data_5FL7 # _model_server_result.job_id am8DNtm9Czn6x13X92KQ5A _model_server_result.datetime_utc '2024-11-05 00:55:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5fl7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Z","auth_seq_id":600}' # _entry.id 5FL7 # _exptl.entry_id 5FL7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5FL7 _cell.length_a 169.5 _cell.length_b 182.2 _cell.length_c 193 _cell.Z_PDB 40 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5FL7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details nonadecameric _pdbx_struct_assembly.oligomeric_count 19 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 9 Z N N ? 9 BA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 202 A THR 202 1_555 U MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc2 T O1G ATP . A ATP 600 1_555 U MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc3 T O2B ATP . A ATP 600 1_555 U MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc4 U MG MG . A MG 601 1_555 DA O HOH . A HOH 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? metalc ? metalc5 U MG MG . A MG 601 1_555 DA O HOH . A HOH 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc6 U MG MG . A MG 601 1_555 DA O HOH . A HOH 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc7 B OG1 THR 202 B THR 202 1_555 W MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc8 V O2G ATP . B ATP 600 1_555 W MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc9 V O2B ATP . B ATP 600 1_555 W MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? metalc ? metalc10 W MG MG . B MG 601 1_555 EA O HOH . B HOH 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc11 W MG MG . B MG 601 1_555 EA O HOH . B HOH 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc12 W MG MG . B MG 601 1_555 EA O HOH . B HOH 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc13 C OG1 THR 202 C THR 202 1_555 Y MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc14 X O1G ATP . C ATP 600 1_555 Y MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc15 X O2B ATP . C ATP 600 1_555 Y MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc16 Y MG MG . C MG 601 1_555 FA O HOH . C HOH 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc17 Y MG MG . C MG 601 1_555 FA O HOH . C HOH 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc18 Y MG MG . C MG 601 1_555 FA O HOH . C HOH 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? metalc ? metalc19 D OG1 THR 195 D THR 195 1_555 AA MG MG . D MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc20 Z O1B ADP . D ADP 600 1_555 AA MG MG . D MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc21 AA MG MG . D MG 601 1_555 GA O HOH . D HOH 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc22 AA MG MG . D MG 601 1_555 GA O HOH . D HOH 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? metalc ? metalc23 AA MG MG . D MG 601 1_555 GA O HOH . D HOH 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc24 AA MG MG . D MG 601 1_555 GA O HOH . D HOH 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? metalc ? metalc25 F OG1 THR 195 F THR 195 1_555 CA MG MG . F MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc26 BA O2B ADP . F ADP 600 1_555 CA MG MG . F MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc27 CA MG MG . F MG 601 1_555 HA O HOH . F HOH 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc28 CA MG MG . F MG 601 1_555 HA O HOH . F HOH 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc29 CA MG MG . F MG 601 1_555 HA O HOH . F HOH 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc30 CA MG MG . F MG 601 1_555 HA O HOH . F HOH 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 5FL7 _atom_sites.fract_transf_matrix[1][1] 0.0059 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005488 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005181 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code T 7 ATP A 1 600 600 ATP ATP . U 8 MG A 1 601 601 MG MG . V 7 ATP B 1 600 600 ATP ATP . W 8 MG B 1 601 601 MG MG . X 7 ATP C 1 600 600 ATP ATP . Y 8 MG C 1 601 601 MG MG . Z 9 ADP D 1 600 600 ADP ADP . AA 8 MG D 1 601 601 MG MG . BA 9 ADP F 1 600 600 ADP ADP . CA 8 MG F 1 601 601 MG MG . DA 10 HOH A 1 2001 2001 HOH HOH . DA 10 HOH A 2 2002 2002 HOH HOH . DA 10 HOH A 3 2003 2003 HOH HOH . EA 10 HOH B 1 2001 2001 HOH HOH . EA 10 HOH B 2 2002 2002 HOH HOH . EA 10 HOH B 3 2003 2003 HOH HOH . FA 10 HOH C 1 2001 2001 HOH HOH . FA 10 HOH C 2 2002 2002 HOH HOH . FA 10 HOH C 3 2003 2003 HOH HOH . GA 10 HOH D 1 2001 2001 HOH HOH . GA 10 HOH D 2 2002 2002 HOH HOH . GA 10 HOH D 3 2003 2003 HOH HOH . GA 10 HOH D 4 2004 2004 HOH HOH . HA 10 HOH F 1 2001 2001 HOH HOH . HA 10 HOH F 2 2002 2002 HOH HOH . HA 10 HOH F 3 2003 2003 HOH HOH . HA 10 HOH F 4 2004 2004 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . Z 9 -44.686 -1.378 -61.054 1 169.65 ? PB ADP 600 D 1 HETATM 2 O O1B ADP . . . Z 9 -45.027 -2.619 -61.843 1 161.11 ? O1B ADP 600 D 1 HETATM 3 O O2B ADP . . . Z 9 -45.826 -0.405 -60.883 1 164.97 ? O2B ADP 600 D 1 HETATM 4 O O3B ADP . . . Z 9 -43.378 -0.729 -61.438 1 161.13 ? O3B ADP 600 D 1 HETATM 5 P PA ADP . . . Z 9 -43.881 -3.396 -59.277 1 164.4 ? PA ADP 600 D 1 HETATM 6 O O1A ADP . . . Z 9 -45.05 -4.348 -59.191 1 173.49 ? O1A ADP 600 D 1 HETATM 7 O O2A ADP . . . Z 9 -42.749 -3.647 -60.244 1 161.78 ? O2A ADP 600 D 1 HETATM 8 O O3A ADP . . . Z 9 -44.448 -1.917 -59.557 1 169.43 ? O3A ADP 600 D 1 HETATM 9 O O5' ADP . . . Z 9 -43.25 -3.201 -57.81 1 162.15 ? O5' ADP 600 D 1 HETATM 10 C C5' ADP . . . Z 9 -41.901 -2.757 -57.677 1 162.41 ? C5' ADP 600 D 1 HETATM 11 C C4' ADP . . . Z 9 -41.383 -3.092 -56.286 1 161.07 ? C4' ADP 600 D 1 HETATM 12 O O4' ADP . . . Z 9 -42.429 -2.951 -55.322 1 164.98 ? O4' ADP 600 D 1 HETATM 13 C C3' ADP . . . Z 9 -40.905 -4.531 -56.219 1 161.49 ? C3' ADP 600 D 1 HETATM 14 O O3' ADP . . . Z 9 -39.476 -4.575 -56.164 1 159.56 ? O3' ADP 600 D 1 HETATM 15 C C2' ADP . . . Z 9 -41.496 -5.103 -54.948 1 164.07 ? C2' ADP 600 D 1 HETATM 16 O O2' ADP . . . Z 9 -40.449 -5.423 -54.027 1 165.11 ? O2' ADP 600 D 1 HETATM 17 C C1' ADP . . . Z 9 -42.382 -4.013 -54.367 1 166.85 ? C1' ADP 600 D 1 HETATM 18 N N9 ADP . . . Z 9 -43.744 -4.56 -54.151 1 166.51 ? N9 ADP 600 D 1 HETATM 19 C C8 ADP . . . Z 9 -44.789 -4.409 -54.984 1 171.79 ? C8 ADP 600 D 1 HETATM 20 N N7 ADP . . . Z 9 -45.895 -5.03 -54.501 1 170.72 ? N7 ADP 600 D 1 HETATM 21 C C5 ADP . . . Z 9 -45.559 -5.596 -53.329 1 163.13 ? C5 ADP 600 D 1 HETATM 22 C C6 ADP . . . Z 9 -46.25 -6.404 -52.296 1 164.85 ? C6 ADP 600 D 1 HETATM 23 N N6 ADP . . . Z 9 -47.557 -6.735 -52.426 1 164.35 ? N6 ADP 600 D 1 HETATM 24 N N1 ADP . . . Z 9 -45.533 -6.795 -51.219 1 164.54 ? N1 ADP 600 D 1 HETATM 25 C C2 ADP . . . Z 9 -44.234 -6.472 -51.077 1 163.88 ? C2 ADP 600 D 1 HETATM 26 N N3 ADP . . . Z 9 -43.544 -5.743 -51.974 1 164.48 ? N3 ADP 600 D 1 HETATM 27 C C4 ADP . . . Z 9 -44.14 -5.284 -53.101 1 163.46 ? C4 ADP 600 D 1 # _model_server_stats.io_time_ms 122 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 49 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #