data_5FGN # _model_server_result.job_id PGOcoYgJKwNxwBNaOR2N-w _model_server_result.datetime_utc '2024-11-17 09:50:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5fgn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 5FGN # _exptl.entry_id 5FGN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 510.615 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECYL-BETA-D-MALTOSIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5FGN _cell.length_a 187.285 _cell.length_b 187.285 _cell.length_c 205.125 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5FGN _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 276 A CYS 276 1_555 A SG CYS 286 A CYS 286 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf2 A SG CYS 327 A CYS 327 1_555 A SG CYS 331 A CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf3 A SG CYS 348 A CYS 348 1_555 A SG CYS 353 A CYS 353 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf4 A SG CYS 402 A CYS 402 1_555 A SG CYS 410 A CYS 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 A SG CYS 499 A CYS 499 1_555 A SG CYS 540 A CYS 540 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc1 A OE1 GLU 240 A GLU 240 1_555 D ZN ZN . A ZN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? metalc ? metalc2 A OG1 THR 280 A THR 280 1_555 D ZN ZN . A ZN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.822 ? metalc ? metalc3 A OD2 ASP 452 A ASP 452 1_555 D ZN ZN . A ZN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.776 ? metalc ? metalc4 A NE2 HIS 453 A HIS 453 1_555 D ZN ZN . A ZN 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.902 ? # _chem_comp.formula 'C24 H46 O11' _chem_comp.formula_weight 510.615 _chem_comp.id LMT _chem_comp.mon_nstd_flag . _chem_comp.name DODECYL-BETA-D-MALTOSIDE _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1B C2B LMT sing 242 n n C1B O1B LMT sing 243 n n C1B O5B LMT sing 244 n n C1B H1B LMT sing 245 n n C2B C3B LMT sing 246 n n C2B O2B LMT sing 247 n n C2B H2B LMT sing 248 n n C3B C4B LMT sing 249 n n C3B O3B LMT sing 250 n n C3B H3B LMT sing 251 n n C4B C5B LMT sing 252 n n C4B O4' LMT sing 253 n n C4B H4B LMT sing 254 n n C5B C6B LMT sing 255 n n C5B O5B LMT sing 256 n n C5B H5B LMT sing 257 n n C6B O6B LMT sing 258 n n C6B "H6'2" LMT sing 259 n n C6B "H6'1" LMT sing 260 n n O1B C4' LMT sing 261 n n O2B H2O1 LMT sing 262 n n O3B H3O1 LMT sing 263 n n O4' H4O1 LMT sing 264 n n O6B H6B LMT sing 265 n n C1' C2' LMT sing 266 n n C1' O1' LMT sing 267 n n C1' O5' LMT sing 268 n n C1' H1' LMT sing 269 n n C2' C3' LMT sing 270 n n C2' O2' LMT sing 271 n n C2' H2' LMT sing 272 n n C3' C4' LMT sing 273 n n C3' O3' LMT sing 274 n n C3' H3' LMT sing 275 n n C4' C5' LMT sing 276 n n C4' H4' LMT sing 277 n n C5' C6' LMT sing 278 n n C5' O5' LMT sing 279 n n C5' H5' LMT sing 280 n n C6' O6' LMT sing 281 n n C6' H6D LMT sing 282 n n C6' H6E LMT sing 283 n n O1' C1 LMT sing 284 n n O2' H2O2 LMT sing 285 n n O3' H3O2 LMT sing 286 n n O6' H6' LMT sing 287 n n C1 C2 LMT sing 288 n n C1 H12 LMT sing 289 n n C1 H11 LMT sing 290 n n C2 C3 LMT sing 291 n n C2 H22 LMT sing 292 n n C2 H21 LMT sing 293 n n C3 C4 LMT sing 294 n n C3 H32 LMT sing 295 n n C3 H31 LMT sing 296 n n C4 C5 LMT sing 297 n n C4 H42 LMT sing 298 n n C4 H41 LMT sing 299 n n C5 C6 LMT sing 300 n n C5 H52 LMT sing 301 n n C5 H51 LMT sing 302 n n C6 C7 LMT sing 303 n n C6 H62 LMT sing 304 n n C6 H61 LMT sing 305 n n C7 C8 LMT sing 306 n n C7 H72 LMT sing 307 n n C7 H71 LMT sing 308 n n C8 C9 LMT sing 309 n n C8 H82 LMT sing 310 n n C8 H81 LMT sing 311 n n C9 C10 LMT sing 312 n n C9 H92 LMT sing 313 n n C9 H91 LMT sing 314 n n C10 C11 LMT sing 315 n n C10 H102 LMT sing 316 n n C10 H101 LMT sing 317 n n C11 C12 LMT sing 318 n n C11 H112 LMT sing 319 n n C11 H111 LMT sing 320 n n C12 H123 LMT sing 321 n n C12 H122 LMT sing 322 n n C12 H121 LMT sing 323 n n # _atom_sites.entry_id 5FGN _atom_sites.fract_transf_matrix[1][1] 0.005339 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005339 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004875 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BGL A 1 601 1 BGL BGL . C 3 LMT A 1 602 4912 LMT LMT . D 4 ZN A 1 603 1 ZN ZN . E 5 HOH A 1 701 137 HOH HOH . E 5 HOH A 2 702 98 HOH HOH . E 5 HOH A 3 703 43 HOH HOH . E 5 HOH A 4 704 33 HOH HOH . E 5 HOH A 5 705 61 HOH HOH . E 5 HOH A 6 706 49 HOH HOH . E 5 HOH A 7 707 108 HOH HOH . E 5 HOH A 8 708 45 HOH HOH . E 5 HOH A 9 709 89 HOH HOH . E 5 HOH A 10 710 88 HOH HOH . E 5 HOH A 11 711 126 HOH HOH . E 5 HOH A 12 712 63 HOH HOH . E 5 HOH A 13 713 35 HOH HOH . E 5 HOH A 14 714 40 HOH HOH . E 5 HOH A 15 715 39 HOH HOH . E 5 HOH A 16 716 77 HOH HOH . E 5 HOH A 17 717 133 HOH HOH . E 5 HOH A 18 718 106 HOH HOH . E 5 HOH A 19 719 55 HOH HOH . E 5 HOH A 20 720 107 HOH HOH . E 5 HOH A 21 721 93 HOH HOH . E 5 HOH A 22 722 82 HOH HOH . E 5 HOH A 23 723 90 HOH HOH . E 5 HOH A 24 724 54 HOH HOH . E 5 HOH A 25 725 118 HOH HOH . E 5 HOH A 26 726 92 HOH HOH . E 5 HOH A 27 727 51 HOH HOH . E 5 HOH A 28 728 42 HOH HOH . E 5 HOH A 29 729 48 HOH HOH . E 5 HOH A 30 730 60 HOH HOH . E 5 HOH A 31 731 46 HOH HOH . E 5 HOH A 32 732 62 HOH HOH . E 5 HOH A 33 733 7 HOH HOH . E 5 HOH A 34 734 78 HOH HOH . E 5 HOH A 35 735 56 HOH HOH . E 5 HOH A 36 736 57 HOH HOH . E 5 HOH A 37 737 53 HOH HOH . E 5 HOH A 38 738 100 HOH HOH . E 5 HOH A 39 739 41 HOH HOH . E 5 HOH A 40 740 97 HOH HOH . E 5 HOH A 41 741 81 HOH HOH . E 5 HOH A 42 742 120 HOH HOH . E 5 HOH A 43 743 58 HOH HOH . E 5 HOH A 44 744 66 HOH HOH . E 5 HOH A 45 745 74 HOH HOH . E 5 HOH A 46 746 34 HOH HOH . E 5 HOH A 47 747 38 HOH HOH . E 5 HOH A 48 748 50 HOH HOH . E 5 HOH A 49 749 68 HOH HOH . E 5 HOH A 50 750 132 HOH HOH . E 5 HOH A 51 751 37 HOH HOH . E 5 HOH A 52 752 67 HOH HOH . E 5 HOH A 53 753 129 HOH HOH . E 5 HOH A 54 754 101 HOH HOH . E 5 HOH A 55 755 128 HOH HOH . E 5 HOH A 56 756 47 HOH HOH . E 5 HOH A 57 757 131 HOH HOH . E 5 HOH A 58 758 99 HOH HOH . E 5 HOH A 59 759 110 HOH HOH . E 5 HOH A 60 760 138 HOH HOH . E 5 HOH A 61 761 114 HOH HOH . E 5 HOH A 62 762 9 HOH HOH . E 5 HOH A 63 763 2 HOH HOH . E 5 HOH A 64 764 52 HOH HOH . E 5 HOH A 65 765 76 HOH HOH . E 5 HOH A 66 766 121 HOH HOH . E 5 HOH A 67 767 105 HOH HOH . E 5 HOH A 68 768 69 HOH HOH . E 5 HOH A 69 769 127 HOH HOH . E 5 HOH A 70 770 119 HOH HOH . E 5 HOH A 71 771 130 HOH HOH . E 5 HOH A 72 772 1 HOH HOH . E 5 HOH A 73 773 91 HOH HOH . E 5 HOH A 74 774 3 HOH HOH . E 5 HOH A 75 775 72 HOH HOH . E 5 HOH A 76 776 134 HOH HOH . E 5 HOH A 77 777 111 HOH HOH . E 5 HOH A 78 778 71 HOH HOH . E 5 HOH A 79 779 103 HOH HOH . E 5 HOH A 80 780 113 HOH HOH . E 5 HOH A 81 781 4 HOH HOH . E 5 HOH A 82 782 86 HOH HOH . E 5 HOH A 83 783 5 HOH HOH . E 5 HOH A 84 784 75 HOH HOH . E 5 HOH A 85 785 116 HOH HOH . E 5 HOH A 86 786 84 HOH HOH . E 5 HOH A 87 787 122 HOH HOH . E 5 HOH A 88 788 124 HOH HOH . E 5 HOH A 89 789 13 HOH HOH . E 5 HOH A 90 790 18 HOH HOH . E 5 HOH A 91 791 109 HOH HOH . E 5 HOH A 92 792 102 HOH HOH . E 5 HOH A 93 793 16 HOH HOH . E 5 HOH A 94 794 94 HOH HOH . E 5 HOH A 95 795 6 HOH HOH . E 5 HOH A 96 796 15 HOH HOH . E 5 HOH A 97 797 85 HOH HOH . E 5 HOH A 98 798 79 HOH HOH . E 5 HOH A 99 799 96 HOH HOH . E 5 HOH A 100 800 17 HOH HOH . E 5 HOH A 101 801 104 HOH HOH . E 5 HOH A 102 802 95 HOH HOH . E 5 HOH A 103 803 26 HOH HOH . E 5 HOH A 104 804 123 HOH HOH . E 5 HOH A 105 805 25 HOH HOH . E 5 HOH A 106 806 20 HOH HOH . E 5 HOH A 107 807 27 HOH HOH . E 5 HOH A 108 808 30 HOH HOH . E 5 HOH A 109 809 10 HOH HOH . E 5 HOH A 110 810 19 HOH HOH . E 5 HOH A 111 811 28 HOH HOH . E 5 HOH A 112 812 14 HOH HOH . E 5 HOH A 113 813 32 HOH HOH . E 5 HOH A 114 814 21 HOH HOH . E 5 HOH A 115 815 23 HOH HOH . E 5 HOH A 116 816 12 HOH HOH . E 5 HOH A 117 817 11 HOH HOH . E 5 HOH A 118 818 83 HOH HOH . E 5 HOH A 119 819 87 HOH HOH . E 5 HOH A 120 820 22 HOH HOH . E 5 HOH A 121 821 70 HOH HOH . E 5 HOH A 122 822 29 HOH HOH . E 5 HOH A 123 823 135 HOH HOH . E 5 HOH A 124 824 24 HOH HOH . E 5 HOH A 125 825 117 HOH HOH . E 5 HOH A 126 826 31 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1B LMT . . . C 3 40.927 -18.473 -21.308 1 43.6 ? C1B LMT 602 A 1 HETATM 2 C C2B LMT . . . C 3 39.576 -17.869 -21.18 1 44.38 ? C2B LMT 602 A 1 HETATM 3 C C3B LMT . . . C 3 39.069 -17.384 -22.464 1 44.35 ? C3B LMT 602 A 1 HETATM 4 C C4B LMT . . . C 3 40.057 -16.517 -23.189 1 48.99 ? C4B LMT 602 A 1 HETATM 5 C C5B LMT . . . C 3 41.442 -17.125 -23.256 1 46.47 ? C5B LMT 602 A 1 HETATM 6 C C6B LMT . . . C 3 42.42 -16.12 -23.773 1 44.33 ? C6B LMT 602 A 1 HETATM 7 O O1B LMT . . . C 3 40.7 -19.542 -22.14 1 43.85 ? O1B LMT 602 A 1 HETATM 8 O O2B LMT . . . C 3 38.745 -18.978 -20.78 1 48.29 ? O2B LMT 602 A 1 HETATM 9 O O3B LMT . . . C 3 37.834 -16.628 -22.244 1 42.37 ? O3B LMT 602 A 1 HETATM 10 O O4' LMT . . . C 3 39.573 -16.35 -24.526 1 52.84 ? O4' LMT 602 A 1 HETATM 11 O O5B LMT . . . C 3 41.913 -17.566 -21.958 1 43.96 ? O5B LMT 602 A 1 HETATM 12 O O6B LMT . . . C 3 42.754 -15.213 -22.74 1 44.16 ? O6B LMT 602 A 1 HETATM 13 C C1' LMT . . . C 3 41.851 -23.487 -22.253 1 49.46 ? C1' LMT 602 A 1 HETATM 14 C C2' LMT . . . C 3 40.652 -23.143 -21.42 1 45.34 ? C2' LMT 602 A 1 HETATM 15 C C3' LMT . . . C 3 40.18 -21.814 -21.851 1 44.75 ? C3' LMT 602 A 1 HETATM 16 C C4' LMT . . . C 3 41.2 -20.778 -21.578 1 44.19 ? C4' LMT 602 A 1 HETATM 17 C C5' LMT . . . C 3 42.492 -21.116 -22.276 1 45.89 ? C5' LMT 602 A 1 HETATM 18 C C6' LMT . . . C 3 43.571 -20.197 -21.821 1 46.66 ? C6' LMT 602 A 1 HETATM 19 O O1' LMT . . . C 3 42.342 -24.769 -21.918 1 57.95 ? O1' LMT 602 A 1 HETATM 20 O O2' LMT . . . C 3 39.611 -24.113 -21.615 1 44.43 ? O2' LMT 602 A 1 HETATM 21 O O3' LMT . . . C 3 38.945 -21.461 -21.177 1 43.56 ? O3' LMT 602 A 1 HETATM 22 O O5' LMT . . . C 3 42.921 -22.487 -22.003 1 48.83 ? O5' LMT 602 A 1 HETATM 23 O O6' LMT . . . C 3 44.291 -20.86 -20.792 1 51.1 ? O6' LMT 602 A 1 HETATM 24 C C1 LMT . . . C 3 41.675 -25.871 -22.529 1 56.5 ? C1 LMT 602 A 1 HETATM 25 C C2 LMT . . . C 3 42.485 -26.308 -23.787 1 60.52 ? C2 LMT 602 A 1 HETATM 26 C C3 LMT . . . C 3 43.931 -26.54 -23.382 1 60.73 ? C3 LMT 602 A 1 HETATM 27 C C4 LMT . . . C 3 44.245 -28.017 -23.676 1 61.61 ? C4 LMT 602 A 1 HETATM 28 C C5 LMT . . . C 3 45.767 -28.158 -24.069 1 57.71 ? C5 LMT 602 A 1 HETATM 29 C C6 LMT . . . C 3 46.074 -27.132 -25.152 1 58.67 ? C6 LMT 602 A 1 HETATM 30 C C7 LMT . . . C 3 47.589 -27.195 -25.502 1 53 ? C7 LMT 602 A 1 HETATM 31 C C8 LMT . . . C 3 47.777 -26.603 -26.942 1 75.22 ? C8 LMT 602 A 1 HETATM 32 C C9 LMT . . . C 3 47.605 -27.716 -27.972 1 75.35 ? C9 LMT 602 A 1 HETATM 33 C C10 LMT . . . C 3 47.184 -27.141 -29.34 1 76.17 ? C10 LMT 602 A 1 HETATM 34 C C11 LMT . . . C 3 48.426 -26.894 -30.214 1 76.49 ? C11 LMT 602 A 1 HETATM 35 C C12 LMT . . . C 3 49.23 -25.73 -29.612 1 77.24 ? C12 LMT 602 A 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 35 #