data_5FL7 # _model_server_result.job_id vJDbxWmHk0sGtgyzg4RRJg _model_server_result.datetime_utc '2024-11-05 01:01:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5fl7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":600}' # _entry.id 5FL7 # _exptl.entry_id 5FL7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5FL7 _cell.length_a 169.5 _cell.length_b 182.2 _cell.length_c 193 _cell.Z_PDB 40 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5FL7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details nonadecameric _pdbx_struct_assembly.oligomeric_count 19 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 T N N ? 7 V N N ? 7 X N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 202 A THR 202 1_555 U MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc2 T O1G ATP . A ATP 600 1_555 U MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc3 T O2B ATP . A ATP 600 1_555 U MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc4 U MG MG . A MG 601 1_555 DA O HOH . A HOH 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? metalc ? metalc5 U MG MG . A MG 601 1_555 DA O HOH . A HOH 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc6 U MG MG . A MG 601 1_555 DA O HOH . A HOH 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc7 B OG1 THR 202 B THR 202 1_555 W MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc8 V O2G ATP . B ATP 600 1_555 W MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc9 V O2B ATP . B ATP 600 1_555 W MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? metalc ? metalc10 W MG MG . B MG 601 1_555 EA O HOH . B HOH 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc11 W MG MG . B MG 601 1_555 EA O HOH . B HOH 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc12 W MG MG . B MG 601 1_555 EA O HOH . B HOH 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc13 C OG1 THR 202 C THR 202 1_555 Y MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc14 X O1G ATP . C ATP 600 1_555 Y MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc15 X O2B ATP . C ATP 600 1_555 Y MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc16 Y MG MG . C MG 601 1_555 FA O HOH . C HOH 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc17 Y MG MG . C MG 601 1_555 FA O HOH . C HOH 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc18 Y MG MG . C MG 601 1_555 FA O HOH . C HOH 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc19 D OG1 THR 195 D THR 195 1_555 AA MG MG . D MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc20 Z O1B ADP . D ADP 600 1_555 AA MG MG . D MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc21 AA MG MG . D MG 601 1_555 GA O HOH . D HOH 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc22 AA MG MG . D MG 601 1_555 GA O HOH . D HOH 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? metalc ? metalc23 AA MG MG . D MG 601 1_555 GA O HOH . D HOH 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc24 AA MG MG . D MG 601 1_555 GA O HOH . D HOH 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc25 F OG1 THR 195 F THR 195 1_555 CA MG MG . F MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc26 BA O2B ADP . F ADP 600 1_555 CA MG MG . F MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc27 CA MG MG . F MG 601 1_555 HA O HOH . F HOH 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc28 CA MG MG . F MG 601 1_555 HA O HOH . F HOH 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc29 CA MG MG . F MG 601 1_555 HA O HOH . F HOH 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc30 CA MG MG . F MG 601 1_555 HA O HOH . F HOH 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 114 n n PG O2G ATP sing 115 n n PG O3G ATP sing 116 n n PG O3B ATP sing 117 n n O2G HOG2 ATP sing 118 n n O3G HOG3 ATP sing 119 n n PB O1B ATP doub 120 n n PB O2B ATP sing 121 n n PB O3B ATP sing 122 n n PB O3A ATP sing 123 n n O2B HOB2 ATP sing 124 n n PA O1A ATP doub 125 n n PA O2A ATP sing 126 n n PA O3A ATP sing 127 n n PA O5' ATP sing 128 n n O2A HOA2 ATP sing 129 n n O5' C5' ATP sing 130 n n C5' C4' ATP sing 131 n n C5' "H5'1" ATP sing 132 n n C5' "H5'2" ATP sing 133 n n C4' O4' ATP sing 134 n n C4' C3' ATP sing 135 n n C4' H4' ATP sing 136 n n O4' C1' ATP sing 137 n n C3' O3' ATP sing 138 n n C3' C2' ATP sing 139 n n C3' H3' ATP sing 140 n n O3' HO3' ATP sing 141 n n C2' O2' ATP sing 142 n n C2' C1' ATP sing 143 n n C2' H2' ATP sing 144 n n O2' HO2' ATP sing 145 n n C1' N9 ATP sing 146 n n C1' H1' ATP sing 147 n n N9 C8 ATP sing 148 n y N9 C4 ATP sing 149 n y C8 N7 ATP doub 150 n y C8 H8 ATP sing 151 n n N7 C5 ATP sing 152 n y C5 C6 ATP sing 153 n y C5 C4 ATP doub 154 n y C6 N6 ATP sing 155 n n C6 N1 ATP doub 156 n y N6 HN61 ATP sing 157 n n N6 HN62 ATP sing 158 n n N1 C2 ATP sing 159 n y C2 N3 ATP doub 160 n y C2 H2 ATP sing 161 n n N3 C4 ATP sing 162 n y # _atom_sites.entry_id 5FL7 _atom_sites.fract_transf_matrix[1][1] 0.0059 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005488 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005181 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code T 7 ATP A 1 600 600 ATP ATP . U 8 MG A 1 601 601 MG MG . V 7 ATP B 1 600 600 ATP ATP . W 8 MG B 1 601 601 MG MG . X 7 ATP C 1 600 600 ATP ATP . Y 8 MG C 1 601 601 MG MG . Z 9 ADP D 1 600 600 ADP ADP . AA 8 MG D 1 601 601 MG MG . BA 9 ADP F 1 600 600 ADP ADP . CA 8 MG F 1 601 601 MG MG . DA 10 HOH A 1 2001 2001 HOH HOH . DA 10 HOH A 2 2002 2002 HOH HOH . DA 10 HOH A 3 2003 2003 HOH HOH . EA 10 HOH B 1 2001 2001 HOH HOH . EA 10 HOH B 2 2002 2002 HOH HOH . EA 10 HOH B 3 2003 2003 HOH HOH . FA 10 HOH C 1 2001 2001 HOH HOH . FA 10 HOH C 2 2002 2002 HOH HOH . FA 10 HOH C 3 2003 2003 HOH HOH . GA 10 HOH D 1 2001 2001 HOH HOH . GA 10 HOH D 2 2002 2002 HOH HOH . GA 10 HOH D 3 2003 2003 HOH HOH . GA 10 HOH D 4 2004 2004 HOH HOH . HA 10 HOH F 1 2001 2001 HOH HOH . HA 10 HOH F 2 2002 2002 HOH HOH . HA 10 HOH F 3 2003 2003 HOH HOH . HA 10 HOH F 4 2004 2004 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . T 7 -65.801 12.699 -62.426 1 158.48 ? PG ATP 600 A 1 HETATM 2 O O1G ATP . . . T 7 -66.818 12.895 -63.525 1 157.95 ? O1G ATP 600 A 1 HETATM 3 O O2G ATP . . . T 7 -64.374 12.96 -62.844 1 197.14 ? O2G ATP 600 A 1 HETATM 4 O O3G ATP . . . T 7 -65.993 11.439 -61.616 1 151.02 ? O3G ATP 600 A 1 HETATM 5 P PB ATP . . . T 7 -67.491 14.163 -60.798 1 165.98 ? PB ATP 600 A 1 HETATM 6 O O1B ATP . . . T 7 -67.429 15.546 -60.198 1 161.32 ? O1B ATP 600 A 1 HETATM 7 O O2B ATP . . . T 7 -68.51 13.85 -61.866 1 155.68 ? O2B ATP 600 A 1 HETATM 8 O O3B ATP . . . T 7 -66.026 13.82 -61.364 1 156.04 ? O3B ATP 600 A 1 HETATM 9 P PA ATP . . . T 7 -69.116 12.429 -59.361 1 154.28 ? PA ATP 600 A 1 HETATM 10 O O1A ATP . . . T 7 -70.167 13.513 -59.359 1 150.84 ? O1A ATP 600 A 1 HETATM 11 O O2A ATP . . . T 7 -69.24 11.285 -60.339 1 153.93 ? O2A ATP 600 A 1 HETATM 12 O O3A ATP . . . T 7 -67.682 13.126 -59.582 1 165.17 ? O3A ATP 600 A 1 HETATM 13 O O5' ATP . . . T 7 -69.012 11.825 -57.874 1 168.73 ? O5' ATP 600 A 1 HETATM 14 C C5' ATP . . . T 7 -68.012 10.866 -57.534 1 169.12 ? C5' ATP 600 A 1 HETATM 15 C C4' ATP . . . T 7 -68.569 9.993 -56.419 1 155.96 ? C4' ATP 600 A 1 HETATM 16 O O4' ATP . . . T 7 -68.874 10.798 -55.279 1 156.38 ? O4' ATP 600 A 1 HETATM 17 C C3' ATP . . . T 7 -69.859 9.322 -56.862 1 153.86 ? C3' ATP 600 A 1 HETATM 18 O O3' ATP . . . T 7 -69.695 7.901 -56.84 1 146.38 ? O3' ATP 600 A 1 HETATM 19 C C2' ATP . . . T 7 -70.918 9.737 -55.861 1 153.09 ? C2' ATP 600 A 1 HETATM 20 O O2' ATP . . . T 7 -71.554 8.58 -55.312 1 159.23 ? O2' ATP 600 A 1 HETATM 21 C C1' ATP . . . T 7 -70.178 10.5 -54.775 1 164.09 ? C1' ATP 600 A 1 HETATM 22 N N9 ATP . . . T 7 -70.889 11.764 -54.46 1 172.8 ? N9 ATP 600 A 1 HETATM 23 C C8 ATP . . . T 7 -70.794 12.909 -55.161 1 160.3 ? C8 ATP 600 A 1 HETATM 24 N N7 ATP . . . T 7 -71.566 13.883 -54.616 1 160.79 ? N7 ATP 600 A 1 HETATM 25 C C5 ATP . . . T 7 -72.176 13.358 -53.538 1 163.94 ? C5 ATP 600 A 1 HETATM 26 C C6 ATP . . . T 7 -73.127 13.841 -52.509 1 164.09 ? C6 ATP 600 A 1 HETATM 27 N N6 ATP . . . T 7 -73.59 15.114 -52.528 1 161.14 ? N6 ATP 600 A 1 HETATM 28 N N1 ATP . . . T 7 -73.515 12.969 -51.552 1 175.37 ? N1 ATP 600 A 1 HETATM 29 C C2 ATP . . . T 7 -73.062 11.701 -51.523 1 170.52 ? C2 ATP 600 A 1 HETATM 30 N N3 ATP . . . T 7 -72.199 11.196 -52.423 1 166.1 ? N3 ATP 600 A 1 HETATM 31 C C4 ATP . . . T 7 -71.727 11.96 -53.438 1 164.99 ? C4 ATP 600 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #