data_5FHZ # _model_server_result.job_id uXIIqVsJflfQX3R4f68muA _model_server_result.datetime_utc '2024-12-21 14:19:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5fhz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":602}' # _entry.id 5FHZ # _exptl.entry_id 5FHZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 300.435 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'RETINOIC ACID' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.69 _cell.angle_gamma 90 _cell.entry_id 5FHZ _cell.length_a 82.656 _cell.length_b 159.785 _cell.length_c 177.647 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5FHZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,I,J,K,L,M,N,O,P,U,V,W,X 1 1 E,F,G,H,Q,R,S,T,Y,Z,AA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 J N N ? 3 L N N ? 3 N N N ? 3 P N N # _chem_comp.formula 'C20 H28 O2' _chem_comp.formula_weight 300.435 _chem_comp.id REA _chem_comp.mon_nstd_flag . _chem_comp.name 'RETINOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 REA sing 352 n n C1 C6 REA sing 353 n n C1 C16 REA sing 354 n n C1 C17 REA sing 355 n n C2 C3 REA sing 356 n n C2 H21 REA sing 357 n n C2 H22 REA sing 358 n n C3 C4 REA sing 359 n n C3 H31 REA sing 360 n n C3 H32 REA sing 361 n n C4 C5 REA sing 362 n n C4 H41 REA sing 363 n n C4 H42 REA sing 364 n n C5 C6 REA doub 365 n n C5 C18 REA sing 366 n n C6 C7 REA sing 367 n n C7 C8 REA doub 368 e n C7 H7 REA sing 369 n n C8 C9 REA sing 370 n n C8 H8 REA sing 371 n n C9 C10 REA doub 372 e n C9 C19 REA sing 373 n n C10 C11 REA sing 374 n n C10 H10 REA sing 375 n n C11 C12 REA doub 376 e n C11 H11 REA sing 377 n n C12 C13 REA sing 378 n n C12 H12 REA sing 379 n n C13 C14 REA doub 380 e n C13 C20 REA sing 381 n n C14 C15 REA sing 382 n n C14 H14 REA sing 383 n n C15 O1 REA doub 384 n n C15 O2 REA sing 385 n n C16 H161 REA sing 386 n n C16 H162 REA sing 387 n n C16 H163 REA sing 388 n n C17 H171 REA sing 389 n n C17 H172 REA sing 390 n n C17 H173 REA sing 391 n n C18 H181 REA sing 392 n n C18 H182 REA sing 393 n n C18 H183 REA sing 394 n n C19 H191 REA sing 395 n n C19 H192 REA sing 396 n n C19 H193 REA sing 397 n n C20 H201 REA sing 398 n n C20 H202 REA sing 399 n n C20 H203 REA sing 400 n n O2 HO2 REA sing 401 n n # _atom_sites.entry_id 5FHZ _atom_sites.fract_transf_matrix[1][1] 0.012098 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00078 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006258 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005641 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 NAD A 1 601 1 NAD NAD . J 3 REA A 1 602 1 REA REA . K 2 NAD B 1 601 2 NAD NAD . L 3 REA B 1 602 2 REA REA . M 2 NAD C 1 601 3 NAD NAD . N 3 REA C 1 602 3 REA REA . O 2 NAD D 1 601 4 NAD NAD . P 3 REA D 1 602 4 REA REA . Q 2 NAD E 1 601 5 NAD NAD . R 2 NAD F 1 601 6 NAD NAD . S 2 NAD G 1 601 7 NAD NAD . T 2 NAD H 1 601 8 NAD NAD . U 4 HOH A 1 701 63 HOH HOH . U 4 HOH A 2 702 30 HOH HOH . U 4 HOH A 3 703 45 HOH HOH . U 4 HOH A 4 704 60 HOH HOH . U 4 HOH A 5 705 21 HOH HOH . U 4 HOH A 6 706 47 HOH HOH . U 4 HOH A 7 707 43 HOH HOH . U 4 HOH A 8 708 28 HOH HOH . U 4 HOH A 9 709 33 HOH HOH . U 4 HOH A 10 710 38 HOH HOH . U 4 HOH A 11 711 26 HOH HOH . U 4 HOH A 12 712 32 HOH HOH . U 4 HOH A 13 713 12 HOH HOH . U 4 HOH A 14 714 20 HOH HOH . U 4 HOH A 15 715 4 HOH HOH . U 4 HOH A 16 716 41 HOH HOH . U 4 HOH A 17 717 34 HOH HOH . U 4 HOH A 18 718 8 HOH HOH . U 4 HOH A 19 719 50 HOH HOH . V 4 HOH B 1 701 11 HOH HOH . V 4 HOH B 2 702 55 HOH HOH . V 4 HOH B 3 703 7 HOH HOH . V 4 HOH B 4 704 62 HOH HOH . V 4 HOH B 5 705 39 HOH HOH . V 4 HOH B 6 706 24 HOH HOH . V 4 HOH B 7 707 22 HOH HOH . V 4 HOH B 8 708 13 HOH HOH . V 4 HOH B 9 709 19 HOH HOH . V 4 HOH B 10 710 44 HOH HOH . V 4 HOH B 11 711 56 HOH HOH . V 4 HOH B 12 712 3 HOH HOH . V 4 HOH B 13 713 54 HOH HOH . V 4 HOH B 14 714 16 HOH HOH . V 4 HOH B 15 715 53 HOH HOH . W 4 HOH C 1 701 35 HOH HOH . W 4 HOH C 2 702 49 HOH HOH . W 4 HOH C 3 703 25 HOH HOH . W 4 HOH C 4 704 15 HOH HOH . W 4 HOH C 5 705 17 HOH HOH . W 4 HOH C 6 706 14 HOH HOH . W 4 HOH C 7 707 31 HOH HOH . W 4 HOH C 8 708 48 HOH HOH . W 4 HOH C 9 709 51 HOH HOH . X 4 HOH D 1 701 52 HOH HOH . X 4 HOH D 2 702 58 HOH HOH . X 4 HOH D 3 703 40 HOH HOH . X 4 HOH D 4 704 1 HOH HOH . X 4 HOH D 5 705 23 HOH HOH . X 4 HOH D 6 706 61 HOH HOH . X 4 HOH D 7 707 5 HOH HOH . X 4 HOH D 8 708 18 HOH HOH . X 4 HOH D 9 709 46 HOH HOH . X 4 HOH D 10 710 36 HOH HOH . X 4 HOH D 11 711 2 HOH HOH . X 4 HOH D 12 712 57 HOH HOH . Y 4 HOH E 1 701 10 HOH HOH . Y 4 HOH E 2 702 27 HOH HOH . Z 4 HOH F 1 701 59 HOH HOH . Z 4 HOH F 2 702 29 HOH HOH . Z 4 HOH F 3 703 6 HOH HOH . Z 4 HOH F 4 704 9 HOH HOH . AA 4 HOH H 1 701 42 HOH HOH . AA 4 HOH H 2 702 37 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 REA . . . L 3 30.712 75.205 94.246 1 23.14 ? C1 REA 602 B 1 HETATM 2 C C2 REA . . . L 3 30.886 74.33 93.005 1 16.25 ? C2 REA 602 B 1 HETATM 3 C C3 REA . . . L 3 31.616 73.039 93.295 1 19.48 ? C3 REA 602 B 1 HETATM 4 C C4 REA . . . L 3 31.443 72.547 94.729 1 23.45 ? C4 REA 602 B 1 HETATM 5 C C5 REA . . . L 3 32.04 73.633 95.554 1 26.51 ? C5 REA 602 B 1 HETATM 6 C C6 REA . . . L 3 31.392 74.784 95.543 1 26.94 ? C6 REA 602 B 1 HETATM 7 C C7 REA . . . L 3 31.321 75.693 96.719 1 29.08 ? C7 REA 602 B 1 HETATM 8 C C8 REA . . . L 3 31.752 75.367 97.94 1 35.65 ? C8 REA 602 B 1 HETATM 9 C C9 REA . . . L 3 31.619 76.326 99.07 1 47.98 ? C9 REA 602 B 1 HETATM 10 C C10 REA . . . L 3 32.014 75.864 100.287 1 45.65 ? C10 REA 602 B 1 HETATM 11 C C11 REA . . . L 3 31.945 76.645 101.53 1 43.38 ? C11 REA 602 B 1 HETATM 12 C C12 REA . . . L 3 32.324 76.082 102.682 1 46.65 ? C12 REA 602 B 1 HETATM 13 C C13 REA . . . L 3 32.22 76.83 103.945 1 52.57 ? C13 REA 602 B 1 HETATM 14 C C14 REA . . . L 3 32.417 76.147 105.079 1 57.88 ? C14 REA 602 B 1 HETATM 15 C C15 REA . . . L 3 32.321 76.78 106.403 1 59.13 ? C15 REA 602 B 1 HETATM 16 C C16 REA . . . L 3 29.233 75.231 94.535 1 26.72 ? C16 REA 602 B 1 HETATM 17 C C17 REA . . . L 3 31.131 76.628 93.934 1 20.5 ? C17 REA 602 B 1 HETATM 18 C C18 REA . . . L 3 33.383 73.426 96.223 1 26.89 ? C18 REA 602 B 1 HETATM 19 C C19 REA . . . L 3 31.08 77.74 98.831 1 48.12 ? C19 REA 602 B 1 HETATM 20 C C20 REA . . . L 3 31.834 78.287 103.904 1 46.41 ? C20 REA 602 B 1 HETATM 21 O O1 REA . . . L 3 31.906 77.963 106.532 1 49.28 ? O1 REA 602 B 1 HETATM 22 O O2 REA . . . L 3 32.665 76.069 107.37 1 64.58 ? O2 REA 602 B 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 32 _model_server_stats.create_model_time_ms 114 _model_server_stats.query_time_ms 1043 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 22 #