data_5FJV # _model_server_result.job_id ZxY1uw6-OvOf7oKg4UkXdg _model_server_result.datetime_utc '2024-11-26 11:12:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5fjv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":300}' # _entry.id 5FJV # _exptl.entry_id 5FJV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 208.687 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description EPIBATIDINE _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5FJV _cell.length_a 101.524 _cell.length_b 116.559 _cell.length_c 129.546 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5FJV _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 125 A CYS 157 1_555 A SG CYS 139 A CYS 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf2 A SG CYS 189 A CYS 221 1_555 A SG CYS 190 A CYS 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf3 B SG CYS 125 B CYS 157 1_555 B SG CYS 139 B CYS 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf4 B SG CYS 189 B CYS 221 1_555 B SG CYS 190 B CYS 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf5 C SG CYS 125 C CYS 157 1_555 C SG CYS 139 C CYS 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf6 C SG CYS 189 C CYS 221 1_555 C SG CYS 190 C CYS 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf7 D SG CYS 125 D CYS 157 1_555 D SG CYS 139 D CYS 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf8 D SG CYS 189 D CYS 221 1_555 D SG CYS 190 D CYS 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf9 E SG CYS 125 E CYS 157 1_555 E SG CYS 139 E CYS 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? # _chem_comp.formula 'C11 H13 Cl N2' _chem_comp.formula_weight 208.687 _chem_comp.id EPJ _chem_comp.mon_nstd_flag . _chem_comp.name EPIBATIDINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (2R)-2-(6-CHLOROPYRIDIN-3-YL)-7-AZABICYCLO[2.2.1]HEPTANE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 EPJ sing 83 n n C1 C6 EPJ sing 84 n n C1 C7 EPJ sing 85 n n C1 H1 EPJ sing 86 n n C2 C3 EPJ sing 87 n n C2 H2C1 EPJ sing 88 n n C2 H2C2 EPJ sing 89 n n C3 C4 EPJ sing 90 n n C3 N1 EPJ sing 91 n n C3 H3 EPJ sing 92 n n C4 C5 EPJ sing 93 n n C4 H4C1 EPJ sing 94 n n C4 H4C2 EPJ sing 95 n n C5 C6 EPJ sing 96 n n C5 H5C1 EPJ sing 97 n n C5 H5C2 EPJ sing 98 n n C6 N1 EPJ sing 99 n n C6 H6 EPJ sing 100 n n N1 HA EPJ sing 101 n n C7 C8 EPJ doub 102 n y C7 C11 EPJ sing 103 n y C8 C9 EPJ sing 104 n y C8 H8 EPJ sing 105 n n C9 C10 EPJ doub 106 n y C9 H9 EPJ sing 107 n n C10 CL EPJ sing 108 n n C10 N2 EPJ sing 109 n y N2 C11 EPJ doub 110 n y C11 H11 EPJ sing 111 n n # _atom_sites.entry_id 5FJV _atom_sites.fract_transf_matrix[1][1] 0.00985 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008579 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007719 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 EPJ A 1 300 300 EPJ EPJ . G 2 EPJ B 1 300 300 EPJ EPJ . H 2 EPJ C 1 300 300 EPJ EPJ . I 2 EPJ D 1 300 300 EPJ EPJ . J 2 EPJ E 1 300 300 EPJ EPJ . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EPJ . . . J 2 -15.932 -0.167 -5.649 1 76.1 ? C1 EPJ 300 E 1 HETATM 2 C C2 EPJ . . . J 2 -17.396 -0.336 -6.113 1 72.89 ? C2 EPJ 300 E 1 HETATM 3 C C3 EPJ . . . J 2 -17.451 -1.74 -6.651 1 75.95 ? C3 EPJ 300 E 1 HETATM 4 C C4 EPJ . . . J 2 -17.414 -2.675 -5.468 1 76.72 ? C4 EPJ 300 E 1 HETATM 5 C C5 EPJ . . . J 2 -15.97 -2.527 -4.98 1 76.37 ? C5 EPJ 300 E 1 HETATM 6 C C6 EPJ . . . J 2 -15.372 -1.535 -5.951 1 77.47 ? C6 EPJ 300 E 1 HETATM 7 N N1 EPJ . . . J 2 -16.12 -1.851 -7.11 1 84.33 ? N1 EPJ 300 E 1 HETATM 8 C C7 EPJ . . . J 2 -15.223 0.976 -6.296 1 81.28 ? C7 EPJ 300 E 1 HETATM 9 C C8 EPJ . . . J 2 -15.917 2.153 -6.547 1 85.08 ? C8 EPJ 300 E 1 HETATM 10 C C9 EPJ . . . J 2 -15.285 3.243 -7.115 1 87.86 ? C9 EPJ 300 E 1 HETATM 11 C C10 EPJ . . . J 2 -13.944 3.15 -7.43 1 90.17 ? C10 EPJ 300 E 1 HETATM 12 CL CL EPJ . . . J 2 -13.136 4.563 -8.179 1 120.98 ? CL EPJ 300 E 1 HETATM 13 N N2 EPJ . . . J 2 -13.269 2.006 -7.173 1 88.37 ? N2 EPJ 300 E 1 HETATM 14 C C11 EPJ . . . J 2 -13.866 0.947 -6.613 1 83.08 ? C11 EPJ 300 E 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #