data_5FI4 # _model_server_result.job_id iVj3bF4c2lhuvsRotVX-iQ _model_server_result.datetime_utc '2025-01-10 10:50:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5fi4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1101}' # _entry.id 5FI4 # _exptl.entry_id 5FI4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5FI4 _cell.length_a 105.2 _cell.length_b 105.32 _cell.length_c 134.39 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5FI4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 173 n n C1 C2 GOL sing 174 n n C1 H11 GOL sing 175 n n C1 H12 GOL sing 176 n n O1 HO1 GOL sing 177 n n C2 O2 GOL sing 178 n n C2 C3 GOL sing 179 n n C2 H2 GOL sing 180 n n O2 HO2 GOL sing 181 n n C3 O3 GOL sing 182 n n C3 H31 GOL sing 183 n n C3 H32 GOL sing 184 n n O3 HO3 GOL sing 185 n n # _atom_sites.entry_id 5FI4 _atom_sites.fract_transf_matrix[1][1] 0.009506 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009495 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007441 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL A 1 1101 1 GOL GOL . D 4 5XV A 1 1102 2 5XV LI1 . E 5 HOH A 1 1201 58 HOH HOH . E 5 HOH A 2 1202 237 HOH HOH . E 5 HOH A 3 1203 177 HOH HOH . E 5 HOH A 4 1204 23 HOH HOH . E 5 HOH A 5 1205 132 HOH HOH . E 5 HOH A 6 1206 67 HOH HOH . E 5 HOH A 7 1207 197 HOH HOH . E 5 HOH A 8 1208 44 HOH HOH . E 5 HOH A 9 1209 70 HOH HOH . E 5 HOH A 10 1210 245 HOH HOH . E 5 HOH A 11 1211 52 HOH HOH . E 5 HOH A 12 1212 251 HOH HOH . E 5 HOH A 13 1213 65 HOH HOH . E 5 HOH A 14 1214 140 HOH HOH . E 5 HOH A 15 1215 193 HOH HOH . E 5 HOH A 16 1216 71 HOH HOH . E 5 HOH A 17 1217 92 HOH HOH . E 5 HOH A 18 1218 235 HOH HOH . E 5 HOH A 19 1219 121 HOH HOH . E 5 HOH A 20 1220 50 HOH HOH . E 5 HOH A 21 1221 89 HOH HOH . E 5 HOH A 22 1222 104 HOH HOH . E 5 HOH A 23 1223 35 HOH HOH . E 5 HOH A 24 1224 11 HOH HOH . E 5 HOH A 25 1225 3 HOH HOH . E 5 HOH A 26 1226 123 HOH HOH . E 5 HOH A 27 1227 9 HOH HOH . E 5 HOH A 28 1228 116 HOH HOH . E 5 HOH A 29 1229 119 HOH HOH . E 5 HOH A 30 1230 184 HOH HOH . E 5 HOH A 31 1231 243 HOH HOH . E 5 HOH A 32 1232 42 HOH HOH . E 5 HOH A 33 1233 226 HOH HOH . E 5 HOH A 34 1234 30 HOH HOH . E 5 HOH A 35 1235 59 HOH HOH . E 5 HOH A 36 1236 101 HOH HOH . E 5 HOH A 37 1237 122 HOH HOH . E 5 HOH A 38 1238 191 HOH HOH . E 5 HOH A 39 1239 106 HOH HOH . E 5 HOH A 40 1240 110 HOH HOH . E 5 HOH A 41 1241 194 HOH HOH . E 5 HOH A 42 1242 16 HOH HOH . E 5 HOH A 43 1243 262 HOH HOH . E 5 HOH A 44 1244 55 HOH HOH . E 5 HOH A 45 1245 166 HOH HOH . E 5 HOH A 46 1246 242 HOH HOH . E 5 HOH A 47 1247 250 HOH HOH . E 5 HOH A 48 1248 180 HOH HOH . E 5 HOH A 49 1249 10 HOH HOH . E 5 HOH A 50 1250 1 HOH HOH . E 5 HOH A 51 1251 36 HOH HOH . E 5 HOH A 52 1252 97 HOH HOH . E 5 HOH A 53 1253 68 HOH HOH . E 5 HOH A 54 1254 125 HOH HOH . E 5 HOH A 55 1255 105 HOH HOH . E 5 HOH A 56 1256 14 HOH HOH . E 5 HOH A 57 1257 199 HOH HOH . E 5 HOH A 58 1258 263 HOH HOH . E 5 HOH A 59 1259 8 HOH HOH . E 5 HOH A 60 1260 46 HOH HOH . E 5 HOH A 61 1261 7 HOH HOH . E 5 HOH A 62 1262 94 HOH HOH . E 5 HOH A 63 1263 178 HOH HOH . E 5 HOH A 64 1264 190 HOH HOH . E 5 HOH A 65 1265 141 HOH HOH . E 5 HOH A 66 1266 12 HOH HOH . E 5 HOH A 67 1267 179 HOH HOH . E 5 HOH A 68 1268 189 HOH HOH . E 5 HOH A 69 1269 145 HOH HOH . E 5 HOH A 70 1270 87 HOH HOH . E 5 HOH A 71 1271 37 HOH HOH . E 5 HOH A 72 1272 181 HOH HOH . E 5 HOH A 73 1273 206 HOH HOH . E 5 HOH A 74 1274 150 HOH HOH . E 5 HOH A 75 1275 13 HOH HOH . E 5 HOH A 76 1276 27 HOH HOH . E 5 HOH A 77 1277 204 HOH HOH . E 5 HOH A 78 1278 49 HOH HOH . E 5 HOH A 79 1279 34 HOH HOH . E 5 HOH A 80 1280 220 HOH HOH . E 5 HOH A 81 1281 212 HOH HOH . E 5 HOH A 82 1282 240 HOH HOH . E 5 HOH A 83 1283 146 HOH HOH . E 5 HOH A 84 1284 4 HOH HOH . E 5 HOH A 85 1285 15 HOH HOH . E 5 HOH A 86 1286 143 HOH HOH . E 5 HOH A 87 1287 84 HOH HOH . E 5 HOH A 88 1288 17 HOH HOH . E 5 HOH A 89 1289 218 HOH HOH . E 5 HOH A 90 1290 62 HOH HOH . E 5 HOH A 91 1291 198 HOH HOH . E 5 HOH A 92 1292 88 HOH HOH . E 5 HOH A 93 1293 115 HOH HOH . E 5 HOH A 94 1294 47 HOH HOH . E 5 HOH A 95 1295 186 HOH HOH . E 5 HOH A 96 1296 257 HOH HOH . E 5 HOH A 97 1297 32 HOH HOH . E 5 HOH A 98 1298 117 HOH HOH . E 5 HOH A 99 1299 158 HOH HOH . E 5 HOH A 100 1300 192 HOH HOH . E 5 HOH A 101 1301 208 HOH HOH . E 5 HOH A 102 1302 43 HOH HOH . E 5 HOH A 103 1303 153 HOH HOH . E 5 HOH A 104 1304 215 HOH HOH . E 5 HOH A 105 1305 183 HOH HOH . E 5 HOH A 106 1306 229 HOH HOH . E 5 HOH A 107 1307 210 HOH HOH . E 5 HOH A 108 1308 45 HOH HOH . E 5 HOH A 109 1309 130 HOH HOH . E 5 HOH A 110 1310 25 HOH HOH . E 5 HOH A 111 1311 126 HOH HOH . E 5 HOH A 112 1312 131 HOH HOH . E 5 HOH A 113 1313 205 HOH HOH . E 5 HOH A 114 1314 103 HOH HOH . E 5 HOH A 115 1315 6 HOH HOH . E 5 HOH A 116 1316 163 HOH HOH . E 5 HOH A 117 1317 156 HOH HOH . E 5 HOH A 118 1318 33 HOH HOH . E 5 HOH A 119 1319 230 HOH HOH . E 5 HOH A 120 1320 81 HOH HOH . E 5 HOH A 121 1321 83 HOH HOH . E 5 HOH A 122 1322 173 HOH HOH . E 5 HOH A 123 1323 60 HOH HOH . E 5 HOH A 124 1324 86 HOH HOH . E 5 HOH A 125 1325 152 HOH HOH . E 5 HOH A 126 1326 207 HOH HOH . E 5 HOH A 127 1327 196 HOH HOH . E 5 HOH A 128 1328 187 HOH HOH . E 5 HOH A 129 1329 107 HOH HOH . E 5 HOH A 130 1330 175 HOH HOH . E 5 HOH A 131 1331 100 HOH HOH . E 5 HOH A 132 1332 96 HOH HOH . E 5 HOH A 133 1333 138 HOH HOH . E 5 HOH A 134 1334 162 HOH HOH . E 5 HOH A 135 1335 90 HOH HOH . E 5 HOH A 136 1336 72 HOH HOH . E 5 HOH A 137 1337 168 HOH HOH . E 5 HOH A 138 1338 171 HOH HOH . E 5 HOH A 139 1339 151 HOH HOH . E 5 HOH A 140 1340 239 HOH HOH . E 5 HOH A 141 1341 248 HOH HOH . E 5 HOH A 142 1342 147 HOH HOH . E 5 HOH A 143 1343 95 HOH HOH . E 5 HOH A 144 1344 75 HOH HOH . E 5 HOH A 145 1345 31 HOH HOH . E 5 HOH A 146 1346 169 HOH HOH . E 5 HOH A 147 1347 61 HOH HOH . E 5 HOH A 148 1348 136 HOH HOH . E 5 HOH A 149 1349 185 HOH HOH . E 5 HOH A 150 1350 170 HOH HOH . E 5 HOH A 151 1351 144 HOH HOH . E 5 HOH A 152 1352 56 HOH HOH . E 5 HOH A 153 1353 182 HOH HOH . E 5 HOH A 154 1354 172 HOH HOH . E 5 HOH A 155 1355 41 HOH HOH . E 5 HOH A 156 1356 80 HOH HOH . E 5 HOH A 157 1357 39 HOH HOH . E 5 HOH A 158 1358 149 HOH HOH . E 5 HOH A 159 1359 29 HOH HOH . E 5 HOH A 160 1360 142 HOH HOH . E 5 HOH A 161 1361 209 HOH HOH . E 5 HOH A 162 1362 98 HOH HOH . E 5 HOH A 163 1363 161 HOH HOH . E 5 HOH A 164 1364 167 HOH HOH . E 5 HOH A 165 1365 127 HOH HOH . E 5 HOH A 166 1366 223 HOH HOH . E 5 HOH A 167 1367 102 HOH HOH . E 5 HOH A 168 1368 53 HOH HOH . E 5 HOH A 169 1369 159 HOH HOH . E 5 HOH A 170 1370 85 HOH HOH . E 5 HOH A 171 1371 109 HOH HOH . E 5 HOH A 172 1372 176 HOH HOH . E 5 HOH A 173 1373 28 HOH HOH . E 5 HOH A 174 1374 211 HOH HOH . E 5 HOH A 175 1375 260 HOH HOH . E 5 HOH A 176 1376 73 HOH HOH . E 5 HOH A 177 1377 202 HOH HOH . E 5 HOH A 178 1378 249 HOH HOH . E 5 HOH A 179 1379 216 HOH HOH . E 5 HOH A 180 1380 155 HOH HOH . E 5 HOH A 181 1381 164 HOH HOH . E 5 HOH A 182 1382 82 HOH HOH . E 5 HOH A 183 1383 64 HOH HOH . E 5 HOH A 184 1384 54 HOH HOH . E 5 HOH A 185 1385 91 HOH HOH . E 5 HOH A 186 1386 111 HOH HOH . E 5 HOH A 187 1387 38 HOH HOH . E 5 HOH A 188 1388 57 HOH HOH . E 5 HOH A 189 1389 203 HOH HOH . E 5 HOH A 190 1390 114 HOH HOH . E 5 HOH A 191 1391 108 HOH HOH . E 5 HOH A 192 1392 254 HOH HOH . E 5 HOH A 193 1393 133 HOH HOH . E 5 HOH A 194 1394 118 HOH HOH . E 5 HOH A 195 1395 129 HOH HOH . E 5 HOH A 196 1396 252 HOH HOH . E 5 HOH A 197 1397 224 HOH HOH . E 5 HOH A 198 1398 113 HOH HOH . E 5 HOH A 199 1399 241 HOH HOH . E 5 HOH A 200 1400 238 HOH HOH . E 5 HOH A 201 1401 99 HOH HOH . E 5 HOH A 202 1402 93 HOH HOH . E 5 HOH A 203 1403 2 HOH HOH . E 5 HOH A 204 1404 63 HOH HOH . E 5 HOH A 205 1405 69 HOH HOH . E 5 HOH A 206 1406 234 HOH HOH . E 5 HOH A 207 1407 79 HOH HOH . E 5 HOH A 208 1408 227 HOH HOH . E 5 HOH A 209 1409 128 HOH HOH . E 5 HOH A 210 1410 258 HOH HOH . E 5 HOH A 211 1411 236 HOH HOH . E 5 HOH A 212 1412 120 HOH HOH . E 5 HOH A 213 1413 5 HOH HOH . E 5 HOH A 214 1414 219 HOH HOH . E 5 HOH A 215 1415 112 HOH HOH . E 5 HOH A 216 1416 232 HOH HOH . E 5 HOH A 217 1417 74 HOH HOH . E 5 HOH A 218 1418 124 HOH HOH . E 5 HOH A 219 1419 244 HOH HOH . E 5 HOH A 220 1420 261 HOH HOH . E 5 HOH A 221 1421 40 HOH HOH . E 5 HOH A 222 1422 51 HOH HOH . E 5 HOH A 223 1423 214 HOH HOH . E 5 HOH A 224 1424 247 HOH HOH . E 5 HOH A 225 1425 259 HOH HOH . E 5 HOH A 226 1426 66 HOH HOH . E 5 HOH A 227 1427 221 HOH HOH . E 5 HOH A 228 1428 253 HOH HOH . E 5 HOH A 229 1429 256 HOH HOH . E 5 HOH A 230 1430 231 HOH HOH . E 5 HOH A 231 1431 228 HOH HOH . E 5 HOH A 232 1432 48 HOH HOH . E 5 HOH A 233 1433 213 HOH HOH . E 5 HOH A 234 1434 217 HOH HOH . E 5 HOH A 235 1435 255 HOH HOH . E 5 HOH A 236 1436 246 HOH HOH . E 5 HOH A 237 1437 222 HOH HOH . F 5 HOH B 1 701 19 HOH HOH . F 5 HOH B 2 702 76 HOH HOH . F 5 HOH B 3 703 18 HOH HOH . F 5 HOH B 4 704 148 HOH HOH . F 5 HOH B 5 705 21 HOH HOH . F 5 HOH B 6 706 200 HOH HOH . F 5 HOH B 7 707 139 HOH HOH . F 5 HOH B 8 708 157 HOH HOH . F 5 HOH B 9 709 165 HOH HOH . F 5 HOH B 10 710 77 HOH HOH . F 5 HOH B 11 711 188 HOH HOH . F 5 HOH B 12 712 174 HOH HOH . F 5 HOH B 13 713 134 HOH HOH . F 5 HOH B 14 714 160 HOH HOH . F 5 HOH B 15 715 20 HOH HOH . F 5 HOH B 16 716 154 HOH HOH . F 5 HOH B 17 717 137 HOH HOH . F 5 HOH B 18 718 135 HOH HOH . F 5 HOH B 19 719 24 HOH HOH . F 5 HOH B 20 720 78 HOH HOH . F 5 HOH B 21 721 201 HOH HOH . F 5 HOH B 22 722 225 HOH HOH . F 5 HOH B 23 723 195 HOH HOH . F 5 HOH B 24 724 26 HOH HOH . F 5 HOH B 25 725 233 HOH HOH . F 5 HOH B 26 726 22 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 6.472 -24.747 21.85 1 68.86 ? C1 GOL 1101 A 1 HETATM 2 O O1 GOL . . . C 3 6.104 -25.505 22.997 1 70.13 ? O1 GOL 1101 A 1 HETATM 3 C C2 GOL . . . C 3 5.476 -24.917 20.722 1 67.76 ? C2 GOL 1101 A 1 HETATM 4 O O2 GOL . . . C 3 4.289 -24.154 20.968 1 65.64 ? O2 GOL 1101 A 1 HETATM 5 C C3 GOL . . . C 3 6.095 -24.522 19.401 1 69.04 ? C3 GOL 1101 A 1 HETATM 6 O O3 GOL . . . C 3 5.132 -24.025 18.48 1 67.99 ? O3 GOL 1101 A 1 HETATM 7 H H11 GOL . . . C 3 6.586 -23.698 22.121 1 68.83 ? H11 GOL 1101 A 1 HETATM 8 H H12 GOL . . . C 3 7.459 -25.065 21.517 1 68.85 ? H12 GOL 1101 A 1 HETATM 9 H HO1 GOL . . . C 3 5.941 -26.438 22.698 1 70.05 ? HO1 GOL 1101 A 1 HETATM 10 H H2 GOL . . . C 3 5.079 -25.927 20.671 1 67.89 ? H2 GOL 1101 A 1 HETATM 11 H HO2 GOL . . . C 3 4.302 -23.828 21.905 1 65.68 ? HO2 GOL 1101 A 1 HETATM 12 H H31 GOL . . . C 3 6.887 -23.79 19.542 1 69.2 ? H31 GOL 1101 A 1 HETATM 13 H H32 GOL . . . C 3 6.578 -25.398 18.971 1 69.11 ? H32 GOL 1101 A 1 HETATM 14 H HO3 GOL . . . C 3 5.604 -23.904 17.615 1 67.79 ? HO3 GOL 1101 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #