data_5FI8 # _model_server_result.job_id AN3QZoC-nm6tLKng8gQUqA _model_server_result.datetime_utc '2024-11-05 15:24:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5fi8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1003}' # _entry.id 5FI8 # _exptl.entry_id 5FI8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 156.096 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'OROTIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5FI8 _cell.length_a 86.147 _cell.length_b 86.147 _cell.length_c 139.053 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5FI8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 172 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C5 H4 N2 O4' _chem_comp.formula_weight 156.096 _chem_comp.id ORO _chem_comp.mon_nstd_flag . _chem_comp.name 'OROTIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 ORO sing 384 n y N1 C6 ORO sing 385 n y N1 HN1 ORO sing 386 n n C2 O2 ORO doub 387 n n C2 N3 ORO sing 388 n y N3 C4 ORO sing 389 n y N3 HN3 ORO sing 390 n n C4 O4 ORO doub 391 n n C4 C5 ORO sing 392 n y C5 C6 ORO doub 393 n y C5 H5 ORO sing 394 n n C6 C7 ORO sing 395 n n C7 O71 ORO doub 396 n n C7 O72 ORO sing 397 n n O72 HO7 ORO sing 398 n n # _atom_sites.entry_id 5FI8 _atom_sites.fract_transf_matrix[1][1] 0.011608 _atom_sites.fract_transf_matrix[1][2] 0.006702 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013404 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007192 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5Y5 A 1 1001 1001 5Y5 D22 . C 3 FMN A 1 1002 1002 FMN FMN . D 4 ORO A 1 1003 1003 ORO ORO . E 5 LDA A 1 1004 2001 LDA LDA . F 6 HOH A 1 1101 62 HOH HOH . F 6 HOH A 2 1102 47 HOH HOH . F 6 HOH A 3 1103 40 HOH HOH . F 6 HOH A 4 1104 3 HOH HOH . F 6 HOH A 5 1105 35 HOH HOH . F 6 HOH A 6 1106 1 HOH HOH . F 6 HOH A 7 1107 44 HOH HOH . F 6 HOH A 8 1108 17 HOH HOH . F 6 HOH A 9 1109 24 HOH HOH . F 6 HOH A 10 1110 37 HOH HOH . F 6 HOH A 11 1111 13 HOH HOH . F 6 HOH A 12 1112 28 HOH HOH . F 6 HOH A 13 1113 20 HOH HOH . F 6 HOH A 14 1114 9 HOH HOH . F 6 HOH A 15 1115 50 HOH HOH . F 6 HOH A 16 1116 73 HOH HOH . F 6 HOH A 17 1117 2 HOH HOH . F 6 HOH A 18 1118 5 HOH HOH . F 6 HOH A 19 1119 7 HOH HOH . F 6 HOH A 20 1120 4 HOH HOH . F 6 HOH A 21 1121 58 HOH HOH . F 6 HOH A 22 1122 51 HOH HOH . F 6 HOH A 23 1123 54 HOH HOH . F 6 HOH A 24 1124 53 HOH HOH . F 6 HOH A 25 1125 75 HOH HOH . F 6 HOH A 26 1126 34 HOH HOH . F 6 HOH A 27 1127 52 HOH HOH . F 6 HOH A 28 1128 36 HOH HOH . F 6 HOH A 29 1129 10 HOH HOH . F 6 HOH A 30 1130 8 HOH HOH . F 6 HOH A 31 1131 11 HOH HOH . F 6 HOH A 32 1132 22 HOH HOH . F 6 HOH A 33 1133 25 HOH HOH . F 6 HOH A 34 1134 38 HOH HOH . F 6 HOH A 35 1135 16 HOH HOH . F 6 HOH A 36 1136 19 HOH HOH . F 6 HOH A 37 1137 12 HOH HOH . F 6 HOH A 38 1138 23 HOH HOH . F 6 HOH A 39 1139 60 HOH HOH . F 6 HOH A 40 1140 67 HOH HOH . F 6 HOH A 41 1141 42 HOH HOH . F 6 HOH A 42 1142 26 HOH HOH . F 6 HOH A 43 1143 21 HOH HOH . F 6 HOH A 44 1144 15 HOH HOH . F 6 HOH A 45 1145 64 HOH HOH . F 6 HOH A 46 1146 29 HOH HOH . F 6 HOH A 47 1147 27 HOH HOH . F 6 HOH A 48 1148 74 HOH HOH . F 6 HOH A 49 1149 45 HOH HOH . F 6 HOH A 50 1150 72 HOH HOH . F 6 HOH A 51 1151 41 HOH HOH . F 6 HOH A 52 1152 18 HOH HOH . F 6 HOH A 53 1153 59 HOH HOH . F 6 HOH A 54 1154 46 HOH HOH . F 6 HOH A 55 1155 30 HOH HOH . F 6 HOH A 56 1156 33 HOH HOH . F 6 HOH A 57 1157 76 HOH HOH . F 6 HOH A 58 1158 6 HOH HOH . F 6 HOH A 59 1159 39 HOH HOH . F 6 HOH A 60 1160 32 HOH HOH . F 6 HOH A 61 1161 31 HOH HOH . F 6 HOH A 62 1162 56 HOH HOH . F 6 HOH A 63 1163 65 HOH HOH . F 6 HOH A 64 1164 66 HOH HOH . F 6 HOH A 65 1165 43 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 ORO . . . D 4 -48.4 93.716 -7.983 1 28.37 ? N1 ORO 1003 A 1 HETATM 2 C C2 ORO . . . D 4 -48.958 94.63 -7.109 1 34.05 ? C2 ORO 1003 A 1 HETATM 3 O O2 ORO . . . D 4 -49.604 95.55 -7.536 1 33.08 ? O2 ORO 1003 A 1 HETATM 4 N N3 ORO . . . D 4 -48.777 94.49 -5.788 1 21.92 ? N3 ORO 1003 A 1 HETATM 5 C C4 ORO . . . D 4 -48.044 93.45 -5.311 1 30.07 ? C4 ORO 1003 A 1 HETATM 6 O O4 ORO . . . D 4 -47.881 93.326 -4.132 1 24.8 ? O4 ORO 1003 A 1 HETATM 7 C C5 ORO . . . D 4 -47.493 92.548 -6.18 1 22.56 ? C5 ORO 1003 A 1 HETATM 8 C C6 ORO . . . D 4 -47.682 92.694 -7.519 1 23.65 ? C6 ORO 1003 A 1 HETATM 9 C C7 ORO . . . D 4 -47.083 91.696 -8.493 1 27.28 ? C7 ORO 1003 A 1 HETATM 10 O O71 ORO . . . D 4 -47.765 91.318 -9.463 1 33.08 ? O71 ORO 1003 A 1 HETATM 11 O O72 ORO . . . D 4 -45.883 91.238 -8.324 1 33.83 ? O72 ORO 1003 A 1 HETATM 12 H HN1 ORO . . . D 4 -48.519 93.804 -8.832 1 34.04 ? HN1 ORO 1003 A 1 HETATM 13 H HN3 ORO . . . D 4 -49.154 95.115 -5.192 1 26.3 ? HN3 ORO 1003 A 1 HETATM 14 H H5 ORO . . . D 4 -46.942 91.76 -5.823 1 27.07 ? H5 ORO 1003 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #