data_5FMV
#
_model_server_result.job_id            jcy4uypve3WuMG0T97nmvw 
_model_server_result.datetime_utc      '2025-02-05 06:02:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5fmv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":1573}' 
#
_entry.id    5FMV 
#
_exptl.entry_id    5FMV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    11 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          111.66 
_cell.angle_gamma         90 
_cell.entry_id            5FMV 
_cell.length_a            94.55 
_cell.length_b            59.41 
_cell.length_c            100.42 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5FMV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J 1 1 
B,K,L,M,N,O,P,Q,R 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 7 A CYS 226 1_555 A SG CYS 67 A CYS 286 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf2 A SG CYS 39 A CYS 258 1_555 A SG CYS 44 A CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf3 A SG CYS 55 A CYS 274 1_555 A SG CYS 112 A CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf4 A SG CYS 90 A CYS 309 1_555 A SG CYS 101 A CYS 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
disulf ? disulf5 A SG CYS 123 A CYS 342 1_555 A SG CYS 146 A CYS 365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf6 A SG CYS 179 A CYS 398 1_555 A SG CYS 255 A CYS 474 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf7 A SG CYS 204 A CYS 423 1_555 A SG CYS 213 A CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf8 A SG CYS 284 A CYS 503 1_555 A SG CYS 316 A CYS 535 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf9 B SG CYS 7 B CYS 226 1_555 B SG CYS 67 B CYS 286 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf10 B SG CYS 39 B CYS 258 1_555 B SG CYS 44 B CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf11 B SG CYS 55 B CYS 274 1_555 B SG CYS 112 B CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf12 B SG CYS 90 B CYS 309 1_555 B SG CYS 101 B CYS 320 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
disulf ? disulf13 B SG CYS 123 B CYS 342 1_555 B SG CYS 146 B CYS 365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf14 B SG CYS 179 B CYS 398 1_555 B SG CYS 255 B CYS 474 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf15 B SG CYS 204 B CYS 423 1_555 B SG CYS 213 B CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf16 B SG CYS 284 B CYS 503 1_555 B SG CYS 316 B CYS 535 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
covale ? covale1 A ND2 ASN 159 A ASN 378 1_555 G C1 NAG . A NAG 1579 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? 
covale ? covale2 A ND2 ASN 200 A ASN 419 1_555 C C1 NAG . A NAG 1575 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? 
covale ? covale3 A ND2 ASN 249 A ASN 468 1_555 F C1 NAG . A NAG 1578 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? 
covale ? covale4 A ND2 ASN 269 A ASN 488 1_555 E C1 NAG . A NAG 1577 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? 
covale ? covale5 A ND2 ASN 310 A ASN 529 1_555 D C1 NAG . A NAG 1576 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? 
covale ? covale6 B ND2 ASN 116 B ASN 335 1_555 K C1 NAG . B NAG 1573 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? 
covale ? covale7 B ND2 ASN 159 B ASN 378 1_555 P C1 NAG . B NAG 1578 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? 
covale ? covale8 B ND2 ASN 200 B ASN 419 1_555 N C1 NAG . B NAG 1576 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? 
covale ? covale9 B ND2 ASN 249 B ASN 468 1_555 O C1 NAG . B NAG 1577 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.428 ? 
covale ? covale10 B ND2 ASN 269 B ASN 488 1_555 M C1 NAG . B NAG 1575 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? 
covale ? covale11 B ND2 ASN 310 B ASN 529 1_555 L C1 NAG . B NAG 1574 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 235 n n 
C1 O1 NAG sing 236 n n 
C1 O5 NAG sing 237 n n 
C1 H1 NAG sing 238 n n 
C2 C3 NAG sing 239 n n 
C2 N2 NAG sing 240 n n 
C2 H2 NAG sing 241 n n 
C3 C4 NAG sing 242 n n 
C3 O3 NAG sing 243 n n 
C3 H3 NAG sing 244 n n 
C4 C5 NAG sing 245 n n 
C4 O4 NAG sing 246 n n 
C4 H4 NAG sing 247 n n 
C5 C6 NAG sing 248 n n 
C5 O5 NAG sing 249 n n 
C5 H5 NAG sing 250 n n 
C6 O6 NAG sing 251 n n 
C6 H61 NAG sing 252 n n 
C6 H62 NAG sing 253 n n 
C7 C8 NAG sing 254 n n 
C7 N2 NAG sing 255 n n 
C7 O7 NAG doub 256 n n 
C8 H81 NAG sing 257 n n 
C8 H82 NAG sing 258 n n 
C8 H83 NAG sing 259 n n 
N2 HN2 NAG sing 260 n n 
O1 HO1 NAG sing 261 n n 
O3 HO3 NAG sing 262 n n 
O4 HO4 NAG sing 263 n n 
O6 HO6 NAG sing 264 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     5FMV 
_atom_sites.fract_transf_matrix[1][1]    0.010576 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.0042 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016832 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010715 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAG A 1 1575 1575 NAG NAG . 
D 2 NAG A 1 1576 1576 NAG NAG . 
E 2 NAG A 1 1577 1577 NAG NAG . 
F 2 NAG A 1 1578 1578 NAG NAG . 
G 2 NAG A 1 1579 1579 NAG NAG . 
H 3 SO4 A 1 1580 1580 SO4 SO4 . 
I 3 SO4 A 1 1581 1581 SO4 SO4 . 
J 3 SO4 A 1 1582 1582 SO4 SO4 . 
K 2 NAG B 1 1573 1573 NAG NAG . 
L 2 NAG B 1 1574 1574 NAG NAG . 
M 2 NAG B 1 1575 1575 NAG NAG . 
N 2 NAG B 1 1576 1576 NAG NAG . 
O 2 NAG B 1 1577 1577 NAG NAG . 
P 2 NAG B 1 1578 1578 NAG NAG . 
Q 3 SO4 B 1 1579 1579 SO4 SO4 . 
R 3 SO4 B 1 1580 1580 SO4 SO4 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . K 2 47.262 -41.657 36.886 1 123.65 ? C1 NAG 1573 B 1 
HETATM 2 C C2 NAG . . . K 2 47.692 -42.999 36.281 1 124.75 ? C2 NAG 1573 B 1 
HETATM 3 C C3 NAG . . . K 2 48.254 -43.926 37.36 1 125.09 ? C3 NAG 1573 B 1 
HETATM 4 C C4 NAG . . . K 2 49.329 -43.219 38.178 1 125.92 ? C4 NAG 1573 B 1 
HETATM 5 C C5 NAG . . . K 2 48.771 -41.919 38.753 1 125.47 ? C5 NAG 1573 B 1 
HETATM 6 C C6 NAG . . . K 2 49.789 -41.113 39.527 1 125.78 ? C6 NAG 1573 B 1 
HETATM 7 C C7 NAG . . . K 2 46.558 -44.123 34.372 1 123.95 ? C7 NAG 1573 B 1 
HETATM 8 C C8 NAG . . . K 2 45.253 -44.673 33.889 1 123.7 ? C8 NAG 1573 B 1 
HETATM 9 N N2 NAG . . . K 2 46.551 -43.624 35.626 1 124.52 ? N2 NAG 1573 B 1 
HETATM 10 O O3 NAG . . . K 2 48.829 -45.079 36.76 1 124.78 ? O3 NAG 1573 B 1 
HETATM 11 O O4 NAG . . . K 2 49.777 -44.064 39.233 1 126.25 ? O4 NAG 1573 B 1 
HETATM 12 O O5 NAG . . . K 2 48.302 -41.079 37.686 1 124.85 ? O5 NAG 1573 B 1 
HETATM 13 O O6 NAG . . . K 2 50.924 -40.78 38.73 1 125.66 ? O6 NAG 1573 B 1 
HETATM 14 O O7 NAG . . . K 2 47.575 -44.134 33.673 1 123.43 ? O7 NAG 1573 B 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           326 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           14 
#