data_5FM0 # _model_server_result.job_id zyDXUEyhwpyxD36L33L7gg _model_server_result.datetime_utc '2024-10-18 16:22:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5fm0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":1258}' # _entry.id 5FM0 # _exptl.entry_id 5FM0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 177.975 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PYROPHOSPHATE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5FM0 _cell.length_a 50.61 _cell.length_b 78.36 _cell.length_c 166.7 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5FM0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SD MET 17 A MET 16 1_555 G PT PT . A PT 1260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? metalc ? metalc2 A SD MET 17 A MET 16 1_555 I PT PT . A PT 1262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc3 A OD1 ASP 196 A ASP 195 1_555 F MG MG . A MG 1259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc4 A OD1 ASP 197 A ASP 196 1_555 F MG MG . A MG 1259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc5 A SD MET 210 A MET 209 1_555 H PT PT . A PT 1261 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.731 ? metalc ? metalc6 C OAH WAQ . A WAQ 1256 1_555 E MG MG . A MG 1258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? metalc ? metalc7 C OAD WAQ . A WAQ 1256 1_555 F MG MG . A MG 1259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc8 D O21 PPV . A PPV 1257 1_555 E MG MG . A MG 1258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc9 D O12 PPV . A PPV 1257 1_555 E MG MG . A MG 1258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc10 D O31 PPV . A PPV 1257 1_555 F MG MG . A MG 1259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.586 ? metalc ? metalc11 D O32 PPV . A PPV 1257 1_555 F MG MG . A MG 1259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc12 E MG MG . A MG 1258 1_555 O O HOH . A HOH 2005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc13 E MG MG . A MG 1258 1_555 O O HOH . A HOH 2006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc14 F MG MG . A MG 1259 1_555 O O HOH . A HOH 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc15 B SD MET 17 B MET 16 1_555 L PT PT . B PT 1259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc16 B SD MET 17 B MET 16 1_555 N PT PT . B PT 1261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? metalc ? metalc17 B SD MET 210 B MET 209 1_555 M PT PT . B PT 1260 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.655 ? # _chem_comp.formula 'H4 O7 P2' _chem_comp.formula_weight 177.975 _chem_comp.id PPV _chem_comp.mon_nstd_flag . _chem_comp.name PYROPHOSPHATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O11 P1 PPV sing 260 n n O11 H11 PPV sing 261 n n P1 O21 PPV sing 262 n n P1 O31 PPV doub 263 n n P1 OPP PPV sing 264 n n O21 H21 PPV sing 265 n n OPP P2 PPV sing 266 n n P2 O12 PPV sing 267 n n P2 O22 PPV doub 268 n n P2 O32 PPV sing 269 n n O12 H12 PPV sing 270 n n O32 H32 PPV sing 271 n n # _atom_sites.entry_id 5FM0 _atom_sites.fract_transf_matrix[1][1] 0.019759 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012762 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005999 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 WAQ A 1 1256 1256 WAQ WAQ . D 3 PPV A 1 1257 1257 PPV PPV . E 4 MG A 1 1258 1258 MG MG . F 4 MG A 1 1259 1259 MG MG . G 5 PT A 1 1260 1260 PT PT . H 5 PT A 1 1261 1261 PT PT . I 5 PT A 1 1262 1262 PT PT . J 2 WAQ B 1 1257 1257 WAQ WAQ . K 3 PPV B 1 1258 1258 PPV PPV . L 5 PT B 1 1259 1259 PT PT . M 5 PT B 1 1260 1260 PT PT . N 5 PT B 1 1261 1261 PT PT . O 6 HOH A 1 2001 2001 HOH HOH . O 6 HOH A 2 2002 2002 HOH HOH . O 6 HOH A 3 2003 2003 HOH HOH . O 6 HOH A 4 2004 2004 HOH HOH . O 6 HOH A 5 2005 2005 HOH HOH . O 6 HOH A 6 2006 2006 HOH HOH . O 6 HOH A 7 2007 2007 HOH HOH . O 6 HOH A 8 2008 2008 HOH HOH . O 6 HOH A 9 2009 2009 HOH HOH . O 6 HOH A 10 2010 2010 HOH HOH . P 6 HOH B 1 2001 2001 HOH HOH . P 6 HOH B 2 2002 2002 HOH HOH . P 6 HOH B 3 2003 2003 HOH HOH . P 6 HOH B 4 2004 2004 HOH HOH . P 6 HOH B 5 2005 2005 HOH HOH . P 6 HOH B 6 2006 2006 HOH HOH . P 6 HOH B 7 2007 2007 HOH HOH . P 6 HOH B 8 2008 2008 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O11 PPV . . . K 3 19.263 -39.87 5.673 0.5 39.34 ? O11 PPV 1258 B 1 HETATM 2 P P1 PPV . . . K 3 18.389 -40.807 6.458 0.5 39.89 ? P1 PPV 1258 B 1 HETATM 3 O O21 PPV . . . K 3 18.523 -42.284 6.159 0.5 39.15 ? O21 PPV 1258 B 1 HETATM 4 O O31 PPV . . . K 3 18.297 -40.435 7.93 0.5 45.48 ? O31 PPV 1258 B 1 HETATM 5 O OPP PPV . . . K 3 16.898 -40.513 5.926 0.5 44.81 ? OPP PPV 1258 B 1 HETATM 6 P P2 PPV . . . K 3 15.682 -41.364 6.523 0.5 41.95 ? P2 PPV 1258 B 1 HETATM 7 O O12 PPV . . . K 3 16.152 -42.77 6.336 0.5 40.97 ? O12 PPV 1258 B 1 HETATM 8 O O22 PPV . . . K 3 14.502 -40.944 5.687 0.5 48.76 ? O22 PPV 1258 B 1 HETATM 9 O O32 PPV . . . K 3 15.587 -40.98 7.984 0.5 53.57 ? O32 PPV 1258 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 9 #