986 29 HOH HOH . H 4 HOH A 87 987 245 HOH HOH . H 4 HOH A 88 988 228 HOH HOH . H 4 HOH A 89 989 91 HOH HOH . H 4 HOH A 90 990 209 HOH HOH . H 4 HOH A 91 991 253 HOH HOH . H 4 HOH A 92 992 67 HOH HOH . H 4 HOH A 93 993 133 HOH HOH . H 4 HOH A 94 994 234 HOH HOH . H 4 HOH A 95 995 226 HOH HOH . H 4 HOH A 96 996 236 HOH HOH . H 4 HOH A 97 997 158 HOH HOH . H 4 HOH A 98 998 160 HOH HOH . H 4 HOH A 99 999 227 HOH HOH . H 4 HOH A 100 1000 100 HOH HOH . H 4 HOH A 101 1001 152 HOH HOH . H 4 HOH A 102 1002 164 HOH HOH . H 4 HOH A 103 1003 1 HOH HOH . H 4 HOH A 104 1004 243 HOH HOH . H 4 HOH A 105 1005 76 HOH HOH . H 4 HOH A 106 1006 235 HOH HOH . H 4 HOH A 107 1007 110 HOH HOH . H 4 HOH A 108 1008 161 HOH HOH . H 4 HOH A 109 1009 244 HOH HOH . H 4 HOH A 110 1010 121 HOH HOH . H 4 HOH A 111 1011 115 HOH HOH . H 4 HOH A 112 1012 203 HOH HOH . H 4 HOH A 113 1013 239 HOH HOH . H 4 HOH A 114 1014 66 HOH HOH . H 4 HOH A 115 1015 97 HOH HOH . H 4 HOH A 116 1016 163 HOH HOH . H 4 HOH A 117 1017 170 HOH HOH . H 4 HOH A 118 1018 221 HOH HOH . H 4 HOH A 119 1019 224 HOH HOH . H 4 HOH A 120 1020 169 HOH HOH . H 4 HOH A 121 1021 162 HOH HOH . H 4 HOH A 122 1022 123 HOH HOH . H 4 HOH A 123 1023 215 HOH HOH . H 4 HOH A 124 1024 84 HOH HOH . H 4 HOH A 125 1025 171 HOH HOH . H 4 HOH A 126 1026 119 HOH HOH . H 4 HOH A 127 1027 74 HOH HOH . H 4 HOH A 128 1028 198 HOH HOH . H 4 HOH A 129 1029 65 HOH HOH . H 4 HOH A 130 1030 111 HOH HOH . H 4 HOH A 131 1031 261 HOH HOH . H 4 HOH A 132 1032 101 HOH HOH . H 4 HOH A 133 1033 257 HOH HOH . H 4 HOH A 134 1034 134 HOH HOH . H 4 HOH A 135 1035 146 HOH HOH . I 4 HOH B 1 901 202 HOH HOH . I 4 HOH B 2 902 270 HOH HOH . I 4 HOH B 3 903 233 HOH HOH . I 4 HOH B 4 904 205 HOH HOH . I 4 HOH B 5 905 108 HOH HOH . I 4 HOH B 6 906 267 HOH HOH . I 4 HOH B 7 907 2 HOH HOH . I 4 HOH B 8 908 178 HOH HOH . I 4 HOH B 9 909 208 HOH HOH . I 4 HOH B 10 910 201 HOH HOH . I 4 HOH B 11 911 194 HOH HOH . I 4 HOH B 12 912 274 HOH HOH . I 4 HOH B 13 913 192 HOH HOH . I 4 HOH B 14 914 83 HOH HOH . I 4 HOH B 15 915 51 HOH HOH . I 4 HOH B 16 916 250 HOH HOH . I 4 HOH B 17 917 86 HOH HOH . I 4 HOH B 18 918 96 HOH HOH . I 4 HOH B 19 919 5 HOH HOH . I 4 HOH B 20 920 197 HOH HOH . I 4 HOH B 21 921 144 HOH HOH . I 4 HOH B 22 922 99 HOH HOH . I 4 HOH B 23 923 34 HOH HOH . I 4 HOH B 24 924 22 HOH HOH . I 4 HOH B 25 925 94 HOH HOH . I 4 HOH B 26 926 113 HOH HOH . I 4 HOH B 27 927 25 HOH HOH . I 4 HOH B 28 928 75 HOH HOH . I 4 HOH B 29 929 168 HOH HOH . I 4 HOH B 30 930 58 HOH HOH . I 4 HOH B 31 931 8 HOH HOH . I 4 HOH B 32 932 199 HOH HOH . I 4 HOH B 33 933 191 HOH HOH . I 4 HOH B 34 934 64 HOH HOH . I 4 HOH B 35 935 232 HOH HOH . I 4 HOH B 36 936 151 HOH HOH . I 4 HOH B 37 937 6 HOH HOH . I 4 HOH B 38 938 57 HOH HOH . I 4 HOH B 39 939 98 HOH HOH . I 4 HOH B 40 940 26 HOH HOH . I 4 HOH B 41 941 81 HOH HOH . I 4 HOH B 42 942 92 HOH HOH . I 4 HOH B 43 943 62 HOH HOH . I 4 HOH B 44 944 126 HOH HOH . I 4 HOH B 45 945 251 HOH HOH . I 4 HOH B 46 946 4 HOH HOH . I 4 HOH B 47 947 248 HOH HOH . I 4 HOH B 48 948 106 HOH HOH . I 4 HOH B 49 949 183 HOH HOH . I 4 HOH B 50 950 7 HOH HOH . I 4 