data_5FL7
#
_model_server_result.job_id            1bjSbFKuVblf5wnRCV3vzg 
_model_server_result.datetime_utc      '2024-12-26 18:15:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5fl7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"BA","auth_seq_id":600}' 
#
_entry.id    5FL7 
#
_exptl.entry_id    5FL7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          9 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5FL7 
_cell.length_a            169.5 
_cell.length_b            182.2 
_cell.length_c            193 
_cell.Z_PDB               40 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5FL7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    nonadecameric 
_pdbx_struct_assembly.oligomeric_count      19 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 9 Z N N 
? 9 BA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 202 A THR 202 1_555 U MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
metalc ? metalc2 T O1G ATP . A ATP 600 1_555 U MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
metalc ? metalc3 T O2B ATP . A ATP 600 1_555 U MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? 
metalc ? metalc4 U MG MG . A MG 601 1_555 DA O HOH . A HOH 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
metalc ? metalc5 U MG MG . A MG 601 1_555 DA O HOH . A HOH 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? 
metalc ? metalc6 U MG MG . A MG 601 1_555 DA O HOH . A HOH 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? 
metalc ? metalc7 B OG1 THR 202 B THR 202 1_555 W MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
metalc ? metalc8 V O2G ATP . B ATP 600 1_555 W MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? 
metalc ? metalc9 V O2B ATP . B ATP 600 1_555 W MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? 
metalc ? metalc10 W MG MG . B MG 601 1_555 EA O HOH . B HOH 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? 
metalc ? metalc11 W MG MG . B MG 601 1_555 EA O HOH . B HOH 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? 
metalc ? metalc12 W MG MG . B MG 601 1_555 EA O HOH . B HOH 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? 
metalc ? metalc13 C OG1 THR 202 C THR 202 1_555 Y MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? 
metalc ? metalc14 X O1G ATP . C ATP 600 1_555 Y MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
metalc ? metalc15 X O2B ATP . C ATP 600 1_555 Y MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? 
metalc ? metalc16 Y MG MG . C MG 601 1_555 FA O HOH . C HOH 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? 
metalc ? metalc17 Y MG MG . C MG 601 1_555 FA O HOH . C HOH 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
metalc ? metalc18 Y MG MG . C MG 601 1_555 FA O HOH . C HOH 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
metalc ? metalc19 D OG1 THR 195 D THR 195 1_555 AA MG MG . D MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
metalc ? metalc20 Z O1B ADP . D ADP 600 1_555 AA MG MG . D MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
metalc ? metalc21 AA MG MG . D MG 601 1_555 GA O HOH . D HOH 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? 
metalc ? metalc22 AA MG MG . D MG 601 1_555 GA O HOH . D HOH 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? 
metalc ? metalc23 AA MG MG . D MG 601 1_555 GA O HOH . D HOH 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? 
metalc ? metalc24 AA MG MG . D MG 601 1_555 GA O HOH . D HOH 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
metalc ? metalc25 F OG1 THR 195 F THR 195 1_555 CA MG MG . F MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? 
metalc ? metalc26 BA O2B ADP . F ADP 600 1_555 CA MG MG . F MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? 
metalc ? metalc27 CA MG MG . F MG 601 1_555 HA O HOH . F HOH 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? 
metalc ? metalc28 CA MG MG . F MG 601 1_555 HA O HOH . F HOH 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? 
metalc ? metalc29 CA MG MG . F MG 601 1_555 HA O HOH . F HOH 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? 
metalc ? metalc30 CA MG MG . F MG 601 1_555 HA O HOH . F HOH 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     5FL7 
_atom_sites.fract_transf_matrix[1][1]    0.0059 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005488 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005181 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
T 7 ATP A 1 600 600 ATP ATP . 
U 8 MG A 1 601 601 MG MG . 
V 7 ATP B 1 600 600 ATP ATP . 
W 8 MG B 1 601 601 MG MG . 
X 7 ATP C 1 600 600 ATP ATP . 
Y 8 MG C 1 601 601 MG MG . 
Z 9 ADP D 1 600 600 ADP ADP . 
AA 8 MG D 1 601 601 MG MG . 
BA 9 ADP F 1 600 600 ADP ADP . 
CA 8 MG F 1 601 601 MG MG . 
DA 10 HOH A 1 2001 2001 HOH HOH . 
DA 10 HOH A 2 2002 2002 HOH HOH . 
DA 10 HOH A 3 2003 2003 HOH HOH . 
EA 10 HOH B 1 2001 2001 HOH HOH . 
EA 10 HOH B 2 2002 2002 HOH HOH . 
EA 10 HOH B 3 2003 2003 HOH HOH . 
FA 10 HOH C 1 2001 2001 HOH HOH . 
FA 10 HOH C 2 2002 2002 HOH HOH . 
FA 10 HOH C 3 2003 2003 HOH HOH . 
GA 10 HOH D 1 2001 2001 HOH HOH . 
GA 10 HOH D 2 2002 2002 HOH HOH . 
GA 10 HOH D 3 2003 2003 HOH HOH . 
GA 10 HOH D 4 2004 2004 HOH HOH . 
HA 10 HOH F 1 2001 2001 HOH HOH . 
HA 10 HOH F 2 2002 2002 HOH HOH . 
HA 10 HOH F 3 2003 2003 HOH HOH . 
HA 10 HOH F 4 2004 2004 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . BA 9 -17.103 37.828 -62.557 1 164.94 ? PB ADP 600 F 1 
HETATM 2 O O1B ADP . . . BA 9 -16.394 36.551 -62.185 1 159.11 ? O1B ADP 600 F 1 
HETATM 3 O O2B ADP . . . BA 9 -16.327 38.713 -63.502 1 182.02 -1 O2B ADP 600 F 1 
HETATM 4 O O3B ADP . . . BA 9 -18.562 37.656 -62.906 1 160.73 ? O3B ADP 600 F 1 
HETATM 5 P PA ADP . . . BA 9 -15.793 39.457 -60.689 1 178.98 ? PA ADP 600 F 1 
HETATM 6 O O1A ADP . . . BA 9 -14.641 38.497 -60.511 1 166.89 -1 O1A ADP 600 F 1 
HETATM 7 O O2A ADP . . . BA 9 -15.663 40.634 -61.626 1 176.48 ? O2A ADP 600 F 1 
HETATM 8 O O3A ADP . . . BA 9 -17.087 38.626 -61.163 1 175.13 ? O3A ADP 600 F 1 
HETATM 9 O O5' ADP . . . BA 9 -16.26 39.994 -59.244 1 171.24 ? O5' ADP 600 F 1 
HETATM 10 C C5' ADP . . . BA 9 -16.878 41.275 -59.126 1 178.68 ? C5' ADP 600 F 1 
HETATM 11 C C4' ADP . . . BA 9 -16.804 41.765 -57.686 1 175.03 ? C4' ADP 600 F 1 
HETATM 12 O O4' ADP . . . BA 9 -16.749 40.661 -56.78 1 168.4 ? O4' ADP 600 F 1 
HETATM 13 C C3' ADP . . . BA 9 -15.552 42.595 -57.46 1 182.33 ? C3' ADP 600 F 1 
HETATM 14 O O3' ADP . . . BA 9 -15.905 43.971 -57.29 1 182.76 ? O3' ADP 600 F 1 
HETATM 15 C C2' ADP . . . BA 9 -14.917 42.055 -56.196 1 182.87 ? C2' ADP 600 F 1 
HETATM 16 O O2' ADP . . . BA 9 -14.897 43.071 -55.191 1 186.92 ? O2' ADP 600 F 1 
HETATM 17 C C1' ADP . . . BA 9 -15.793 40.899 -55.744 1 175.71 ? C1' ADP 600 F 1 
HETATM 18 N N9 ADP . . . BA 9 -14.958 39.687 -55.558 1 178.57 ? N9 ADP 600 F 1 
HETATM 19 C C8 ADP . . . BA 9 -14.904 38.647 -56.408 1 178.68 ? C8 ADP 600 F 1 
HETATM 20 N N7 ADP . . . BA 9 -14.052 37.689 -55.964 1 172.07 ? N7 ADP 600 F 1 
HETATM 21 C C5 ADP . . . BA 9 -13.542 38.119 -54.797 1 178.32 ? C5 ADP 600 F 1 
HETATM 22 C C6 ADP . . . BA 9 -12.583 37.593 -53.799 1 182.41 ? C6 ADP 600 F 1 
HETATM 23 N N6 ADP . . . BA 9 -11.991 36.388 -53.973 1 180.15 ? N6 ADP 600 F 1 
HETATM 24 N N1 ADP . . . BA 9 -12.321 38.356 -52.714 1 170.84 ? N1 ADP 600 F 1 
HETATM 25 C C2 ADP . . . BA 9 -12.908 39.554 -52.535 1 172.73 ? C2 ADP 600 F 1 
HETATM 26 N N3 ADP . . . BA 9 -13.788 40.092 -53.399 1 176.19 ? N3 ADP 600 F 1 
HETATM 27 C C4 ADP . . . BA 9 -14.142 39.435 -54.53 1 183.36 ? C4 ADP 600 F 1 
#
_model_server_stats.io_time_ms              129 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    56 
_model_server_stats.query_time_ms           319 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           27 
#