data_5FM3 # _model_server_result.job_id 8M296ZnJDeLOogFlGk04EQ _model_server_result.datetime_utc '2024-11-24 17:07:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5fm3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":2012}' # _entry.id 5FM3 # _exptl.entry_id 5FM3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 281.356 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-TER-BUTYL-3-P-TOLYL-1H-PYRAZOLO[3,4-D]PYRIMIDIN-4-YLAMINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5FM3 _cell.length_a 98.569 _cell.length_b 98.569 _cell.length_c 146.301 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5FM3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LYS 150 A LYS 808 1_555 A N PTR 151 A PTR 809 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C PTR 151 A PTR 809 1_555 A N GLY 152 A GLY 810 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 A C SER 246 A SER 904 1_555 A N PTR 247 A PTR 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 A C PTR 247 A PTR 905 1_555 A N VAL 248 A VAL 906 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale5 A C ARG 250 A ARG 908 1_555 A N SEP 251 A SEP 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale6 A C SEP 251 A SEP 909 1_555 A N GLN 252 A GLN 910 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale7 A C ILE 269 A ILE 927 1_555 A N PTR 270 A PTR 928 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale8 A C PTR 270 A PTR 928 1_555 A N THR 271 A THR 929 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C16 H19 N5' _chem_comp.formula_weight 281.356 _chem_comp.id PP1 _chem_comp.mon_nstd_flag . _chem_comp.name 1-TER-BUTYL-3-P-TOLYL-1H-PYRAZOLO[3,4-D]PYRIMIDIN-4-YLAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C4 PP1 sing 260 n y N1 N8 PP1 sing 261 n y N1 C28 PP1 sing 262 n n C2 N3 PP1 doub 263 n y C2 N7 PP1 sing 264 n y C2 HC2 PP1 sing 265 n n N3 C4 PP1 sing 266 n y C4 C5 PP1 doub 267 n y C5 C6 PP1 sing 268 n y C5 C9 PP1 sing 269 n y C6 N7 PP1 doub 270 n y C6 N10 PP1 sing 271 n n N8 C9 PP1 doub 272 n y C9 C11 PP1 sing 273 n y N10 H101 PP1 sing 274 n n N10 H102 PP1 sing 275 n n C11 C12 PP1 doub 276 n y C11 C16 PP1 sing 277 n y C12 C13 PP1 sing 278 n y C12 HC12 PP1 sing 279 n n C13 C14 PP1 doub 280 n y C13 HC13 PP1 sing 281 n n C14 C15 PP1 sing 282 n y C14 C24 PP1 sing 283 n n C15 C16 PP1 doub 284 n y C15 HC15 PP1 sing 285 n n C16 HC16 PP1 sing 286 n n C24 H241 PP1 sing 287 n n C24 H242 PP1 sing 288 n n C24 H243 PP1 sing 289 n n C28 C29 PP1 sing 290 n n C28 C33 PP1 sing 291 n n C28 C37 PP1 sing 292 n n C29 H291 PP1 sing 293 n n C29 H292 PP1 sing 294 n n C29 H293 PP1 sing 295 n n C33 H331 PP1 sing 296 n n C33 H332 PP1 sing 297 n n C33 H333 PP1 sing 298 n n C37 H371 PP1 sing 299 n n C37 H372 PP1 sing 300 n n C37 H373 PP1 sing 301 n n # _atom_sites.entry_id 5FM3 _atom_sites.fract_transf_matrix[1][1] 0.010145 _atom_sites.fract_transf_matrix[1][2] 0.005857 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011715 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006835 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PP1 A 1 2012 2012 PP1 PP1 . C 3 HOH A 1 2001 2001 HOH HOH . C 3 HOH A 2 2002 2002 HOH HOH . C 3 HOH A 3 2003 2003 HOH HOH . C 3 HOH A 4 2004 2004 HOH HOH . C 3 HOH A 5 2005 2005 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PP1 . . . B 2 -2.452 -25.837 -7.139 1 54.88 ? N1 PP1 2012 A 1 HETATM 2 C C2 PP1 . . . B 2 0.81 -25.258 -8.674 1 62.23 ? C2 PP1 2012 A 1 HETATM 3 N N3 PP1 . . . B 2 -0.378 -24.888 -8.165 1 63.25 ? N3 PP1 2012 A 1 HETATM 4 C C4 PP1 . . . B 2 -1.24 -25.819 -7.693 1 55.5 ? C4 PP1 2012 A 1 HETATM 5 C C5 PP1 . . . B 2 -0.859 -27.241 -7.744 1 51.93 ? C5 PP1 2012 A 1 HETATM 6 C C6 PP1 . . . B 2 0.467 -27.564 -8.322 1 55.2 ? C6 PP1 2012 A 1 HETATM 7 N N7 PP1 . . . B 2 1.228 -26.535 -8.757 1 57.33 ? N7 PP1 2012 A 1 HETATM 8 N N8 PP1 . . . B 2 -2.95 -27.106 -6.804 1 56.09 ? N8 PP1 2012 A 1 HETATM 9 C C9 PP1 . . . B 2 -2 -28.007 -7.165 1 49.72 ? C9 PP1 2012 A 1 HETATM 10 N N10 PP1 . . . B 2 0.904 -28.844 -8.411 1 52.57 ? N10 PP1 2012 A 1 HETATM 11 C C11 PP1 . . . B 2 -2.082 -29.484 -6.994 1 47.27 ? C11 PP1 2012 A 1 HETATM 12 C C12 PP1 . . . B 2 -3.002 -30.225 -7.725 1 52.15 ? C12 PP1 2012 A 1 HETATM 13 C C13 PP1 . . . B 2 -3.075 -31.603 -7.555 1 49.75 ? C13 PP1 2012 A 1 HETATM 14 C C14 PP1 . . . B 2 -2.232 -32.236 -6.65 1 47.46 ? C14 PP1 2012 A 1 HETATM 15 C C15 PP1 . . . B 2 -1.318 -31.494 -5.915 1 46.15 ? C15 PP1 2012 A 1 HETATM 16 C C16 PP1 . . . B 2 -1.243 -30.118 -6.086 1 48.93 ? C16 PP1 2012 A 1 HETATM 17 C C24 PP1 . . . B 2 -2.307 -33.728 -6.46 1 50.46 ? C24 PP1 2012 A 1 HETATM 18 C C28 PP1 . . . B 2 -3.245 -24.608 -6.883 1 44.89 ? C28 PP1 2012 A 1 HETATM 19 C C29 PP1 . . . B 2 -3.48 -23.88 -8.201 1 45.33 ? C29 PP1 2012 A 1 HETATM 20 C C33 PP1 . . . B 2 -2.486 -23.71 -5.914 1 38.68 ? C33 PP1 2012 A 1 HETATM 21 C C37 PP1 . . . B 2 -4.583 -25.015 -6.28 1 45.16 ? C37 PP1 2012 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 213 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 21 #