data_5FGZ # _model_server_result.job_id knBvMOb2xGn1wI4rvsFxew _model_server_result.datetime_utc '2024-11-23 22:52:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5fgz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":902}' # _entry.id 5FGZ # _exptl.entry_id 5FGZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 352.364 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[[(3~{R},6~{S})-1-methanoyl-6-[[(3~{S})-pyrrolidin-3-yl]oxycarbamoyl]piperidin-3-yl]amino] hydrogen sulfate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5FGZ _cell.length_a 62.48 _cell.length_b 63.22 _cell.length_c 293.91 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5FGZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OG _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 453 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 510 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id CAP _struct_conn.ptnr2_label_comp_id 5VW _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id 5VW _struct_conn.ptnr2_auth_seq_id 902 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.415 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C11 H20 N4 O7 S' _chem_comp.formula_weight 352.364 _chem_comp.id 5VW _chem_comp.mon_nstd_flag . _chem_comp.name '[[(3~{R},6~{S})-1-methanoyl-6-[[(3~{S})-pyrrolidin-3-yl]oxycarbamoyl]piperidin-3-yl]amino] hydrogen sulfate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'FPI-1465, bound form' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAK SAI 5VW doub 1 n n CAD CAE 5VW sing 2 n n CAD N 5VW sing 3 n n CAE NAG 5VW sing 4 n n CAE CAF 5VW sing 5 n n NAG OAH 5VW sing 6 n n SAI OAH 5VW sing 7 n n SAI OAL 5VW doub 8 n n SAI OAJ 5VW sing 9 n n N CAP 5VW sing 10 n n N CA 5VW sing 11 n n CAF CB 5VW sing 12 n n CAP OAQ 5VW doub 13 n n O C 5VW doub 14 n n CB CA 5VW sing 15 n n CA C 5VW sing 16 n n C NAN 5VW sing 17 n n NAN OAR 5VW sing 18 n n OAR CAS 5VW sing 19 n n CAT CAS 5VW sing 20 n n CAT NAU 5VW sing 21 n n CAS CAW 5VW sing 22 n n NAU CAV 5VW sing 23 n n CAW CAV 5VW sing 24 n n NAG H23 5VW sing 25 n n CAE H4 5VW sing 26 n n CAF H5 5VW sing 27 n n CAF H6 5VW sing 28 n n CB H7 5VW sing 29 n n CB H8 5VW sing 30 n n CAD H9 5VW sing 31 n n CAD H10 5VW sing 32 n n CAP H2 5VW sing 33 n n CA H12 5VW sing 34 n n NAN H13 5VW sing 35 n n CAS H14 5VW sing 36 n n CAW H16 5VW sing 37 n n CAW H15 5VW sing 38 n n CAV H17 5VW sing 39 n n CAV H18 5VW sing 40 n n NAU HB6 5VW sing 41 n n CAT H22 5VW sing 42 n n CAT H21 5VW sing 43 n n OAJ H20 5VW sing 44 n n # _atom_sites.entry_id 5FGZ _atom_sites.fract_transf_matrix[1][1] 0.016005 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015818 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003402 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 M0E A 1 901 901 M0E M0E . C 3 5VW A 1 902 1 5VW DRG . D 4 HOH A 1 1001 29 HOH HOH . D 4 HOH A 2 1002 50 HOH HOH . D 4 HOH A 3 1003 16 HOH HOH . D 4 HOH A 4 1004 30 HOH HOH . D 4 HOH A 5 1005 14 HOH HOH . D 4 HOH A 6 1006 67 HOH HOH . D 4 HOH A 7 1007 1 HOH HOH . D 4 HOH A 8 1008 48 HOH HOH . D 4 HOH A 9 1009 28 HOH HOH . D 4 HOH A 10 1010 55 HOH HOH . D 4 HOH A 11 1011 22 HOH HOH . D 4 HOH A 12 1012 26 HOH HOH . D 4 HOH A 13 1013 32 HOH HOH . D 4 HOH A 14 1014 47 HOH HOH . D 4 HOH A 15 1015 9 HOH HOH . D 4 HOH A 16 1016 31 HOH HOH . D 4 HOH A 17 1017 49 HOH HOH . D 4 HOH A 18 1018 57 HOH HOH . D 4 HOH A 19 1019 24 HOH HOH . D 4 HOH A 20 1020 54 HOH HOH . D 4 HOH A 21 1021 62 HOH HOH . D 4 HOH A 22 1022 11 HOH HOH . D 4 HOH A 23 1023 59 HOH HOH . D 4 HOH A 24 1024 18 HOH HOH . D 4 HOH A 25 1025 10 HOH HOH . D 4 HOH A 26 1026 23 HOH HOH . D 4 HOH A 27 1027 39 HOH HOH . D 4 HOH A 28 1028 5 HOH HOH . D 4 HOH A 29 1029 12 HOH HOH . D 4 HOH A 30 1030 21 HOH HOH . D 4 HOH A 31 1031 43 HOH HOH . D 4 HOH A 32 1032 15 HOH HOH . D 4 HOH A 33 1033 58 HOH HOH . D 4 HOH A 34 1034 6 HOH HOH . D 4 HOH A 35 1035 34 HOH HOH . D 4 HOH A 36 1036 4 HOH HOH . D 4 HOH A 37 1037 35 HOH HOH . D 4 HOH A 38 1038 25 HOH HOH . D 4 HOH A 39 1039 3 HOH HOH . D 4 HOH A 40 1040 2 HOH HOH . D 4 HOH A 41 1041 38 HOH HOH . D 4 HOH A 42 1042 40 HOH HOH . D 4 HOH A 43 1043 65 HOH HOH . D 4 HOH A 44 1044 20 HOH HOH . D 4 HOH A 45 1045 53 HOH HOH . D 4 HOH A 46 1046 7 HOH HOH . D 4 HOH A 47 1047 66 HOH HOH . D 4 HOH A 48 1048 13 HOH HOH . D 4 HOH A 49 1049 44 HOH HOH . D 4 HOH A 50 1050 33 HOH HOH . D 4 HOH A 51 1051 64 HOH HOH . D 4 HOH A 52 1052 36 HOH HOH . D 4 HOH A 53 1053 27 HOH HOH . D 4 HOH A 54 1054 63 HOH HOH . D 4 HOH A 55 1055 51 HOH HOH . D 4 HOH A 56 1056 46 HOH HOH . D 4 HOH A 57 1057 41 HOH HOH . D 4 HOH A 58 1058 42 HOH HOH . D 4 HOH A 59 1059 52 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAL 5VW . . . C 3 -34.789 17.777 -61.133 1 20 ? OAL 5VW 902 A 1 HETATM 2 S SAI 5VW . . . C 3 -35.027 16.385 -61.648 1 20 ? SAI 5VW 902 A 1 HETATM 3 O OAJ 5VW . . . C 3 -33.954 15.593 -61.073 1 20 ? OAJ 5VW 902 A 1 HETATM 4 O OAK 5VW . . . C 3 -35.021 16.317 -63.124 1 20 ? OAK 5VW 902 A 1 HETATM 5 O OAH 5VW . . . C 3 -36.351 15.773 -61.256 1 20 ? OAH 5VW 902 A 1 HETATM 6 N NAG 5VW . . . C 3 -37.525 15.585 -62.163 1 20 ? NAG 5VW 902 A 1 HETATM 7 C CAE 5VW . . . C 3 -38.222 14.299 -62.211 1 20 ? CAE 5VW 902 A 1 HETATM 8 C CAF 5VW . . . C 3 -39.17 14.083 -61.009 1 20 ? CAF 5VW 902 A 1 HETATM 9 C CB 5VW . . . C 3 -39.133 12.781 -60.263 1 20 ? CB 5VW 902 A 1 HETATM 10 C CAD 5VW . . . C 3 -37.295 13.262 -62.378 1 20 ? CAD 5VW 902 A 1 HETATM 11 N N 5VW . . . C 3 -36.736 12.884 -61.106 1 20 ? N 5VW 902 A 1 HETATM 12 C CAP 5VW . . . C 3 -35.458 13.251 -60.88 1 20 ? CAP 5VW 902 A 1 HETATM 13 O OAQ 5VW . . . C 3 -35.175 12.946 -59.722 1 20 ? OAQ 5VW 902 A 1 HETATM 14 C CA 5VW . . . C 3 -37.753 12.24 -60.075 1 20 ? CA 5VW 902 A 1 HETATM 15 C C 5VW . . . C 3 -37.939 10.801 -59.763 1 20 ? C 5VW 902 A 1 HETATM 16 O O 5VW . . . C 3 -37.678 9.856 -60.482 1 20 ? O 5VW 902 A 1 HETATM 17 N NAN 5VW . . . C 3 -38.425 10.612 -58.519 1 20 ? NAN 5VW 902 A 1 HETATM 18 O OAR 5VW . . . C 3 -38.93 9.107 -57.817 1 20 ? OAR 5VW 902 A 1 HETATM 19 C CAS 5VW . . . C 3 -38.077 8.534 -56.897 1 20 ? CAS 5VW 902 A 1 HETATM 20 C CAW 5VW . . . C 3 -38.636 8.668 -55.605 1 20 ? CAW 5VW 902 A 1 HETATM 21 C CAV 5VW . . . C 3 -38.305 7.482 -54.836 1 20 ? CAV 5VW 902 A 1 HETATM 22 N NAU 5VW . . . C 3 -38.311 6.395 -55.793 1 20 ? NAU 5VW 902 A 1 HETATM 23 C CAT 5VW . . . C 3 -37.997 7.019 -57.04 1 20 ? CAT 5VW 902 A 1 HETATM 24 H H23 5VW . . . C 3 -38.203 16.265 -61.908 1 20 ? H23 5VW 902 A 1 HETATM 25 H H4 5VW . . . C 3 -38.789 14.34 -63.123 1 20 ? H4 5VW 902 A 1 HETATM 26 H H5 5VW . . . C 3 -40.185 14.216 -61.349 1 20 ? H5 5VW 902 A 1 HETATM 27 H H6 5VW . . . C 3 -38.937 14.852 -60.287 1 20 ? H6 5VW 902 A 1 HETATM 28 H H7 5VW . . . C 3 -39.756 12.072 -60.768 1 20 ? H7 5VW 902 A 1 HETATM 29 H H8 5VW . . . C 3 -39.532 12.963 -59.283 1 20 ? H8 5VW 902 A 1 HETATM 30 H H9 5VW . . . C 3 -36.518 13.613 -63.042 1 20 ? H9 5VW 902 A 1 HETATM 31 H H10 5VW . . . C 3 -37.812 12.423 -62.834 1 20 ? H10 5VW 902 A 1 HETATM 32 H H12 5VW . . . C 3 -37.465 12.665 -59.134 1 20 ? H12 5VW 902 A 1 HETATM 33 H H13 5VW . . . C 3 -38.67 11.414 -57.981 1 20 ? H13 5VW 902 A 1 HETATM 34 H H14 5VW . . . C 3 -37.101 8.967 -56.942 1 20 ? H14 5VW 902 A 1 HETATM 35 H H16 5VW . . . C 3 -39.699 8.765 -55.694 1 20 ? H16 5VW 902 A 1 HETATM 36 H H15 5VW . . . C 3 -38.218 9.534 -55.122 1 20 ? H15 5VW 902 A 1 HETATM 37 H H17 5VW . . . C 3 -37.346 7.611 -54.368 1 20 ? H17 5VW 902 A 1 HETATM 38 H H18 5VW . . . C 3 -39.061 7.339 -54.083 1 20 ? H18 5VW 902 A 1 HETATM 39 H HB6 5VW . . . C 3 -39.207 5.979 -55.847 1 20 ? HB6 5VW 902 A 1 HETATM 40 H H22 5VW . . . C 3 -38.68 6.621 -57.782 1 20 ? H22 5VW 902 A 1 HETATM 41 H H21 5VW . . . C 3 -36.989 6.745 -57.283 1 20 ? H21 5VW 902 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 233 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 41 #