data_5FG0 # _model_server_result.job_id 0Ownk5VbL8Iev-w2Hu43YA _model_server_result.datetime_utc '2024-12-01 23:47:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5fg0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":502}' # _entry.id 5FG0 # _exptl.entry_id 5FG0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 116.58 _cell.angle_gamma 90 _cell.entry_id 5FG0 _cell.length_a 88.514 _cell.length_b 80.352 _cell.length_c 97.325 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5FG0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,H 1 1 B,E,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O VAL 175 A VAL 185 1_555 C K K . A K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.741 ? metalc ? metalc2 A O GLU 178 A GLU 188 1_555 C K K . A K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.771 ? metalc ? metalc3 A OH TYR 198 A TYR 208 1_555 C K K . A K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.756 ? metalc ? metalc4 A OG SER 235 A SER 245 1_555 C K K . A K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.764 ? metalc ? metalc5 C K K . A K 501 1_555 H O HOH . A HOH 648 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.762 ? metalc ? metalc6 C K K . A K 501 1_555 H O HOH . A HOH 675 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.824 ? metalc ? metalc7 B O VAL 175 B VAL 185 1_555 E K K . B K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.734 ? metalc ? metalc8 B O GLU 178 B GLU 188 1_555 E K K . B K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.787 ? metalc ? metalc9 B OH TYR 198 B TYR 208 1_555 E K K . B K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.807 ? metalc ? metalc10 B OG SER 235 B SER 245 1_555 E K K . B K 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.742 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 5FG0 _atom_sites.fract_transf_matrix[1][1] 0.011298 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005653 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012445 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011489 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 K A 1 501 2 K K . D 3 EDO A 1 502 2 EDO EDO . E 2 K B 1 501 1 K K . F 3 EDO B 1 502 1 EDO EDO . G 3 EDO B 1 503 3 EDO EDO . H 4 HOH A 1 601 16 HOH HOH . H 4 HOH A 2 602 107 HOH HOH . H 4 HOH A 3 603 8 HOH HOH . H 4 HOH A 4 604 50 HOH HOH . H 4 HOH A 5 605 15 HOH HOH . H 4 HOH A 6 606 166 HOH HOH . H 4 HOH A 7 607 120 HOH HOH . H 4 HOH A 8 608 20 HOH HOH . H 4 HOH A 9 609 96 HOH HOH . H 4 HOH A 10 610 55 HOH HOH . H 4 HOH A 11 611 73 HOH HOH . H 4 HOH A 12 612 126 HOH HOH . H 4 HOH A 13 613 77 HOH HOH . H 4 HOH A 14 614 3 HOH HOH . H 4 HOH A 15 615 6 HOH HOH . H 4 HOH A 16 616 139 HOH HOH . H 4 HOH A 17 617 110 HOH HOH . H 4 HOH A 18 618 71 HOH HOH . H 4 HOH A 19 619 99 HOH HOH . H 4 HOH A 20 620 13 HOH HOH . H 4 HOH A 21 621 88 HOH HOH . H 4 HOH A 22 622 49 HOH HOH . H 4 HOH A 23 623 53 HOH HOH . H 4 HOH A 24 624 68 HOH HOH . H 4 HOH A 25 625 105 HOH HOH . H 4 HOH A 26 626 137 HOH HOH . H 4 HOH A 27 627 11 HOH HOH . H 4 HOH A 28 628 83 HOH HOH . H 4 HOH A 29 629 160 HOH HOH . H 4 HOH A 30 630 10 HOH HOH . H 4 HOH A 31 631 28 HOH HOH . H 4 HOH A 32 632 7 HOH HOH . H 4 HOH A 33 633 43 HOH HOH . H 4 HOH A 34 634 56 HOH HOH . H 4 HOH A 35 635 17 HOH HOH . H 4 HOH A 36 636 138 HOH HOH . H 4 HOH A 37 637 52 HOH HOH . H 4 HOH A 38 638 154 HOH HOH . H 4 HOH A 39 639 165 HOH HOH . H 4 HOH A 40 640 149 HOH HOH . H 4 HOH A 41 641 82 HOH HOH . H 4 HOH A 42 642 163 HOH HOH . H 4 HOH A 43 643 47 HOH HOH . H 4 HOH A 44 644 100 HOH HOH . H 4 HOH A 45 645 62 HOH HOH . H 4 HOH A 46 646 24 HOH HOH . H 4 HOH A 47 647 63 HOH HOH . H 4 HOH A 48 648 2 HOH HOH . H 4 HOH A 49 649 38 HOH HOH . H 4 HOH A 50 650 134 HOH HOH . H 4 HOH A 51 651 51 HOH HOH . H 4 HOH A 52 652 26 HOH HOH . H 4 HOH A 53 653 121 HOH HOH . H 4 HOH A 54 654 34 HOH HOH . H 4 HOH A 55 655 40 HOH HOH . H 4 HOH A 56 656 108 HOH HOH . H 4 HOH A 57 657 133 HOH HOH . H 4 HOH A 58 658 164 HOH HOH . H 4 HOH A 59 659 80 HOH HOH . H 4 HOH A 60 660 168 HOH HOH . H 4 HOH A 61 661 161 HOH HOH . H 4 HOH A 62 662 170 HOH HOH . H 4 HOH A 63 663 124 HOH HOH . H 4 HOH A 64 664 122 HOH HOH . H 4 HOH A 65 665 150 HOH HOH . H 4 HOH A 66 666 162 HOH HOH . H 4 HOH A 67 667 135 HOH HOH . H 4 HOH A 68 668 78 HOH HOH . H 4 HOH A 69 669 147 HOH HOH . H 4 HOH A 70 670 169 HOH HOH . H 4 HOH A 71 671 123 HOH HOH . H 4 HOH A 72 672 64 HOH HOH . H 4 HOH A 73 673 1 HOH HOH . H 4 HOH A 74 674 127 HOH HOH . H 4 HOH A 75 675 172 HOH HOH . H 4 HOH A 76 676 155 HOH HOH . H 4 HOH A 77 677 42 HOH HOH . H 4 HOH A 78 678 145 HOH HOH . H 4 HOH A 79 679 125 HOH HOH . H 4 HOH A 80 680 101 HOH HOH . H 4 HOH A 81 681 39 HOH HOH . H 4 HOH A 82 682 131 HOH HOH . H 4 HOH A 83 683 167 HOH HOH . H 4 HOH A 84 684 104 HOH HOH . H 4 HOH A 85 685 153 HOH HOH . H 4 HOH A 86 686 128 HOH HOH . I 4 HOH B 1 601 130 HOH HOH . I 4 HOH B 2 602 116 HOH HOH . I 4 HOH B 3 603 140 HOH HOH . I 4 HOH B 4 604 25 HOH HOH . I 4 HOH B 5 605 146 HOH HOH . I 4 HOH B 6 606 141 HOH HOH . I 4 HOH B 7 607 30 HOH HOH . I 4 HOH B 8 608 106 HOH HOH . I 4 HOH B 9 609 90 HOH HOH . I 4 HOH B 10 610 12 HOH HOH . I 4 HOH B 11 611 92 HOH HOH . I 4 HOH B 12 612 9 HOH HOH . I 4 HOH B 13 613 44 HOH HOH . I 4 HOH B 14 614 37 HOH HOH . I 4 HOH B 15 615 4 HOH HOH . I 4 HOH B 16 616 72 HOH HOH . I 4 HOH B 17 617 5 HOH HOH . I 4 HOH B 18 618 111 HOH HOH . I 4 HOH B 19 619 22 HOH HOH . I 4 HOH B 20 620 86 HOH HOH . I 4 HOH B 21 621 21 HOH HOH . I 4 HOH B 22 622 70 HOH HOH . I 4 HOH B 23 623 75 HOH HOH . I 4 HOH B 24 624 144 HOH HOH . I 4 HOH B 25 625 27 HOH HOH . I 4 HOH B 26 626 66 HOH HOH . I 4 HOH B 27 627 33 HOH HOH . I 4 HOH B 28 628 115 HOH HOH . I 4 HOH B 29 629 18 HOH HOH . I 4 HOH B 30 630 48 HOH HOH . I 4 HOH B 31 631 32 HOH HOH . I 4 HOH B 32 632 57 HOH HOH . I 4 HOH B 33 633 23 HOH HOH . I 4 HOH B 34 634 31 HOH HOH . I 4 HOH B 35 635 58 HOH HOH . I 4 HOH B 36 636 156 HOH HOH . I 4 HOH B 37 637 54 HOH HOH . I 4 HOH B 38 638 112 HOH HOH . I 4 HOH B 39 639 45 HOH HOH . I 4 HOH B 40 640 61 HOH HOH . I 4 HOH B 41 641 19 HOH HOH . I 4 HOH B 42 642 171 HOH HOH . I 4 HOH B 43 643 46 HOH HOH . I 4 HOH B 44 644 148 HOH HOH . I 4 HOH B 45 645 35 HOH HOH . I 4 HOH B 46 646 59 HOH HOH . I 4 HOH B 47 647 91 HOH HOH . I 4 HOH B 48 648 93 HOH HOH . I 4 HOH B 49 649 41 HOH HOH . I 4 HOH B 50 650 85 HOH HOH . I 4 HOH B 51 651 67 HOH HOH . I 4 HOH B 52 652 84 HOH HOH . I 4 HOH B 53 653 14 HOH HOH . I 4 HOH B 54 654 113 HOH HOH . I 4 HOH B 55 655 151 HOH HOH . I 4 HOH B 56 656 103 HOH HOH . I 4 HOH B 57 657 143 HOH HOH . I 4 HOH B 58 658 132 HOH HOH . I 4 HOH B 59 659 74 HOH HOH . I 4 HOH B 60 660 109 HOH HOH . I 4 HOH B 61 661 76 HOH HOH . I 4 HOH B 62 662 97 HOH HOH . I 4 HOH B 63 663 65 HOH HOH . I 4 HOH B 64 664 157 HOH HOH . I 4 HOH B 65 665 79 HOH HOH . I 4 HOH B 66 666 29 HOH HOH . I 4 HOH B 67 667 81 HOH HOH . I 4 HOH B 68 668 95 HOH HOH . I 4 HOH B 69 669 98 HOH HOH . I 4 HOH B 70 670 152 HOH HOH . I 4 HOH B 71 671 129 HOH HOH . I 4 HOH B 72 672 102 HOH HOH . I 4 HOH B 73 673 87 HOH HOH . I 4 HOH B 74 674 69 HOH HOH . I 4 HOH B 75 675 117 HOH HOH . I 4 HOH B 76 676 114 HOH HOH . I 4 HOH B 77 677 142 HOH HOH . I 4 HOH B 78 678 118 HOH HOH . I 4 HOH B 79 679 36 HOH HOH . I 4 HOH B 80 680 119 HOH HOH . I 4 HOH B 81 681 60 HOH HOH . I 4 HOH B 82 682 158 HOH HOH . I 4 HOH B 83 683 94 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 3 198.153 7.098 19.813 1 63.29 ? C1 EDO 502 B 1 HETATM 2 O O1 EDO . . . F 3 199.147 8.032 20.253 1 65.93 ? O1 EDO 502 B 1 HETATM 3 C C2 EDO . . . F 3 198.595 6.426 18.515 1 52.73 ? C2 EDO 502 B 1 HETATM 4 O O2 EDO . . . F 3 198.684 7.385 17.452 1 45.63 ? O2 EDO 502 B 1 # _model_server_stats.io_time_ms 40 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #