data_5FHF # _model_server_result.job_id Wg4wTRWob_KSHAzrXXdEcg _model_server_result.datetime_utc '2024-12-01 21:28:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5fhf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 5FHF # _exptl.entry_id 5FHF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5FHF _cell.length_a 67.09 _cell.length_b 75.31 _cell.length_c 111.39 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5FHF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 5FHF _atom_sites.fract_transf_matrix[1][1] 0.014905 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013278 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008977 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 501 1 ADP ADP . C 3 ALF A 1 502 1 ALF ALF . D 4 HOH A 1 601 158 HOH HOH . D 4 HOH A 2 602 149 HOH HOH . D 4 HOH A 3 603 148 HOH HOH . D 4 HOH A 4 604 46 HOH HOH . D 4 HOH A 5 605 4 HOH HOH . D 4 HOH A 6 606 162 HOH HOH . D 4 HOH A 7 607 16 HOH HOH . D 4 HOH A 8 608 37 HOH HOH . D 4 HOH A 9 609 204 HOH HOH . D 4 HOH A 10 610 21 HOH HOH . D 4 HOH A 11 611 44 HOH HOH . D 4 HOH A 12 612 24 HOH HOH . D 4 HOH A 13 613 180 HOH HOH . D 4 HOH A 14 614 35 HOH HOH . D 4 HOH A 15 615 30 HOH HOH . D 4 HOH A 16 616 17 HOH HOH . D 4 HOH A 17 617 28 HOH HOH . D 4 HOH A 18 618 155 HOH HOH . D 4 HOH A 19 619 128 HOH HOH . D 4 HOH A 20 620 5 HOH HOH . D 4 HOH A 21 621 82 HOH HOH . D 4 HOH A 22 622 2 HOH HOH . D 4 HOH A 23 623 87 HOH HOH . D 4 HOH A 24 624 131 HOH HOH . D 4 HOH A 25 625 51 HOH HOH . D 4 HOH A 26 626 10 HOH HOH . D 4 HOH A 27 627 15 HOH HOH . D 4 HOH A 28 628 47 HOH HOH . D 4 HOH A 29 629 42 HOH HOH . D 4 HOH A 30 630 31 HOH HOH . D 4 HOH A 31 631 22 HOH HOH . D 4 HOH A 32 632 102 HOH HOH . D 4 HOH A 33 633 205 HOH HOH . D 4 HOH A 34 634 77 HOH HOH . D 4 HOH A 35 635 57 HOH HOH . D 4 HOH A 36 636 68 HOH HOH . D 4 HOH A 37 637 117 HOH HOH . D 4 HOH A 38 638 133 HOH HOH . D 4 HOH A 39 639 14 HOH HOH . D 4 HOH A 40 640 105 HOH HOH . D 4 HOH A 41 641 75 HOH HOH . D 4 HOH A 42 642 23 HOH HOH . D 4 HOH A 43 643 63 HOH HOH . D 4 HOH A 44 644 143 HOH HOH . D 4 HOH A 45 645 6 HOH HOH . D 4 HOH A 46 646 48 HOH HOH . D 4 HOH A 47 647 138 HOH HOH . D 4 HOH A 48 648 53 HOH HOH . D 4 HOH A 49 649 3 HOH HOH . D 4 HOH A 50 650 110 HOH HOH . D 4 HOH A 51 651 7 HOH HOH . D 4 HOH A 52 652 166 HOH HOH . D 4 HOH A 53 653 96 HOH HOH . D 4 HOH A 54 654 19 HOH HOH . D 4 HOH A 55 655 29 HOH HOH . D 4 HOH A 56 656 141 HOH HOH . D 4 HOH A 57 657 182 HOH HOH . D 4 HOH A 58 658 185 HOH HOH . D 4 HOH A 59 659 18 HOH HOH . D 4 HOH A 60 660 146 HOH HOH . D 4 HOH A 61 661 20 HOH HOH . D 4 HOH A 62 662 9 HOH HOH . D 4 HOH A 63 663 134 HOH HOH . D 4 HOH A 64 664 45 HOH HOH . D 4 HOH A 65 665 69 HOH HOH . D 4 HOH A 66 666 103 HOH HOH . D 4 HOH A 67 667 59 HOH HOH . D 4 HOH A 68 668 52 HOH HOH . D 4 HOH A 69 669 12 HOH HOH . D 4 HOH A 70 670 93 HOH HOH . D 4 HOH A 71 671 64 HOH HOH . D 4 HOH A 72 672 60 HOH HOH . D 4 HOH A 73 673 43 HOH HOH . D 4 HOH A 74 674 137 HOH HOH . D 4 HOH A 75 675 34 HOH HOH . D 4 HOH A 76 676 132 HOH HOH . D 4 HOH A 77 677 121 HOH HOH . D 4 HOH A 78 678 104 HOH HOH . D 4 HOH A 79 679 25 HOH HOH . D 4 HOH A 80 680 40 HOH HOH . D 4 HOH A 81 681 1 HOH HOH . D 4 HOH A 82 682 125 HOH HOH . D 4 HOH A 83 683 81 HOH HOH . D 4 HOH A 84 684 66 HOH HOH . D 4 HOH A 85 685 108 HOH HOH . D 4 HOH A 86 686 98 HOH HOH . D 4 HOH A 87 687 56 HOH HOH . D 4 HOH A 88 688 191 HOH HOH . D 4 HOH A 89 689 145 HOH HOH . D 4 HOH A 90 690 61 HOH HOH . D 4 HOH A 91 691 83 HOH HOH . D 4 HOH A 92 692 124 HOH HOH . D 4 HOH A 93 693 32 HOH HOH . D 4 HOH A 94 694 89 HOH HOH . D 4 HOH A 95 695 62 HOH HOH . D 4 HOH A 96 696 165 HOH HOH . D 4 HOH A 97 697 90 HOH HOH . D 4 HOH A 98 698 95 HOH HOH . D 4 HOH A 99 699 11 HOH HOH . D 4 HOH A 100 700 92 HOH HOH . D 4 HOH A 101 701 136 HOH HOH . D 4 HOH A 102 702 85 HOH HOH . D 4 HOH A 103 703 201 HOH HOH . D 4 HOH A 104 704 88 HOH HOH . D 4 HOH A 105 705 199 HOH HOH . D 4 HOH A 106 706 27 HOH HOH . D 4 HOH A 107 707 36 HOH HOH . D 4 HOH A 108 708 97 HOH HOH . D 4 HOH A 109 709 26 HOH HOH . D 4 HOH A 110 710 197 HOH HOH . D 4 HOH A 111 711 65 HOH HOH . D 4 HOH A 112 712 8 HOH HOH . D 4 HOH A 113 713 163 HOH HOH . D 4 HOH A 114 714 38 HOH HOH . D 4 HOH A 115 715 70 HOH HOH . D 4 HOH A 116 716 13 HOH HOH . D 4 HOH A 117 717 160 HOH HOH . D 4 HOH A 118 718 94 HOH HOH . D 4 HOH A 119 719 126 HOH HOH . D 4 HOH A 120 720 168 HOH HOH . D 4 HOH A 121 721 211 HOH HOH . D 4 HOH A 122 722 139 HOH HOH . D 4 HOH A 123 723 167 HOH HOH . D 4 HOH A 124 724 161 HOH HOH . D 4 HOH A 125 725 164 HOH HOH . D 4 HOH A 126 726 147 HOH HOH . D 4 HOH A 127 727 171 HOH HOH . D 4 HOH A 128 728 115 HOH HOH . D 4 HOH A 129 729 154 HOH HOH . D 4 HOH A 130 730 150 HOH HOH . D 4 HOH A 131 731 114 HOH HOH . D 4 HOH A 132 732 113 HOH HOH . D 4 HOH A 133 733 107 HOH HOH . D 4 HOH A 134 734 41 HOH HOH . D 4 HOH A 135 735 119 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . B 2 25.528 0.135 133.637 0.93 30.75 ? PB ADP 501 A 1 HETATM 2 O O1B ADP . . . B 2 25.539 -0.338 132.203 0.93 26.41 ? O1B ADP 501 A 1 HETATM 3 O O2B ADP . . . B 2 26.846 0.688 134.121 0.93 32.29 ? O2B ADP 501 A 1 HETATM 4 O O3B ADP . . . B 2 24.326 0.971 134.007 0.93 32.42 ? O3B ADP 501 A 1 HETATM 5 P PA ADP . . . B 2 26.116 -1.421 135.884 0.93 35.41 ? PA ADP 501 A 1 HETATM 6 O O1A ADP . . . B 2 27.534 -1.84 135.576 0.93 36.26 ? O1A ADP 501 A 1 HETATM 7 O O2A ADP . . . B 2 25.86 -0.21 136.749 0.93 39.78 ? O2A ADP 501 A 1 HETATM 8 O O3A ADP . . . B 2 25.337 -1.217 134.49 0.93 30.53 ? O3A ADP 501 A 1 HETATM 9 O O5' ADP . . . B 2 25.35 -2.678 136.536 0.93 41.17 ? O5' ADP 501 A 1 HETATM 10 C C5' ADP . . . B 2 23.935 -2.65 136.712 0.93 39.54 ? C5' ADP 501 A 1 HETATM 11 C C4' ADP . . . B 2 23.535 -3.671 137.77 0.93 42.58 ? C4' ADP 501 A 1 HETATM 12 O O4' ADP . . . B 2 23.577 -4.987 137.213 0.93 41.54 ? O4' ADP 501 A 1 HETATM 13 C C3' ADP . . . B 2 24.486 -3.637 138.956 0.93 43.55 ? C3' ADP 501 A 1 HETATM 14 O O3' ADP . . . B 2 23.767 -3.329 140.153 0.93 57.4 ? O3' ADP 501 A 1 HETATM 15 C C2' ADP . . . B 2 25.092 -5.022 139.055 0.93 42.5 ? C2' ADP 501 A 1 HETATM 16 O O2' ADP . . . B 2 24.765 -5.611 140.317 0.93 52.45 ? O2' ADP 501 A 1 HETATM 17 C C1' ADP . . . B 2 24.48 -5.837 137.926 0.93 38.92 ? C1' ADP 501 A 1 HETATM 18 N N9 ADP . . . B 2 25.551 -6.308 137.012 0.93 39.8 ? N9 ADP 501 A 1 HETATM 19 C C8 ADP . . . B 2 26.214 -5.55 136.12 0.93 38.88 ? C8 ADP 501 A 1 HETATM 20 N N7 ADP . . . B 2 27.131 -6.284 135.439 0.93 42.44 ? N7 ADP 501 A 1 HETATM 21 C C5 ADP . . . B 2 27.062 -7.546 135.9 0.93 39.68 ? C5 ADP 501 A 1 HETATM 22 C C6 ADP . . . B 2 27.751 -8.827 135.616 0.93 42.18 ? C6 ADP 501 A 1 HETATM 23 N N6 ADP . . . B 2 28.724 -8.905 134.676 0.93 38.79 ? N6 ADP 501 A 1 HETATM 24 N N1 ADP . . . B 2 27.375 -9.914 136.325 0.93 39.62 ? N1 ADP 501 A 1 HETATM 25 C C2 ADP . . . B 2 26.41 -9.85 137.261 0.93 41.91 ? C2 ADP 501 A 1 HETATM 26 N N3 ADP . . . B 2 25.744 -8.723 137.571 0.93 43.6 ? N3 ADP 501 A 1 HETATM 27 C C4 ADP . . . B 2 26.018 -7.557 136.937 0.93 39.38 ? C4 ADP 501 A 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 236 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #