data_5FM0
#
_model_server_result.job_id            WpEVSbBcc_my7N9rfUE8TQ 
_model_server_result.datetime_utc      '2024-11-27 04:18:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5fm0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1257}' 
#
_entry.id    5FM0 
#
_exptl.entry_id    5FM0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              177.975 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            PYROPHOSPHATE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5FM0 
_cell.length_a            50.61 
_cell.length_b            78.36 
_cell.length_c            166.7 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5FM0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SD MET 17 A MET 16 1_555 G PT PT . A PT 1260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? 
metalc ? metalc2 A SD MET 17 A MET 16 1_555 I PT PT . A PT 1262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? 
metalc ? metalc3 A OD1 ASP 196 A ASP 195 1_555 F MG MG . A MG 1259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? 
metalc ? metalc4 A OD1 ASP 197 A ASP 196 1_555 F MG MG . A MG 1259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? 
metalc ? metalc5 A SD MET 210 A MET 209 1_555 H PT PT . A PT 1261 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.731 ? 
metalc ? metalc6 C OAH WAQ . A WAQ 1256 1_555 E MG MG . A MG 1258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? 
metalc ? metalc7 C OAD WAQ . A WAQ 1256 1_555 F MG MG . A MG 1259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? 
metalc ? metalc8 D O21 PPV . A PPV 1257 1_555 E MG MG . A MG 1258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? 
metalc ? metalc9 D O12 PPV . A PPV 1257 1_555 E MG MG . A MG 1258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? 
metalc ? metalc10 D O31 PPV . A PPV 1257 1_555 F MG MG . A MG 1259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.586 ? 
metalc ? metalc11 D O32 PPV . A PPV 1257 1_555 F MG MG . A MG 1259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? 
metalc ? metalc12 E MG MG . A MG 1258 1_555 O O HOH . A HOH 2005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? 
metalc ? metalc13 E MG MG . A MG 1258 1_555 O O HOH . A HOH 2006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? 
metalc ? metalc14 F MG MG . A MG 1259 1_555 O O HOH . A HOH 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? 
metalc ? metalc15 B SD MET 17 B MET 16 1_555 L PT PT . B PT 1259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? 
metalc ? metalc16 B SD MET 17 B MET 16 1_555 N PT PT . B PT 1261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? 
metalc ? metalc17 B SD MET 210 B MET 209 1_555 M PT PT . B PT 1260 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.655 ? 
#
_chem_comp.formula           'H4 O7 P2' 
_chem_comp.formula_weight    177.975 
_chem_comp.id                PPV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              PYROPHOSPHATE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O11 P1 PPV sing 260 n n 
O11 H11 PPV sing 261 n n 
P1 O21 PPV sing 262 n n 
P1 O31 PPV doub 263 n n 
P1 OPP PPV sing 264 n n 
O21 H21 PPV sing 265 n n 
OPP P2 PPV sing 266 n n 
P2 O12 PPV sing 267 n n 
P2 O22 PPV doub 268 n n 
P2 O32 PPV sing 269 n n 
O12 H12 PPV sing 270 n n 
O32 H32 PPV sing 271 n n 
#
_atom_sites.entry_id                     5FM0 
_atom_sites.fract_transf_matrix[1][1]    0.019759 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012762 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005999 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 WAQ A 1 1256 1256 WAQ WAQ . 
D 3 PPV A 1 1257 1257 PPV PPV . 
E 4 MG A 1 1258 1258 MG MG . 
F 4 MG A 1 1259 1259 MG MG . 
G 5 PT A 1 1260 1260 PT PT . 
H 5 PT A 1 1261 1261 PT PT . 
I 5 PT A 1 1262 1262 PT PT . 
J 2 WAQ B 1 1257 1257 WAQ WAQ . 
K 3 PPV B 1 1258 1258 PPV PPV . 
L 5 PT B 1 1259 1259 PT PT . 
M 5 PT B 1 1260 1260 PT PT . 
N 5 PT B 1 1261 1261 PT PT . 
O 6 HOH A 1 2001 2001 HOH HOH . 
O 6 HOH A 2 2002 2002 HOH HOH . 
O 6 HOH A 3 2003 2003 HOH HOH . 
O 6 HOH A 4 2004 2004 HOH HOH . 
O 6 HOH A 5 2005 2005 HOH HOH . 
O 6 HOH A 6 2006 2006 HOH HOH . 
O 6 HOH A 7 2007 2007 HOH HOH . 
O 6 HOH A 8 2008 2008 HOH HOH . 
O 6 HOH A 9 2009 2009 HOH HOH . 
O 6 HOH A 10 2010 2010 HOH HOH . 
P 6 HOH B 1 2001 2001 HOH HOH . 
P 6 HOH B 2 2002 2002 HOH HOH . 
P 6 HOH B 3 2003 2003 HOH HOH . 
P 6 HOH B 4 2004 2004 HOH HOH . 
P 6 HOH B 5 2005 2005 HOH HOH . 
P 6 HOH B 6 2006 2006 HOH HOH . 
P 6 HOH B 7 2007 2007 HOH HOH . 
P 6 HOH B 8 2008 2008 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O11 PPV . . . D 3 11.568 -33.927 -23.839 1 55.99 ? O11 PPV 1257 A 1 
HETATM 2 P P1 PPV . . . D 3 10.326 -34.178 -24.695 1 53.96 ? P1 PPV 1257 A 1 
HETATM 3 O O21 PPV . . . D 3 9.047 -33.419 -24.281 1 50.73 ? O21 PPV 1257 A 1 
HETATM 4 O O31 PPV . . . D 3 10.663 -34.177 -26.175 1 53.67 ? O31 PPV 1257 A 1 
HETATM 5 O OPP PPV . . . D 3 9.977 -35.743 -24.375 1 73.81 ? OPP PPV 1257 A 1 
HETATM 6 P P2 PPV . . . D 3 8.538 -36.447 -24.639 1 59.93 ? P2 PPV 1257 A 1 
HETATM 7 O O12 PPV . . . D 3 7.557 -35.313 -24.426 1 63.84 ? O12 PPV 1257 A 1 
HETATM 8 O O22 PPV . . . D 3 8.484 -37.536 -23.579 1 66.79 ? O22 PPV 1257 A 1 
HETATM 9 O O32 PPV . . . D 3 8.642 -36.927 -26.075 1 81.51 ? O32 PPV 1257 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           248 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           9 
#