HOH B 51 951 90 HOH HOH . I 4 HOH B 52 952 153 HOH HOH . I 4 HOH B 53 953 188 HOH HOH . I 4 HOH B 54 954 200 HOH HOH . I 4 HOH B 55 955 24 HOH HOH . I 4 HOH B 56 956 207 HOH HOH . I 4 HOH B 57 957 17 HOH HOH . I 4 HOH B 58 958 78 HOH HOH . I 4 HOH B 59 959 219 HOH HOH . I 4 HOH B 60 960 87 HOH HOH . I 4 HOH B 61 961 240 HOH HOH . I 4 HOH B 62 962 141 HOH HOH . I 4 HOH B 63 963 28 HOH HOH . I 4 HOH B 64 964 195 HOH HOH . I 4 HOH B 65 965 49 HOH HOH . I 4 HOH B 66 966 89 HOH HOH . I 4 HOH B 67 967 50 HOH HOH . I 4 HOH B 68 968 47 HOH HOH . I 4 HOH B 69 969 69 HOH HOH . I 4 HOH B 70 970 80 HOH HOH . I 4 HOH B 71 971 42 HOH HOH . I 4 HOH B 72 972 30 HOH HOH . I 4 HOH B 73 973 156 HOH HOH . I 4 HOH B 74 974 206 HOH HOH . I 4 HOH B 75 975 77 HOH HOH . I 4 HOH B 76 976 210 HOH HOH . I 4 HOH B 77 977 143 HOH HOH . I 4 HOH B 78 978 138 HOH HOH . I 4 HOH B 79 979 31 HOH HOH . I 4 HOH B 80 980 102 HOH HOH . I 4 HOH B 81 981 174 HOH HOH . I 4 HOH B 82 982 52 HOH HOH . I 4 HOH B 83 983 173 HOH HOH . I 4 HOH B 84 984 249 HOH HOH . I 4 HOH B 85 985 14 HOH HOH . I 4 HOH B 86 986 103 HOH HOH . I 4 HOH B 87 987 43 HOH HOH . I 4 HOH B 88 988 73 HOH HOH . I 4 HOH B 89 989 196 HOH HOH . I 4 HOH B 90 990 165 HOH HOH . I 4 HOH B 91 991 137 HOH HOH . I 4 HOH B 92 992 167 HOH HOH . I 4 HOH B 93 993 255 HOH HOH . I 4 HOH B 94 994 230 HOH HOH . I 4 HOH B 95 995 129 HOH HOH . I 4 HOH B 96 996 33 HOH HOH . I 4 HOH B 97 997 247 HOH HOH . I 4 HOH B 98 998 217 HOH HOH . I 4 HOH B 99 999 59 HOH HOH . I 4 HOH B 100 1000 12 HOH HOH . I 4 HOH B 101 1001 193 HOH HOH . I 4 HOH B 102 1002 154 HOH HOH . I 4 HOH B 103 1003 107 HOH HOH . I 4 HOH B 104 1004 271 HOH HOH . I 4 HOH B 105 1005 256 HOH HOH . I 4 HOH B 106 1006 60 HOH HOH . I 4 HOH B 107 1007 220 HOH HOH . I 4 HOH B 108 1008 79 HOH HOH . I 4 HOH B 109 1009 63 HOH HOH . I 4 HOH B 110 1010 254 HOH HOH . I 4 HOH B 111 1011 237 HOH HOH . I 4 HOH B 112 1012 238 HOH HOH . I 4 HOH B 113 1013 177 HOH HOH . I 4 HOH B 114 1014 185 HOH HOH . I 4 HOH B 115 1015 212 HOH HOH . I 4 HOH B 116 1016 190 HOH HOH . I 4 HOH B 117 1017 88 HOH HOH . I 4 HOH B 118 1018 118 HOH HOH . I 4 HOH B 119 1019 273 HOH HOH . I 4 HOH B 120 1020 166 HOH HOH . I 4 HOH B 121 1021 175 HOH HOH . I 4 HOH B 122 1022 176 HOH HOH . J 4 HOH C 1 101 222 HOH HOH . J 4 HOH C 2 102 213 HOH HOH . J 4 HOH C 3 103 181 HOH HOH . J 4 HOH C 4 104 246 HOH HOH . J 4 HOH C 5 105 182 HOH HOH . J 4 HOH C 6 106 262 HOH HOH . J 4 HOH C 7 107 150 HOH HOH . J 4 HOH C 8 108 93 HOH HOH . K 4 HOH D 1 101 264 HOH HOH . K 4 HOH D 2 102 216 HOH HOH . K 4 HOH D 3 103 186 HOH HOH . K 4 HOH D 4 104 189 HOH HOH . K 4 HOH D 5 105 184 HOH HOH . K 4 HOH D 6 106 265 HOH HOH . K 4 HOH D 7 107 139 HOH HOH . K 4 HOH D 8 108 45 HOH HOH . K 4 HOH D 9 109 187 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 3 61.991 28.752 31.514 1 30.85 ? C1 EDO 801 A 1 HETATM 2 O O1 EDO . . . E 3 62.087 28.203 32.827 1 29.92 ? O1 EDO 801 A 1 HETATM 3 C C2 EDO . . . E 3 61.65 27.69 30.505 1 29.98 ? C2 EDO 801 A 1 HETATM 4 O O2 EDO . . . E 3 62.809 27.417 29.707 1 32.19 ? O2 EDO 801 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #