data_5FI8 # _model_server_result.job_id wNVLjeU1lz3DKhlfi9d0Qw _model_server_result.datetime_utc '2024-11-05 15:33:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5fi8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1002}' # _entry.id 5FI8 # _exptl.entry_id 5FI8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5FI8 _cell.length_a 86.147 _cell.length_b 86.147 _cell.length_c 139.053 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5FI8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 172 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 130 n n N1 C10 FMN doub 131 n n C2 O2 FMN doub 132 n n C2 N3 FMN sing 133 n n N3 C4 FMN sing 134 n n N3 HN3 FMN sing 135 n n C4 O4 FMN doub 136 n n C4 C4A FMN sing 137 n n C4A N5 FMN doub 138 n n C4A C10 FMN sing 139 n n N5 C5A FMN sing 140 n n C5A C6 FMN doub 141 n y C5A C9A FMN sing 142 n y C6 C7 FMN sing 143 n y C6 H6 FMN sing 144 n n C7 C7M FMN sing 145 n n C7 C8 FMN doub 146 n y C7M HM71 FMN sing 147 n n C7M HM72 FMN sing 148 n n C7M HM73 FMN sing 149 n n C8 C8M FMN sing 150 n n C8 C9 FMN sing 151 n y C8M HM81 FMN sing 152 n n C8M HM82 FMN sing 153 n n C8M HM83 FMN sing 154 n n C9 C9A FMN doub 155 n y C9 H9 FMN sing 156 n n C9A N10 FMN sing 157 n n N10 C10 FMN sing 158 n n N10 C1' FMN sing 159 n n C1' C2' FMN sing 160 n n C1' "H1'1" FMN sing 161 n n C1' "H1'2" FMN sing 162 n n C2' O2' FMN sing 163 n n C2' C3' FMN sing 164 n n C2' H2' FMN sing 165 n n O2' HO2' FMN sing 166 n n C3' O3' FMN sing 167 n n C3' C4' FMN sing 168 n n C3' H3' FMN sing 169 n n O3' HO3' FMN sing 170 n n C4' O4' FMN sing 171 n n C4' C5' FMN sing 172 n n C4' H4' FMN sing 173 n n O4' HO4' FMN sing 174 n n C5' O5' FMN sing 175 n n C5' "H5'1" FMN sing 176 n n C5' "H5'2" FMN sing 177 n n O5' P FMN sing 178 n n P O1P FMN doub 179 n n P O2P FMN sing 180 n n P O3P FMN sing 181 n n O2P HOP2 FMN sing 182 n n O3P HOP3 FMN sing 183 n n # _atom_sites.entry_id 5FI8 _atom_sites.fract_transf_matrix[1][1] 0.011608 _atom_sites.fract_transf_matrix[1][2] 0.006702 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013404 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007192 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5Y5 A 1 1001 1001 5Y5 D22 . C 3 FMN A 1 1002 1002 FMN FMN . D 4 ORO A 1 1003 1003 ORO ORO . E 5 LDA A 1 1004 2001 LDA LDA . F 6 HOH A 1 1101 62 HOH HOH . F 6 HOH A 2 1102 47 HOH HOH . F 6 HOH A 3 1103 40 HOH HOH . F 6 HOH A 4 1104 3 HOH HOH . F 6 HOH A 5 1105 35 HOH HOH . F 6 HOH A 6 1106 1 HOH HOH . F 6 HOH A 7 1107 44 HOH HOH . F 6 HOH A 8 1108 17 HOH HOH . F 6 HOH A 9 1109 24 HOH HOH . F 6 HOH A 10 1110 37 HOH HOH . F 6 HOH A 11 1111 13 HOH HOH . F 6 HOH A 12 1112 28 HOH HOH . F 6 HOH A 13 1113 20 HOH HOH . F 6 HOH A 14 1114 9 HOH HOH . F 6 HOH A 15 1115 50 HOH HOH . F 6 HOH A 16 1116 73 HOH HOH . F 6 HOH A 17 1117 2 HOH HOH . F 6 HOH A 18 1118 5 HOH HOH . F 6 HOH A 19 1119 7 HOH HOH . F 6 HOH A 20 1120 4 HOH HOH . F 6 HOH A 21 1121 58 HOH HOH . F 6 HOH A 22 1122 51 HOH HOH . F 6 HOH A 23 1123 54 HOH HOH . F 6 HOH A 24 1124 53 HOH HOH . F 6 HOH A 25 1125 75 HOH HOH . F 6 HOH A 26 1126 34 HOH HOH . F 6 HOH A 27 1127 52 HOH HOH . F 6 HOH A 28 1128 36 HOH HOH . F 6 HOH A 29 1129 10 HOH HOH . F 6 HOH A 30 1130 8 HOH HOH . F 6 HOH A 31 1131 11 HOH HOH . F 6 HOH A 32 1132 22 HOH HOH . F 6 HOH A 33 1133 25 HOH HOH . F 6 HOH A 34 1134 38 HOH HOH . F 6 HOH A 35 1135 16 HOH HOH . F 6 HOH A 36 1136 19 HOH HOH . F 6 HOH A 37 1137 12 HOH HOH . F 6 HOH A 38 1138 23 HOH HOH . F 6 HOH A 39 1139 60 HOH HOH . F 6 HOH A 40 1140 67 HOH HOH . F 6 HOH A 41 1141 42 HOH HOH . F 6 HOH A 42 1142 26 HOH HOH . F 6 HOH A 43 1143 21 HOH HOH . F 6 HOH A 44 1144 15 HOH HOH . F 6 HOH A 45 1145 64 HOH HOH . F 6 HOH A 46 1146 29 HOH HOH . F 6 HOH A 47 1147 27 HOH HOH . F 6 HOH A 48 1148 74 HOH HOH . F 6 HOH A 49 1149 45 HOH HOH . F 6 HOH A 50 1150 72 HOH HOH . F 6 HOH A 51 1151 41 HOH HOH . F 6 HOH A 52 1152 18 HOH HOH . F 6 HOH A 53 1153 59 HOH HOH . F 6 HOH A 54 1154 46 HOH HOH . F 6 HOH A 55 1155 30 HOH HOH . F 6 HOH A 56 1156 33 HOH HOH . F 6 HOH A 57 1157 76 HOH HOH . F 6 HOH A 58 1158 6 HOH HOH . F 6 HOH A 59 1159 39 HOH HOH . F 6 HOH A 60 1160 32 HOH HOH . F 6 HOH A 61 1161 31 HOH HOH . F 6 HOH A 62 1162 56 HOH HOH . F 6 HOH A 63 1163 65 HOH HOH . F 6 HOH A 64 1164 66 HOH HOH . F 6 HOH A 65 1165 43 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . C 3 -46.022 95.984 -3.924 1 17.81 ? N1 FMN 1002 A 1 HETATM 2 C C2 FMN . . . C 3 -45.493 95 -3.126 1 15.89 ? C2 FMN 1002 A 1 HETATM 3 O O2 FMN . . . C 3 -45.732 95.012 -1.919 1 17.78 ? O2 FMN 1002 A 1 HETATM 4 N N3 FMN . . . C 3 -44.705 94.014 -3.684 1 23.98 ? N3 FMN 1002 A 1 HETATM 5 C C4 FMN . . . C 3 -44.446 94.014 -5.041 1 23.74 ? C4 FMN 1002 A 1 HETATM 6 O O4 FMN . . . C 3 -43.736 93.128 -5.526 1 21.5 ? O4 FMN 1002 A 1 HETATM 7 C C4A FMN . . . C 3 -44.987 95.017 -5.845 1 18.06 ? C4A FMN 1002 A 1 HETATM 8 N N5 FMN . . . C 3 -44.753 95.047 -7.205 1 25.51 ? N5 FMN 1002 A 1 HETATM 9 C C5A FMN . . . C 3 -45.288 96.053 -7.986 1 20.31 ? C5A FMN 1002 A 1 HETATM 10 C C6 FMN . . . C 3 -45.034 96.072 -9.353 1 29.28 ? C6 FMN 1002 A 1 HETATM 11 C C7 FMN . . . C 3 -45.561 97.071 -10.162 1 22.78 ? C7 FMN 1002 A 1 HETATM 12 C C7M FMN . . . C 3 -45.254 97.036 -11.639 1 21.68 ? C7M FMN 1002 A 1 HETATM 13 C C8 FMN . . . C 3 -46.354 98.058 -9.582 1 25.78 ? C8 FMN 1002 A 1 HETATM 14 C C8M FMN . . . C 3 -46.954 99.168 -10.388 1 26.02 ? C8M FMN 1002 A 1 HETATM 15 C C9 FMN . . . C 3 -46.606 98.041 -8.218 1 22.8 ? C9 FMN 1002 A 1 HETATM 16 C C9A FMN . . . C 3 -46.076 97.04 -7.41 1 31.09 ? C9A FMN 1002 A 1 HETATM 17 N N10 FMN . . . C 3 -46.325 97.01 -6.047 1 23.58 ? N10 FMN 1002 A 1 HETATM 18 C C10 FMN . . . C 3 -45.776 96.005 -5.275 1 20.68 ? C10 FMN 1002 A 1 HETATM 19 C C1' FMN . . . C 3 -47.172 98.062 -5.384 1 25.88 ? C1' FMN 1002 A 1 HETATM 20 C C2' FMN . . . C 3 -46.287 99.254 -5.053 1 24.8 ? C2' FMN 1002 A 1 HETATM 21 O O2' FMN . . . C 3 -45.305 98.823 -4.139 1 20.61 ? O2' FMN 1002 A 1 HETATM 22 C C3' FMN . . . C 3 -47.068 100.42 -4.452 1 21.45 ? C3' FMN 1002 A 1 HETATM 23 O O3' FMN . . . C 3 -47.641 100.014 -3.229 1 32.69 ? O3' FMN 1002 A 1 HETATM 24 C C4' FMN . . . C 3 -48.161 100.914 -5.398 1 19.04 ? C4' FMN 1002 A 1 HETATM 25 O O4' FMN . . . C 3 -47.647 100.993 -6.711 1 23.17 ? O4' FMN 1002 A 1 HETATM 26 C C5' FMN . . . C 3 -48.717 102.285 -5.022 1 21.86 ? C5' FMN 1002 A 1 HETATM 27 O O5' FMN . . . C 3 -47.708 103.265 -5.134 1 34.73 ? O5' FMN 1002 A 1 HETATM 28 P P FMN . . . C 3 -47.76 104.409 -6.264 1 33.33 ? P FMN 1002 A 1 HETATM 29 O O1P FMN . . . C 3 -47.329 103.795 -7.573 1 23.58 ? O1P FMN 1002 A 1 HETATM 30 O O2P FMN . . . C 3 -46.822 105.532 -5.889 1 31.78 ? O2P FMN 1002 A 1 HETATM 31 O O3P FMN . . . C 3 -49.168 104.927 -6.419 1 22.81 ? O3P FMN 1002 A 1 HETATM 32 H HN3 FMN . . . C 3 -44.305 93.267 -3.081 1 28.77 ? HN3 FMN 1002 A 1 HETATM 33 H H6 FMN . . . C 3 -44.413 95.293 -9.796 1 35.14 ? H6 FMN 1002 A 1 HETATM 34 H HM71 FMN . . . C 3 -45.741 97.878 -12.131 1 26.02 ? HM71 FMN 1002 A 1 HETATM 35 H HM72 FMN . . . C 3 -45.622 96.103 -12.065 1 26.02 ? HM72 FMN 1002 A 1 HETATM 36 H HM73 FMN . . . C 3 -44.176 97.103 -11.787 1 26.02 ? HM73 FMN 1002 A 1 HETATM 37 H HM81 FMN . . . C 3 -47.527 99.825 -9.733 1 31.23 ? HM81 FMN 1002 A 1 HETATM 38 H HM82 FMN . . . C 3 -47.612 98.75 -11.149 1 31.23 ? HM82 FMN 1002 A 1 HETATM 39 H HM83 FMN . . . C 3 -46.159 99.738 -10.869 1 31.23 ? HM83 FMN 1002 A 1 HETATM 40 H H9 FMN . . . C 3 -47.225 98.82 -7.774 1 27.36 ? H9 FMN 1002 A 1 HETATM 41 H "H1'1" FMN . . . C 3 -47.615 97.663 -4.472 1 31.06 ? "H1'1" FMN 1002 A 1 HETATM 42 H "H1'2" FMN . . . C 3 -47.976 98.369 -6.052 1 31.06 ? "H1'2" FMN 1002 A 1 HETATM 43 H H2' FMN . . . C 3 -45.808 99.595 -5.971 1 29.76 ? H2' FMN 1002 A 1 HETATM 44 H HO2' FMN . . . C 3 -45.35 99.371 -3.328 1 24.74 ? HO2' FMN 1002 A 1 HETATM 45 H H3' FMN . . . C 3 -46.373 101.241 -4.272 1 25.74 ? H3' FMN 1002 A 1 HETATM 46 H H4' FMN . . . C 3 -48.981 100.196 -5.374 1 22.85 ? H4' FMN 1002 A 1 HETATM 47 H HO4' FMN . . . C 3 -47.771 101.902 -7.056 1 27.8 ? HO4' FMN 1002 A 1 HETATM 48 H "H5'1" FMN . . . C 3 -49.091 102.261 -3.999 1 26.23 ? "H5'1" FMN 1002 A 1 HETATM 49 H "H5'2" FMN . . . C 3 -49.548 102.537 -5.681 1 26.23 ? "H5'2" FMN 1002 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 345 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 49 #