data_5FLG # _model_server_result.job_id DKuX8a3feWwifDab_kn7zA _model_server_result.datetime_utc '2024-11-23 12:01:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5flg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":702}' # _entry.id 5FLG # _exptl.entry_id 5FLG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5FLG _cell.length_a 49.59 _cell.length_b 77.9 _cell.length_c 166 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5FLG _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 196 A ASP 195 1_555 F MG MG . A MG 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc2 A OD1 ASP 197 A ASP 196 1_555 F MG MG . A MG 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc3 D O2A ANP . A ANP 702 1_555 E MG MG . A MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? metalc ? metalc4 D O1B ANP . A ANP 702 1_555 E MG MG . A MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? metalc ? metalc5 D O3G ANP . A ANP 702 1_555 E MG MG . A MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc6 D O1A ANP . A ANP 702 1_555 F MG MG . A MG 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.573 ? metalc ? metalc7 D O3A ANP . A ANP 702 1_555 F MG MG . A MG 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.728 ? metalc ? metalc8 D O2G ANP . A ANP 702 1_555 F MG MG . A MG 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc9 E MG MG . A MG 703 1_555 K O HOH . A HOH 2007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc10 E MG MG . A MG 703 1_555 K O HOH . A HOH 2033 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? metalc ? metalc11 E MG MG . A MG 703 1_555 K O HOH . A HOH 2043 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc12 F MG MG . A MG 704 1_555 K O HOH . A HOH 2006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? metalc ? metalc13 F MG MG . A MG 704 1_555 K O HOH . A HOH 2039 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.726 ? metalc ? metalc14 B OD1 ASP 196 B ASP 195 1_555 J MG MG . B MG 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc15 B OD1 ASP 197 B ASP 196 1_555 J MG MG . B MG 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc16 H O2G ANP . B ANP 702 1_555 I MG MG . B MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.926 ? metalc ? metalc17 H O1B ANP . B ANP 702 1_555 I MG MG . B MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc18 H O2A ANP . B ANP 702 1_555 I MG MG . B MG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.898 ? metalc ? metalc19 H O1A ANP . B ANP 702 1_555 J MG MG . B MG 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.505 ? metalc ? metalc20 H O1G ANP . B ANP 702 1_555 J MG MG . B MG 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc21 H O3A ANP . B ANP 702 1_555 J MG MG . B MG 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.917 ? metalc ? metalc22 I MG MG . B MG 703 1_555 L O HOH . B HOH 2006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.948 ? metalc ? metalc23 I MG MG . B MG 703 1_555 L O HOH . B HOH 2019 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc24 I MG MG . B MG 703 1_555 L O HOH . B HOH 2029 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.924 ? metalc ? metalc25 J MG MG . B MG 704 1_555 L O HOH . B HOH 2005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.505 ? metalc ? metalc26 J MG MG . B MG 704 1_555 L O HOH . B HOH 2025 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.79 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 5FLG _atom_sites.fract_transf_matrix[1][1] 0.020165 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012837 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006024 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PML A 1 701 701 PML PML . D 3 ANP A 1 702 702 ANP ANP . E 4 MG A 1 703 703 MG MG . F 4 MG A 1 704 704 MG MG . G 2 PML B 1 701 701 PML PML . H 3 ANP B 1 702 702 ANP ANP . I 4 MG B 1 703 703 MG MG . J 4 MG B 1 704 704 MG MG . K 5 HOH A 1 2001 2001 HOH HOH . K 5 HOH A 2 2002 2002 HOH HOH . K 5 HOH A 3 2003 2003 HOH HOH . K 5 HOH A 4 2004 2004 HOH HOH . K 5 HOH A 5 2005 2005 HOH HOH . K 5 HOH A 6 2006 2006 HOH HOH . K 5 HOH A 7 2007 2007 HOH HOH . K 5 HOH A 8 2008 2008 HOH HOH . K 5 HOH A 9 2009 2009 HOH HOH . K 5 HOH A 10 2010 2010 HOH HOH . K 5 HOH A 11 2011 2011 HOH HOH . K 5 HOH A 12 2012 2012 HOH HOH . K 5 HOH A 13 2013 2013 HOH HOH . K 5 HOH A 14 2014 2014 HOH HOH . K 5 HOH A 15 2015 2015 HOH HOH . K 5 HOH A 16 2016 2016 HOH HOH . K 5 HOH A 17 2017 2017 HOH HOH . K 5 HOH A 18 2018 2018 HOH HOH . K 5 HOH A 19 2019 2019 HOH HOH . K 5 HOH A 20 2020 2020 HOH HOH . K 5 HOH A 21 2021 2021 HOH HOH . K 5 HOH A 22 2022 2022 HOH HOH . K 5 HOH A 23 2023 2023 HOH HOH . K 5 HOH A 24 2024 2024 HOH HOH . K 5 HOH A 25 2025 2025 HOH HOH . K 5 HOH A 26 2026 2026 HOH HOH . K 5 HOH A 27 2027 2027 HOH HOH . K 5 HOH A 28 2028 2028 HOH HOH . K 5 HOH A 29 2029 2029 HOH HOH . K 5 HOH A 30 2030 2030 HOH HOH . K 5 HOH A 31 2031 2031 HOH HOH . K 5 HOH A 32 2032 2032 HOH HOH . K 5 HOH A 33 2033 2033 HOH HOH . K 5 HOH A 34 2034 2034 HOH HOH . K 5 HOH A 35 2035 2035 HOH HOH . K 5 HOH A 36 2036 2036 HOH HOH . K 5 HOH A 37 2037 2037 HOH HOH . K 5 HOH A 38 2038 2038 HOH HOH . K 5 HOH A 39 2039 2039 HOH HOH . K 5 HOH A 40 2040 2040 HOH HOH . K 5 HOH A 41 2041 2041 HOH HOH . K 5 HOH A 42 2042 2042 HOH HOH . K 5 HOH A 43 2043 2043 HOH HOH . L 5 HOH B 1 2001 2001 HOH HOH . L 5 HOH B 2 2002 2002 HOH HOH . L 5 HOH B 3 2003 2003 HOH HOH . L 5 HOH B 4 2004 2004 HOH HOH . L 5 HOH B 5 2005 2005 HOH HOH . L 5 HOH B 6 2006 2006 HOH HOH . L 5 HOH B 7 2007 2007 HOH HOH . L 5 HOH B 8 2008 2008 HOH HOH . L 5 HOH B 9 2009 2009 HOH HOH . L 5 HOH B 10 2010 2010 HOH HOH . L 5 HOH B 11 2011 2011 HOH HOH . L 5 HOH B 12 2012 2012 HOH HOH . L 5 HOH B 13 2013 2013 HOH HOH . L 5 HOH B 14 2014 2014 HOH HOH . L 5 HOH B 15 2015 2015 HOH HOH . L 5 HOH B 16 2016 2016 HOH HOH . L 5 HOH B 17 2017 2017 HOH HOH . L 5 HOH B 18 2018 2018 HOH HOH . L 5 HOH B 19 2019 2019 HOH HOH . L 5 HOH B 20 2020 2020 HOH HOH . L 5 HOH B 21 2021 2021 HOH HOH . L 5 HOH B 22 2022 2022 HOH HOH . L 5 HOH B 23 2023 2023 HOH HOH . L 5 HOH B 24 2024 2024 HOH HOH . L 5 HOH B 25 2025 2025 HOH HOH . L 5 HOH B 26 2026 2026 HOH HOH . L 5 HOH B 27 2027 2027 HOH HOH . L 5 HOH B 28 2028 2028 HOH HOH . L 5 HOH B 29 2029 2029 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . H 3 -16.237 36.439 107.616 1 27.62 ? PG ANP 702 B 1 HETATM 2 O O1G ANP . . . H 3 -16.127 37.009 108.994 1 26.24 ? O1G ANP 702 B 1 HETATM 3 O O2G ANP . . . H 3 -17.173 35.223 107.442 1 26.47 ? O2G ANP 702 B 1 HETATM 4 O O3G ANP . . . H 3 -16.244 37.517 106.553 1 25.82 ? O3G ANP 702 B 1 HETATM 5 P PB ANP . . . H 3 -14.558 34.01 107.777 1 28.38 ? PB ANP 702 B 1 HETATM 6 O O1B ANP . . . H 3 -15.418 33.142 106.954 1 23.39 ? O1B ANP 702 B 1 HETATM 7 O O2B ANP . . . H 3 -13.089 33.694 107.527 1 23.48 ? O2B ANP 702 B 1 HETATM 8 N N3B ANP . . . H 3 -14.705 35.665 107.384 1 26.33 ? N3B ANP 702 B 1 HETATM 9 P PA ANP . . . H 3 -16.072 33.432 110.17 1 32.17 ? PA ANP 702 B 1 HETATM 10 O O1A ANP . . . H 3 -16.238 34.415 111.25 1 29.53 ? O1A ANP 702 B 1 HETATM 11 O O2A ANP . . . H 3 -17.171 33.22 109.117 1 28.1 ? O2A ANP 702 B 1 HETATM 12 O O3A ANP . . . H 3 -14.708 33.755 109.361 1 29.67 ? O3A ANP 702 B 1 HETATM 13 O O5' ANP . . . H 3 -15.517 32.066 110.819 1 30.42 ? O5' ANP 702 B 1 HETATM 14 C C5' ANP . . . H 3 -14.632 32.152 111.926 1 33.16 ? C5' ANP 702 B 1 HETATM 15 C C4' ANP . . . H 3 -13.431 31.247 111.73 1 32.9 ? C4' ANP 702 B 1 HETATM 16 O O4' ANP . . . H 3 -13.824 29.956 111.24 1 30.45 ? O4' ANP 702 B 1 HETATM 17 C C3' ANP . . . H 3 -12.515 31.836 110.68 1 30.6 ? C3' ANP 702 B 1 HETATM 18 O O3' ANP . . . H 3 -11.563 32.739 111.26 1 32.58 ? O3' ANP 702 B 1 HETATM 19 C C2' ANP . . . H 3 -11.896 30.613 110.047 1 32.75 ? C2' ANP 702 B 1 HETATM 20 O O2' ANP . . . H 3 -10.691 30.238 110.745 1 28.36 ? O2' ANP 702 B 1 HETATM 21 C C1' ANP . . . H 3 -12.997 29.557 110.18 1 28.62 ? C1' ANP 702 B 1 HETATM 22 N N9 ANP . . . H 3 -13.79 29.431 108.934 1 31.78 ? N9 ANP 702 B 1 HETATM 23 C C8 ANP . . . H 3 -14.647 30.329 108.386 1 31.34 ? C8 ANP 702 B 1 HETATM 24 N N7 ANP . . . H 3 -15.144 29.871 107.22 1 28.65 ? N7 ANP 702 B 1 HETATM 25 C C5 ANP . . . H 3 -14.611 28.626 107.027 1 29.97 ? C5 ANP 702 B 1 HETATM 26 C C6 ANP . . . H 3 -14.618 27.603 105.965 1 29.3 ? C6 ANP 702 B 1 HETATM 27 N N6 ANP . . . H 3 -15.362 27.742 104.856 1 28.94 ? N6 ANP 702 B 1 HETATM 28 N N1 ANP . . . H 3 -13.797 26.54 106.095 1 30.39 ? N1 ANP 702 B 1 HETATM 29 C C2 ANP . . . H 3 -13.021 26.354 107.179 1 33.08 ? C2 ANP 702 B 1 HETATM 30 N N3 ANP . . . H 3 -12.897 27.264 108.154 1 28.37 ? N3 ANP 702 B 1 HETATM 31 C C4 ANP . . . H 3 -13.64 28.401 108.093 1 29.69 ? C4 ANP 702 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #