data_5FMQ # _model_server_result.job_id pjjpx0lleyL2vfGsVr0i5Q _model_server_result.datetime_utc '2024-11-08 03:12:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5fmq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1676}' # _entry.id 5FMQ # _exptl.entry_id 5FMQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 539.223 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "7N-METHYL-8-HYDROGUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5FMQ _cell.length_a 123.05 _cell.length_b 123.05 _cell.length_c 229.86 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5FMQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H20 N5 O14 P3' _chem_comp.formula_weight 539.223 _chem_comp.id MGT _chem_comp.mon_nstd_flag n _chem_comp.name "7N-METHYL-8-HYDROGUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G MGT doub 235 n n PG O2G MGT sing 236 n n PG O3G MGT sing 237 n n PG O3B MGT sing 238 n n O2G HOG2 MGT sing 239 n n O3G HOG3 MGT sing 240 n n O3B PB MGT sing 241 n n PB O1B MGT doub 242 n n PB O2B MGT sing 243 n n PB O3A MGT sing 244 n n O2B HOB2 MGT sing 245 n n O3A PA MGT sing 246 n n PA O1A MGT doub 247 n n PA O2A MGT sing 248 n n PA O5' MGT sing 249 n n O2A HOA2 MGT sing 250 n n O5' C5' MGT sing 251 n n C5' C4' MGT sing 252 n n C5' "H5'1" MGT sing 253 n n C5' "H5'2" MGT sing 254 n n C4' O4' MGT sing 255 n n C4' C3' MGT sing 256 n n C4' H4' MGT sing 257 n n O4' C1' MGT sing 258 n n C3' O3' MGT sing 259 n n C3' C2' MGT sing 260 n n C3' H3' MGT sing 261 n n O3' HO3' MGT sing 262 n n C2' O2' MGT sing 263 n n C2' C1' MGT sing 264 n n C2' H2' MGT sing 265 n n O2' HO2' MGT sing 266 n n C1' N9 MGT sing 267 n n C1' H1' MGT sing 268 n n N9 C8 MGT sing 269 n n N9 C4 MGT sing 270 n n C8 N7 MGT sing 271 n n C8 H81 MGT sing 272 n n C8 H82 MGT sing 273 n n N7 CM7 MGT sing 274 n n N7 C5 MGT sing 275 n n CM7 HM71 MGT sing 276 n n CM7 HM72 MGT sing 277 n n CM7 HM73 MGT sing 278 n n C5 C6 MGT sing 279 n n C5 C4 MGT doub 280 n n C6 O6 MGT doub 281 n n C6 N1 MGT sing 282 n n N1 C2 MGT sing 283 n n N1 HN1 MGT sing 284 n n C2 N2 MGT sing 285 n n C2 N3 MGT doub 286 n n N2 HN21 MGT sing 287 n n N2 HN22 MGT sing 288 n n N3 C4 MGT sing 289 n n # _atom_sites.entry_id 5FMQ _atom_sites.fract_transf_matrix[1][1] 0.008127 _atom_sites.fract_transf_matrix[1][2] 0.004692 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009384 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00435 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id MGT _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 1676 _pdbx_nonpoly_scheme.auth_seq_num 1676 _pdbx_nonpoly_scheme.pdb_mon_id MGT _pdbx_nonpoly_scheme.auth_mon_id MGT _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O3B MGT . . . B 2 71.871 107.888 21.337 1 91.68 ? O3B MGT 1676 A 1 HETATM 2 P PB MGT . . . B 2 72.453 106.659 20.679 1 92.3 ? PB MGT 1676 A 1 HETATM 3 O O1B MGT . . . B 2 71.9 106.182 19.359 1 91.92 ? O1B MGT 1676 A 1 HETATM 4 O O2B MGT . . . B 2 72.358 105.442 21.73 1 92.34 ? O2B MGT 1676 A 1 HETATM 5 O O3A MGT . . . B 2 74.046 106.861 20.523 1 90.49 ? O3A MGT 1676 A 1 HETATM 6 P PA MGT . . . B 2 74.763 107.269 19.134 1 88.01 ? PA MGT 1676 A 1 HETATM 7 O O1A MGT . . . B 2 73.813 108.097 18.299 1 87.32 ? O1A MGT 1676 A 1 HETATM 8 O O2A MGT . . . B 2 75.339 106.007 18.546 1 87.35 ? O2A MGT 1676 A 1 HETATM 9 O O5' MGT . . . B 2 75.994 108.226 19.562 1 86.62 ? O5' MGT 1676 A 1 HETATM 10 C C5' MGT . . . B 2 76.324 108.627 20.899 1 84.98 ? C5' MGT 1676 A 1 HETATM 11 C C4' MGT . . . B 2 75.979 110.097 21.139 1 83.28 ? C4' MGT 1676 A 1 HETATM 12 O O4' MGT . . . B 2 76.743 110.916 20.25 1 82.18 ? O4' MGT 1676 A 1 HETATM 13 C C3' MGT . . . B 2 74.507 110.437 20.914 1 82.25 ? C3' MGT 1676 A 1 HETATM 14 O O3' MGT . . . B 2 73.982 111.174 22.022 1 81.93 ? O3' MGT 1676 A 1 HETATM 15 C C2' MGT . . . B 2 74.465 111.272 19.648 1 81.64 ? C2' MGT 1676 A 1 HETATM 16 O O2' MGT . . . B 2 73.549 112.37 19.739 1 81.28 ? O2' MGT 1676 A 1 HETATM 17 C C1' MGT . . . B 2 75.892 111.767 19.474 1 81.36 ? C1' MGT 1676 A 1 HETATM 18 N N9 MGT . . . B 2 76.26 111.786 18.033 1 80.44 ? N9 MGT 1676 A 1 HETATM 19 C C8 MGT . . . B 2 76.758 110.522 17.485 1 80.37 ? C8 MGT 1676 A 1 HETATM 20 N N7 MGT . . . B 2 76.976 110.995 16.125 1 79.85 ? N7 MGT 1676 A 1 HETATM 21 C CM7 MGT . . . B 2 77.511 109.93 15.237 1 80.11 ? CM7 MGT 1676 A 1 HETATM 22 C C5 MGT . . . B 2 76.657 112.273 15.912 1 78.72 ? C5 MGT 1676 A 1 HETATM 23 C C6 MGT . . . B 2 76.717 113.161 14.732 1 77.94 ? C6 MGT 1676 A 1 HETATM 24 O O6 MGT . . . B 2 77.114 112.741 13.627 1 77.9 ? O6 MGT 1676 A 1 HETATM 25 N N1 MGT . . . B 2 76.299 114.432 14.921 1 77.43 ? N1 MGT 1676 A 1 HETATM 26 C C2 MGT . . . B 2 75.856 114.885 16.125 1 77.51 ? C2 MGT 1676 A 1 HETATM 27 N N2 MGT . . . B 2 75.452 116.169 16.233 1 77.24 ? N2 MGT 1676 A 1 HETATM 28 N N3 MGT . . . B 2 75.787 114.114 17.246 1 78 ? N3 MGT 1676 A 1 HETATM 29 C C4 MGT . . . B 2 76.173 112.819 17.197 1 79.01 ? C4 MGT 1676 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 29 #