data_5FN8
#
_model_server_result.job_id            edwFObdUbn9S7V-kxx3vKw 
_model_server_result.datetime_utc      '2024-10-13 00:18:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5fn8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":1189}' 
#
_entry.id    5FN8 
#
_exptl.entry_id    5FN8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5FN8 
_cell.length_a            84.41 
_cell.length_b            131.16 
_cell.length_c            141.31 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5FN8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 software_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
B,G,H,I,K 1 1,2 
A,C,D,E,F,J 2 1,3 
A,C,D,E,F,J 3 1 
B,G,H,I,K 4 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 0 0 141.31 
3 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 84.41 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 13 A CYS 15 1_555 A SG CYS 89 A CYS 91 2_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.763 ? 
disulf ? disulf2 A SG CYS 38 A CYS 40 1_555 A SG CYS 47 A CYS 49 2_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.506 ? 
disulf ? disulf3 A SG CYS 118 A CYS 120 1_555 A SG CYS 150 A CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
disulf ? disulf4 B SG CYS 13 B CYS 15 1_555 B SG CYS 89 B CYS 91 3_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.761 ? 
disulf ? disulf5 B SG CYS 38 B CYS 40 1_555 B SG CYS 47 B CYS 49 3_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.596 ? 
disulf ? disulf6 B SG CYS 118 B CYS 120 1_555 B SG CYS 150 B CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
covale ? covale1 A ND2 ASN 18 A ASN 20 1_555 D C1 NAG . A NAG 1189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? 
covale ? covale2 A ND2 ASN 115 A ASN 117 1_555 E C1 NAG . A NAG 1190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? 
covale ? covale3 A ND2 ASN 146 A ASN 148 1_555 C C1 NAG . A NAG 1188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? 
covale ? covale4 B ND2 ASN 18 B ASN 20 1_555 H C1 NAG . B NAG 1189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? 
covale ? covale5 B ND2 ASN 115 B ASN 117 1_555 I C1 NAG . B NAG 1190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? 
covale ? covale6 B ND2 ASN 146 B ASN 148 1_555 G C1 NAG . B NAG 1188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     5FN8 
_atom_sites.fract_transf_matrix[1][1]    0.011847 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007624 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007077 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAG A 1 1188 1188 NAG NAG . 
D 2 NAG A 1 1189 1189 NAG NAG . 
E 2 NAG A 1 1190 1190 NAG NAG . 
F 3 FLC A 1 1191 1191 FLC FLC . 
G 2 NAG B 1 1188 1188 NAG NAG . 
H 2 NAG B 1 1189 1189 NAG NAG . 
I 2 NAG B 1 1190 1190 NAG NAG . 
J 4 HOH A 1 2001 2001 HOH HOH . 
J 4 HOH A 2 2002 2002 HOH HOH . 
J 4 HOH A 3 2003 2003 HOH HOH . 
J 4 HOH A 4 2004 2004 HOH HOH . 
J 4 HOH A 5 2005 2005 HOH HOH . 
J 4 HOH A 6 2006 2006 HOH HOH . 
J 4 HOH A 7 2007 2007 HOH HOH . 
J 4 HOH A 8 2008 2008 HOH HOH . 
J 4 HOH A 9 2009 2009 HOH HOH . 
J 4 HOH A 10 2010 2010 HOH HOH . 
J 4 HOH A 11 2011 2011 HOH HOH . 
J 4 HOH A 12 2012 2012 HOH HOH . 
J 4 HOH A 13 2013 2013 HOH HOH . 
J 4 HOH A 14 2014 2014 HOH HOH . 
J 4 HOH A 15 2015 2015 HOH HOH . 
J 4 HOH A 16 2016 2016 HOH HOH . 
J 4 HOH A 17 2017 2017 HOH HOH . 
J 4 HOH A 18 2018 2018 HOH HOH . 
J 4 HOH A 19 2019 2019 HOH HOH . 
J 4 HOH A 20 2020 2020 HOH HOH . 
J 4 HOH A 21 2021 2021 HOH HOH . 
J 4 HOH A 22 2022 2022 HOH HOH . 
J 4 HOH A 23 2023 2023 HOH HOH . 
J 4 HOH A 24 2024 2024 HOH HOH . 
J 4 HOH A 25 2025 2025 HOH HOH . 
J 4 HOH A 26 2026 2026 HOH HOH . 
J 4 HOH A 27 2027 2027 HOH HOH . 
J 4 HOH A 28 2028 2028 HOH HOH . 
J 4 HOH A 29 2029 2029 HOH HOH . 
K 4 HOH B 1 2001 2001 HOH HOH . 
K 4 HOH B 2 2002 2002 HOH HOH . 
K 4 HOH B 3 2003 2003 HOH HOH . 
K 4 HOH B 4 2004 2004 HOH HOH . 
K 4 HOH B 5 2005 2005 HOH HOH . 
K 4 HOH B 6 2006 2006 HOH HOH . 
K 4 HOH B 7 2007 2007 HOH HOH . 
K 4 HOH B 8 2008 2008 HOH HOH . 
K 4 HOH B 9 2009 2009 HOH HOH . 
K 4 HOH B 10 2010 2010 HOH HOH . 
K 4 HOH B 11 2011 2011 HOH HOH . 
K 4 HOH B 12 2012 2012 HOH HOH . 
K 4 HOH B 13 2013 2013 HOH HOH . 
K 4 HOH B 14 2014 2014 HOH HOH . 
K 4 HOH B 15 2015 2015 HOH HOH . 
K 4 HOH B 16 2016 2016 HOH HOH . 
K 4 HOH B 17 2017 2017 HOH HOH . 
K 4 HOH B 18 2018 2018 HOH HOH . 
K 4 HOH B 19 2019 2019 HOH HOH . 
K 4 HOH B 20 2020 2020 HOH HOH . 
K 4 HOH B 21 2021 2021 HOH HOH . 
K 4 HOH B 22 2022 2022 HOH HOH . 
K 4 HOH B 23 2023 2023 HOH HOH . 
K 4 HOH B 24 2024 2024 HOH HOH . 
K 4 HOH B 25 2025 2025 HOH HOH . 
K 4 HOH B 26 2026 2026 HOH HOH . 
K 4 HOH B 27 2027 2027 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . H 2 -15.425 21.754 62.988 1 97.01 ? C1 NAG 1189 B 1 
HETATM 2 C C2 NAG . . . H 2 -15.384 20.326 63.534 1 98.41 ? C2 NAG 1189 B 1 
HETATM 3 C C3 NAG . . . H 2 -15.909 19.357 62.473 1 102.95 ? C3 NAG 1189 B 1 
HETATM 4 C C4 NAG . . . H 2 -17.318 19.758 62.042 1 103.94 ? C4 NAG 1189 B 1 
HETATM 5 C C5 NAG . . . H 2 -17.338 21.215 61.583 1 102.28 ? C5 NAG 1189 B 1 
HETATM 6 C C6 NAG . . . H 2 -18.73 21.738 61.306 1 102.19 ? C6 NAG 1189 B 1 
HETATM 7 C C7 NAG . . . H 2 -13.939 19.364 65.303 1 88.13 ? C7 NAG 1189 B 1 
HETATM 8 C C8 NAG . . . H 2 -12.586 18.788 65.603 1 83.18 ? C8 NAG 1189 B 1 
HETATM 9 N N2 NAG . . . H 2 -14.1 19.879 64.057 1 94.81 ? N2 NAG 1189 B 1 
HETATM 10 O O3 NAG . . . H 2 -15.938 18.035 63.003 1 105.84 ? O3 NAG 1189 B 1 
HETATM 11 O O4 NAG . . . H 2 -17.779 18.918 60.988 1 106.07 ? O4 NAG 1189 B 1 
HETATM 12 O O5 NAG . . . H 2 -16.773 22.059 62.601 1 99.19 ? O5 NAG 1189 B 1 
HETATM 13 O O6 NAG . . . H 2 -19.641 21.429 62.354 1 102.92 ? O6 NAG 1189 B 1 
HETATM 14 O O7 NAG . . . H 2 -14.842 19.372 66.141 1 85.51 ? O7 NAG 1189 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#