data_5FHH # _model_server_result.job_id SVkMN9L-hNXYUFSbXq1YeQ _model_server_result.datetime_utc '2024-11-29 16:54:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5fhh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":701}' # _entry.id 5FHH # _exptl.entry_id 5FHH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5FHH _cell.length_a 204.75 _cell.length_b 204.75 _cell.length_c 77.791 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5FHH _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D 1 1 B,E,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id O _struct_conn.ptnr1_label_comp_id PHE _struct_conn.ptnr1_label_seq_id 397 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id PHE _struct_conn.ptnr1_auth_seq_id 596 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id CD _struct_conn.ptnr2_label_comp_id PRO _struct_conn.ptnr2_label_seq_id 399 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id PRO _struct_conn.ptnr2_auth_seq_id 598 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.493 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 5FHH _atom_sites.fract_transf_matrix[1][1] 0.004884 _atom_sites.fract_transf_matrix[1][2] 0.00282 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00564 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012855 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ADP A 1 701 1 ADP ADP . D 3 ALF A 1 702 2 ALF ALF . E 2 ADP B 1 701 2 ADP ADP . F 3 ALF B 1 702 3 ALF ALF . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . E 2 -63.957 22.191 -29.453 1 134.27 ? PB ADP 701 B 1 HETATM 2 O O1B ADP . . . E 2 -64.086 20.966 -30.327 1 133.69 ? O1B ADP 701 B 1 HETATM 3 O O2B ADP . . . E 2 -62.913 22.1 -28.366 1 129.19 ? O2B ADP 701 B 1 HETATM 4 O O3B ADP . . . E 2 -63.976 23.489 -30.212 1 135.38 ? O3B ADP 701 B 1 HETATM 5 P PA ADP . . . E 2 -65.686 23.588 -27.799 1 144.31 ? PA ADP 701 B 1 HETATM 6 O O1A ADP . . . E 2 -65.936 24.621 -28.865 1 141.34 ? O1A ADP 701 B 1 HETATM 7 O O2A ADP . . . E 2 -66.843 23.336 -26.855 1 143.74 ? O2A ADP 701 B 1 HETATM 8 O O3A ADP . . . E 2 -65.32 22.252 -28.614 1 139.43 ? O3A ADP 701 B 1 HETATM 9 O O5' ADP . . . E 2 -64.408 24.037 -26.89 1 146.67 ? O5' ADP 701 B 1 HETATM 10 C C5' ADP . . . E 2 -64.576 24.976 -25.804 1 148.72 ? C5' ADP 701 B 1 HETATM 11 C C4' ADP . . . E 2 -63.345 25.367 -24.969 1 154.2 ? C4' ADP 701 B 1 HETATM 12 O O4' ADP . . . E 2 -62.586 26.442 -25.569 1 155.77 ? O4' ADP 701 B 1 HETATM 13 C C3' ADP . . . E 2 -63.796 25.89 -23.611 1 152.62 ? C3' ADP 701 B 1 HETATM 14 O O3' ADP . . . E 2 -63.545 24.966 -22.546 1 152.51 ? O3' ADP 701 B 1 HETATM 15 C C2' ADP . . . E 2 -63.018 27.17 -23.378 1 154.64 ? C2' ADP 701 B 1 HETATM 16 O O2' ADP . . . E 2 -62.269 27.11 -22.156 1 155.47 ? O2' ADP 701 B 1 HETATM 17 C C1' ADP . . . E 2 -62.14 27.413 -24.602 1 157.16 ? C1' ADP 701 B 1 HETATM 18 N N9 ADP . . . E 2 -62.466 28.83 -24.929 1 152.92 ? N9 ADP 701 B 1 HETATM 19 C C8 ADP . . . E 2 -63.088 29.316 -26.021 1 152.18 ? C8 ADP 701 B 1 HETATM 20 N N7 ADP . . . E 2 -63.235 30.66 -25.939 1 154.13 ? N7 ADP 701 B 1 HETATM 21 C C5 ADP . . . E 2 -62.725 31.061 -24.763 1 152.21 ? C5 ADP 701 B 1 HETATM 22 C C6 ADP . . . E 2 -62.57 32.357 -24.066 1 151.3 ? C6 ADP 701 B 1 HETATM 23 N N6 ADP . . . E 2 -63.023 33.501 -24.633 1 150.62 ? N6 ADP 701 B 1 HETATM 24 N N1 ADP . . . E 2 -61.966 32.341 -22.861 1 151.29 ? N1 ADP 701 B 1 HETATM 25 C C2 ADP . . . E 2 -61.525 31.193 -22.31 1 149.92 ? C2 ADP 701 B 1 HETATM 26 N N3 ADP . . . E 2 -61.634 29.986 -22.89 1 148.88 ? N3 ADP 701 B 1 HETATM 27 C C4 ADP . . . E 2 -62.215 29.852 -24.104 1 150.12 ? C4 ADP 701 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 249 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #