data_5FN7 # _model_server_result.job_id 2NZ6kZC6vH4hlXrdWBrDlw _model_server_result.datetime_utc '2025-03-03 07:44:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5fn7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":1177}' # _entry.id 5FN7 # _exptl.entry_id 5FN7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5FN7 _cell.length_a 149.61 _cell.length_b 149.61 _cell.length_c 52.73 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5FN7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 63' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,N 1 1 B,I,J,K,L,M,O 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 11 A CYS 11 1_555 A SG CYS 71 A CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf2 A SG CYS 43 A CYS 43 1_555 A SG CYS 48 A CYS 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 A SG CYS 59 A CYS 59 1_555 A SG CYS 116 A CYS 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? disulf ? disulf4 A SG CYS 94 A CYS 94 1_555 A SG CYS 105 A CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf5 A SG CYS 127 A CYS 127 1_555 A SG CYS 150 A CYS 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? disulf ? disulf6 B SG CYS 11 B CYS 11 1_555 B SG CYS 71 B CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf7 B SG CYS 43 B CYS 43 1_555 B SG CYS 48 B CYS 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf8 B SG CYS 59 B CYS 59 1_555 B SG CYS 116 B CYS 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf9 B SG CYS 94 B CYS 94 1_555 B SG CYS 105 B CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf10 B SG CYS 127 B CYS 127 1_555 B SG CYS 150 B CYS 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? covale ? covale1 A ND2 ASN 55 A ASN 55 1_555 F C1 NAG . A NAG 1177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale2 A ND2 ASN 61 A ASN 61 1_555 C C1 NAG . A NAG 1174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale3 A ND2 ASN 120 A ASN 120 1_555 E C1 NAG . A NAG 1176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale4 A ND2 ASN 163 A ASN 163 1_555 D C1 NAG . A NAG 1175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? covale ? covale5 B ND2 ASN 17 B ASN 17 1_555 K C1 NAG . B NAG 1175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale6 B ND2 ASN 55 B ASN 55 1_555 I C1 NAG . B NAG 1173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale7 B ND2 ASN 61 B ASN 61 1_555 M C1 NAG . B NAG 1177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale8 B ND2 ASN 120 B ASN 120 1_555 L C1 NAG . B NAG 1176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale9 B ND2 ASN 163 B ASN 163 1_555 J C1 NAG . B NAG 1174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? metalc ? metalc1 A OE1 GLU 112 A GLU 112 1_555 H HG HG . A HG 1179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.124 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 5FN7 _atom_sites.fract_transf_matrix[1][1] 0.006684 _atom_sites.fract_transf_matrix[1][2] 0.003859 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007718 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018965 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAG A 1 1174 1174 NAG NAG . D 2 NAG A 1 1175 1175 NAG NAG . E 2 NAG A 1 1176 1176 NAG NAG . F 2 NAG A 1 1177 1177 NAG NAG . G 3 HG A 1 1178 1178 HG HG . H 3 HG A 1 1179 1179 HG HG . I 2 NAG B 1 1173 1173 NAG NAG . J 2 NAG B 1 1174 1174 NAG NAG . K 2 NAG B 1 1175 1175 NAG NAG . L 2 NAG B 1 1176 1176 NAG NAG . M 2 NAG B 1 1177 1177 NAG NAG . N 4 HOH A 1 2001 2001 HOH HOH . N 4 HOH A 2 2002 2002 HOH HOH . N 4 HOH A 3 2003 2003 HOH HOH . N 4 HOH A 4 2004 2004 HOH HOH . N 4 HOH A 5 2005 2005 HOH HOH . N 4 HOH A 6 2006 2006 HOH HOH . N 4 HOH A 7 2007 2007 HOH HOH . N 4 HOH A 8 2008 2008 HOH HOH . N 4 HOH A 9 2009 2009 HOH HOH . N 4 HOH A 10 2010 2010 HOH HOH . N 4 HOH A 11 2011 2011 HOH HOH . N 4 HOH A 12 2012 2012 HOH HOH . N 4 HOH A 13 2013 2013 HOH HOH . N 4 HOH A 14 2014 2014 HOH HOH . N 4 HOH A 15 2015 2015 HOH HOH . N 4 HOH A 16 2016 2016 HOH HOH . N 4 HOH A 17 2017 2017 HOH HOH . N 4 HOH A 18 2018 2018 HOH HOH . N 4 HOH A 19 2019 2019 HOH HOH . N 4 HOH A 20 2020 2020 HOH HOH . N 4 HOH A 21 2021 2021 HOH HOH . N 4 HOH A 22 2022 2022 HOH HOH . N 4 HOH A 23 2023 2023 HOH HOH . N 4 HOH A 24 2024 2024 HOH HOH . N 4 HOH A 25 2025 2025 HOH HOH . N 4 HOH A 26 2026 2026 HOH HOH . N 4 HOH A 27 2027 2027 HOH HOH . N 4 HOH A 28 2028 2028 HOH HOH . N 4 HOH A 29 2029 2029 HOH HOH . N 4 HOH A 30 2030 2030 HOH HOH . N 4 HOH A 31 2031 2031 HOH HOH . N 4 HOH A 32 2032 2032 HOH HOH . N 4 HOH A 33 2033 2033 HOH HOH . N 4 HOH A 34 2034 2034 HOH HOH . N 4 HOH A 35 2035 2035 HOH HOH . N 4 HOH A 36 2036 2036 HOH HOH . N 4 HOH A 37 2037 2037 HOH HOH . N 4 HOH A 38 2038 2038 HOH HOH . N 4 HOH A 39 2039 2039 HOH HOH . N 4 HOH A 40 2040 2040 HOH HOH . N 4 HOH A 41 2041 2041 HOH HOH . N 4 HOH A 42 2042 2042 HOH HOH . N 4 HOH A 43 2043 2043 HOH HOH . N 4 HOH A 44 2044 2044 HOH HOH . N 4 HOH A 45 2045 2045 HOH HOH . N 4 HOH A 46 2046 2046 HOH HOH . N 4 HOH A 47 2047 2047 HOH HOH . N 4 HOH A 48 2048 2048 HOH HOH . N 4 HOH A 49 2049 2049 HOH HOH . N 4 HOH A 50 2050 2050 HOH HOH . N 4 HOH A 51 2051 2051 HOH HOH . N 4 HOH A 52 2052 2052 HOH HOH . N 4 HOH A 53 2053 2053 HOH HOH . N 4 HOH A 54 2054 2054 HOH HOH . N 4 HOH A 55 2055 2055 HOH HOH . N 4 HOH A 56 2056 2056 HOH HOH . N 4 HOH A 57 2057 2057 HOH HOH . N 4 HOH A 58 2058 2058 HOH HOH . N 4 HOH A 59 2059 2059 HOH HOH . N 4 HOH A 60 2060 2060 HOH HOH . N 4 HOH A 61 2061 2061 HOH HOH . N 4 HOH A 62 2062 2062 HOH HOH . N 4 HOH A 63 2063 2063 HOH HOH . N 4 HOH A 64 2064 2064 HOH HOH . N 4 HOH A 65 2065 2065 HOH HOH . N 4 HOH A 66 2066 2066 HOH HOH . N 4 HOH A 67 2067 2067 HOH HOH . N 4 HOH A 68 2068 2068 HOH HOH . N 4 HOH A 69 2069 2069 HOH HOH . N 4 HOH A 70 2070 2070 HOH HOH . N 4 HOH A 71 2071 2071 HOH HOH . N 4 HOH A 72 2072 2072 HOH HOH . N 4 HOH A 73 2073 2073 HOH HOH . N 4 HOH A 74 2074 2074 HOH HOH . N 4 HOH A 75 2075 2075 HOH HOH . N 4 HOH A 76 2076 2076 HOH HOH . N 4 HOH A 77 2077 2077 HOH HOH . N 4 HOH A 78 2078 2078 HOH HOH . O 4 HOH B 1 2001 2001 HOH HOH . O 4 HOH B 2 2002 2002 HOH HOH . O 4 HOH B 3 2003 2003 HOH HOH . O 4 HOH B 4 2004 2004 HOH HOH . O 4 HOH B 5 2005 2005 HOH HOH . O 4 HOH B 6 2006 2006 HOH HOH . O 4 HOH B 7 2007 2007 HOH HOH . O 4 HOH B 8 2008 2008 HOH HOH . O 4 HOH B 9 2009 2009 HOH HOH . O 4 HOH B 10 2010 2010 HOH HOH . O 4 HOH B 11 2011 2011 HOH HOH . O 4 HOH B 12 2012 2012 HOH HOH . O 4 HOH B 13 2013 2013 HOH HOH . O 4 HOH B 14 2014 2014 HOH HOH . O 4 HOH B 15 2015 2015 HOH HOH . O 4 HOH B 16 2016 2016 HOH HOH . O 4 HOH B 17 2017 2017 HOH HOH . O 4 HOH B 18 2018 2018 HOH HOH . O 4 HOH B 19 2019 2019 HOH HOH . O 4 HOH B 20 2020 2020 HOH HOH . O 4 HOH B 21 2021 2021 HOH HOH . O 4 HOH B 22 2022 2022 HOH HOH . O 4 HOH B 23 2023 2023 HOH HOH . O 4 HOH B 24 2024 2024 HOH HOH . O 4 HOH B 25 2025 2025 HOH HOH . O 4 HOH B 26 2026 2026 HOH HOH . O 4 HOH B 27 2027 2027 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . M 2 1.555 138.631 -65.692 1 113.14 ? C1 NAG 1177 B 1 HETATM 2 C C2 NAG . . . M 2 0.115 138.121 -65.709 1 115.24 ? C2 NAG 1177 B 1 HETATM 3 C C3 NAG . . . M 2 -0.509 138.333 -64.335 1 117.27 ? C3 NAG 1177 B 1 HETATM 4 C C4 NAG . . . M 2 0.24 137.484 -63.316 1 118.17 ? C4 NAG 1177 B 1 HETATM 5 C C5 NAG . . . M 2 1.75 137.708 -63.421 1 117.89 ? C5 NAG 1177 B 1 HETATM 6 C C6 NAG . . . M 2 2.53 136.623 -62.711 1 119.08 ? C6 NAG 1177 B 1 HETATM 7 C C7 NAG . . . M 2 -1.02 139.602 -67.361 1 112.4 ? C7 NAG 1177 B 1 HETATM 8 C C8 NAG . . . M 2 -1.554 139.555 -68.761 1 111.18 ? C8 NAG 1177 B 1 HETATM 9 N N2 NAG . . . M 2 -0.827 138.406 -66.782 1 114.69 ? N2 NAG 1177 B 1 HETATM 10 O O3 NAG . . . M 2 -1.885 137.968 -64.35 1 118.2 ? O3 NAG 1177 B 1 HETATM 11 O O4 NAG . . . M 2 -0.219 137.767 -61.999 1 118.82 ? O4 NAG 1177 B 1 HETATM 12 O O5 NAG . . . M 2 2.185 137.692 -64.799 1 115.79 ? O5 NAG 1177 B 1 HETATM 13 O O6 NAG . . . M 2 3.931 136.842 -62.753 1 119.48 ? O6 NAG 1177 B 1 HETATM 14 O O7 NAG . . . M 2 -0.781 140.663 -66.788 1 110.72 ? O7 NAG 1177 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #