data_5FHZ # _model_server_result.job_id ZCiSqUYbdT9oc3AFEqz5xQ _model_server_result.datetime_utc '2024-12-21 14:25:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5fhz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":601}' # _entry.id 5FHZ # _exptl.entry_id 5FHZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.69 _cell.angle_gamma 90 _cell.entry_id 5FHZ _cell.length_a 82.656 _cell.length_b 159.785 _cell.length_c 177.647 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5FHZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,I,J,K,L,M,N,O,P,U,V,W,X 1 1 E,F,G,H,Q,R,S,T,Y,Z,AA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 I N N ? 2 K N N ? 2 M N N ? 2 O N N ? 2 Q N N ? 2 R N N ? 2 S N N ? 2 T N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 237 n n PA O2A NAD sing 238 n n PA O5B NAD sing 239 n n PA O3 NAD sing 240 n n O2A HOA2 NAD sing 241 n n O5B C5B NAD sing 242 n n C5B C4B NAD sing 243 n n C5B H51A NAD sing 244 n n C5B H52A NAD sing 245 n n C4B O4B NAD sing 246 n n C4B C3B NAD sing 247 n n C4B H4B NAD sing 248 n n O4B C1B NAD sing 249 n n C3B O3B NAD sing 250 n n C3B C2B NAD sing 251 n n C3B H3B NAD sing 252 n n O3B HO3A NAD sing 253 n n C2B O2B NAD sing 254 n n C2B C1B NAD sing 255 n n C2B H2B NAD sing 256 n n O2B HO2A NAD sing 257 n n C1B N9A NAD sing 258 n n C1B H1B NAD sing 259 n n N9A C8A NAD sing 260 n y N9A C4A NAD sing 261 n y C8A N7A NAD doub 262 n y C8A H8A NAD sing 263 n n N7A C5A NAD sing 264 n y C5A C6A NAD sing 265 n y C5A C4A NAD doub 266 n y C6A N6A NAD sing 267 n n C6A N1A NAD doub 268 n y N6A H61A NAD sing 269 n n N6A H62A NAD sing 270 n n N1A C2A NAD sing 271 n y C2A N3A NAD doub 272 n y C2A H2A NAD sing 273 n n N3A C4A NAD sing 274 n y O3 PN NAD sing 275 n n PN O1N NAD doub 276 n n PN O2N NAD sing 277 n n PN O5D NAD sing 278 n n O5D C5D NAD sing 279 n n C5D C4D NAD sing 280 n n C5D H51N NAD sing 281 n n C5D H52N NAD sing 282 n n C4D O4D NAD sing 283 n n C4D C3D NAD sing 284 n n C4D H4D NAD sing 285 n n O4D C1D NAD sing 286 n n C3D O3D NAD sing 287 n n C3D C2D NAD sing 288 n n C3D H3D NAD sing 289 n n O3D HO3N NAD sing 290 n n C2D O2D NAD sing 291 n n C2D C1D NAD sing 292 n n C2D H2D NAD sing 293 n n O2D HO2N NAD sing 294 n n C1D N1N NAD sing 295 n n C1D H1D NAD sing 296 n n N1N C2N NAD sing 297 n y N1N C6N NAD doub 298 n y C2N C3N NAD doub 299 n y C2N H2N NAD sing 300 n n C3N C7N NAD sing 301 n n C3N C4N NAD sing 302 n y C7N O7N NAD doub 303 n n C7N N7N NAD sing 304 n n N7N H71N NAD sing 305 n n N7N H72N NAD sing 306 n n C4N C5N NAD doub 307 n y C4N H4N NAD sing 308 n n C5N C6N NAD sing 309 n y C5N H5N NAD sing 310 n n C6N H6N NAD sing 311 n n # _atom_sites.entry_id 5FHZ _atom_sites.fract_transf_matrix[1][1] 0.012098 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00078 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006258 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005641 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 NAD A 1 601 1 NAD NAD . J 3 REA A 1 602 1 REA REA . K 2 NAD B 1 601 2 NAD NAD . L 3 REA B 1 602 2 REA REA . M 2 NAD C 1 601 3 NAD NAD . N 3 REA C 1 602 3 REA REA . O 2 NAD D 1 601 4 NAD NAD . P 3 REA D 1 602 4 REA REA . Q 2 NAD E 1 601 5 NAD NAD . R 2 NAD F 1 601 6 NAD NAD . S 2 NAD G 1 601 7 NAD NAD . T 2 NAD H 1 601 8 NAD NAD . U 4 HOH A 1 701 63 HOH HOH . U 4 HOH A 2 702 30 HOH HOH . U 4 HOH A 3 703 45 HOH HOH . U 4 HOH A 4 704 60 HOH HOH . U 4 HOH A 5 705 21 HOH HOH . U 4 HOH A 6 706 47 HOH HOH . U 4 HOH A 7 707 43 HOH HOH . U 4 HOH A 8 708 28 HOH HOH . U 4 HOH A 9 709 33 HOH HOH . U 4 HOH A 10 710 38 HOH HOH . U 4 HOH A 11 711 26 HOH HOH . U 4 HOH A 12 712 32 HOH HOH . U 4 HOH A 13 713 12 HOH HOH . U 4 HOH A 14 714 20 HOH HOH . U 4 HOH A 15 715 4 HOH HOH . U 4 HOH A 16 716 41 HOH HOH . U 4 HOH A 17 717 34 HOH HOH . U 4 HOH A 18 718 8 HOH HOH . U 4 HOH A 19 719 50 HOH HOH . V 4 HOH B 1 701 11 HOH HOH . V 4 HOH B 2 702 55 HOH HOH . V 4 HOH B 3 703 7 HOH HOH . V 4 HOH B 4 704 62 HOH HOH . V 4 HOH B 5 705 39 HOH HOH . V 4 HOH B 6 706 24 HOH HOH . V 4 HOH B 7 707 22 HOH HOH . V 4 HOH B 8 708 13 HOH HOH . V 4 HOH B 9 709 19 HOH HOH . V 4 HOH B 10 710 44 HOH HOH . V 4 HOH B 11 711 56 HOH HOH . V 4 HOH B 12 712 3 HOH HOH . V 4 HOH B 13 713 54 HOH HOH . V 4 HOH B 14 714 16 HOH HOH . V 4 HOH B 15 715 53 HOH HOH . W 4 HOH C 1 701 35 HOH HOH . W 4 HOH C 2 702 49 HOH HOH . W 4 HOH C 3 703 25 HOH HOH . W 4 HOH C 4 704 15 HOH HOH . W 4 HOH C 5 705 17 HOH HOH . W 4 HOH C 6 706 14 HOH HOH . W 4 HOH C 7 707 31 HOH HOH . W 4 HOH C 8 708 48 HOH HOH . W 4 HOH C 9 709 51 HOH HOH . X 4 HOH D 1 701 52 HOH HOH . X 4 HOH D 2 702 58 HOH HOH . X 4 HOH D 3 703 40 HOH HOH . X 4 HOH D 4 704 1 HOH HOH . X 4 HOH D 5 705 23 HOH HOH . X 4 HOH D 6 706 61 HOH HOH . X 4 HOH D 7 707 5 HOH HOH . X 4 HOH D 8 708 18 HOH HOH . X 4 HOH D 9 709 46 HOH HOH . X 4 HOH D 10 710 36 HOH HOH . X 4 HOH D 11 711 2 HOH HOH . X 4 HOH D 12 712 57 HOH HOH . Y 4 HOH E 1 701 10 HOH HOH . Y 4 HOH E 2 702 27 HOH HOH . Z 4 HOH F 1 701 59 HOH HOH . Z 4 HOH F 2 702 29 HOH HOH . Z 4 HOH F 3 703 6 HOH HOH . Z 4 HOH F 4 704 9 HOH HOH . AA 4 HOH H 1 701 42 HOH HOH . AA 4 HOH H 2 702 37 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . Q 2 -8.159 111.368 160.349 1 75.77 ? PA NAD 601 E 1 HETATM 2 O O1A NAD . . . Q 2 -6.756 110.922 160.67 1 69.28 ? O1A NAD 601 E 1 HETATM 3 O O2A NAD . . . Q 2 -8.527 112.828 160.479 1 72.44 ? O2A NAD 601 E 1 HETATM 4 O O5B NAD . . . Q 2 -9.244 110.471 161.134 1 70.29 ? O5B NAD 601 E 1 HETATM 5 C C5B NAD . . . Q 2 -8.945 109.337 161.932 1 63.24 ? C5B NAD 601 E 1 HETATM 6 C C4B NAD . . . Q 2 -9.403 109.666 163.338 1 63.14 ? C4B NAD 601 E 1 HETATM 7 O O4B NAD . . . Q 2 -8.606 110.741 163.84 1 64.01 ? O4B NAD 601 E 1 HETATM 8 C C3B NAD . . . Q 2 -10.854 110.136 163.412 1 61.58 ? C3B NAD 601 E 1 HETATM 9 O O3B NAD . . . Q 2 -11.651 109.295 164.252 1 58.91 ? O3B NAD 601 E 1 HETATM 10 C C2B NAD . . . Q 2 -10.762 111.538 163.976 1 61.69 ? C2B NAD 601 E 1 HETATM 11 O O2B NAD . . . Q 2 -11.862 111.812 164.833 1 61.64 ? O2B NAD 601 E 1 HETATM 12 C C1B NAD . . . Q 2 -9.423 111.536 164.693 1 62.64 ? C1B NAD 601 E 1 HETATM 13 N N9A NAD . . . Q 2 -8.805 112.869 164.919 1 63.7 ? N9A NAD 601 E 1 HETATM 14 C C8A NAD . . . Q 2 -8.906 113.952 164.126 1 67.14 ? C8A NAD 601 E 1 HETATM 15 N N7A NAD . . . Q 2 -8.208 114.989 164.648 1 69.25 ? N7A NAD 601 E 1 HETATM 16 C C5A NAD . . . Q 2 -7.634 114.581 165.79 1 64.39 ? C5A NAD 601 E 1 HETATM 17 C C6A NAD . . . Q 2 -6.763 115.177 166.832 1 60.91 ? C6A NAD 601 E 1 HETATM 18 N N6A NAD . . . Q 2 -6.366 116.46 166.724 1 56.73 ? N6A NAD 601 E 1 HETATM 19 N N1A NAD . . . Q 2 -6.375 114.416 167.885 1 61.41 ? N1A NAD 601 E 1 HETATM 20 C C2A NAD . . . Q 2 -6.76 113.137 167.989 1 60.45 ? C2A NAD 601 E 1 HETATM 21 N N3A NAD . . . Q 2 -7.559 112.54 167.073 1 63.65 ? N3A NAD 601 E 1 HETATM 22 C C4A NAD . . . Q 2 -8.03 113.184 165.969 1 63.9 ? C4A NAD 601 E 1 HETATM 23 O O3 NAD . . . Q 2 -8.481 110.911 158.849 1 78.03 ? O3 NAD 601 E 1 HETATM 24 P PN NAD . . . Q 2 -9.955 110.384 158.508 1 82.15 ? PN NAD 601 E 1 HETATM 25 O O1N NAD . . . Q 2 -10.984 111.15 159.304 1 81.13 ? O1N NAD 601 E 1 HETATM 26 O O2N NAD . . . Q 2 -9.957 108.893 158.72 1 73.01 ? O2N NAD 601 E 1 HETATM 27 O O5D NAD . . . Q 2 -10.068 110.791 156.935 1 86.36 ? O5D NAD 601 E 1 HETATM 28 C C5D NAD . . . Q 2 -9.702 112.059 156.351 1 84.72 ? C5D NAD 601 E 1 HETATM 29 C C4D NAD . . . Q 2 -8.598 111.973 155.257 1 93.43 ? C4D NAD 601 E 1 HETATM 30 O O4D NAD . . . Q 2 -7.489 111.146 155.66 1 102.9 ? O4D NAD 601 E 1 HETATM 31 C C3D NAD . . . Q 2 -9.019 111.432 153.883 1 90.77 ? C3D NAD 601 E 1 HETATM 32 O O3D NAD . . . Q 2 -8.794 112.404 152.85 1 88.45 ? O3D NAD 601 E 1 HETATM 33 C C2D NAD . . . Q 2 -8.195 110.172 153.617 1 90.6 ? C2D NAD 601 E 1 HETATM 34 O O2D NAD . . . Q 2 -7.536 110.201 152.346 1 85.13 ? O2D NAD 601 E 1 HETATM 35 C C1D NAD . . . Q 2 -7.151 110.1 154.721 1 96.76 ? C1D NAD 601 E 1 HETATM 36 N N1N NAD . . . Q 2 -7.11 108.798 155.427 1 100.34 ? N1N NAD 601 E 1 HETATM 37 C C2N NAD . . . Q 2 -6.072 107.936 155.311 1 99.91 ? C2N NAD 601 E 1 HETATM 38 C C3N NAD . . . Q 2 -6.08 106.727 156.031 1 103.06 ? C3N NAD 601 E 1 HETATM 39 C C7N NAD . . . Q 2 -5.002 105.692 155.939 1 102.79 ? C7N NAD 601 E 1 HETATM 40 O O7N NAD . . . Q 2 -4.541 105.179 156.952 1 103.3 ? O7N NAD 601 E 1 HETATM 41 N N7N NAD . . . Q 2 -4.637 105.326 154.713 1 101.07 ? N7N NAD 601 E 1 HETATM 42 C C4N NAD . . . Q 2 -7.147 106.414 156.855 1 104.75 ? C4N NAD 601 E 1 HETATM 43 C C5N NAD . . . Q 2 -8.188 107.315 156.96 1 104.84 ? C5N NAD 601 E 1 HETATM 44 C C6N NAD . . . Q 2 -8.137 108.498 156.238 1 103.05 ? C6N NAD 601 E 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 43 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 44 #