data_5FN8 # _model_server_result.job_id S24nJpdXO7EMwshFRibA7w _model_server_result.datetime_utc '2024-10-13 00:17:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5fn8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1191}' # _entry.id 5FN8 # _exptl.entry_id 5FN8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 189.1 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRATE ANION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5FN8 _cell.length_a 84.41 _cell.length_b 131.16 _cell.length_c 141.31 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5FN8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression B,G,H,I,K 1 1,2 A,C,D,E,F,J 2 1,3 A,C,D,E,F,J 3 1 B,G,H,I,K 4 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 0 0 141.31 3 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 84.41 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 13 A CYS 15 1_555 A SG CYS 89 A CYS 91 2_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.763 ? disulf ? disulf2 A SG CYS 38 A CYS 40 1_555 A SG CYS 47 A CYS 49 2_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.506 ? disulf ? disulf3 A SG CYS 118 A CYS 120 1_555 A SG CYS 150 A CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf4 B SG CYS 13 B CYS 15 1_555 B SG CYS 89 B CYS 91 3_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.761 ? disulf ? disulf5 B SG CYS 38 B CYS 40 1_555 B SG CYS 47 B CYS 49 3_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.596 ? disulf ? disulf6 B SG CYS 118 B CYS 120 1_555 B SG CYS 150 B CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? covale ? covale1 A ND2 ASN 18 A ASN 20 1_555 D C1 NAG . A NAG 1189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale2 A ND2 ASN 115 A ASN 117 1_555 E C1 NAG . A NAG 1190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale3 A ND2 ASN 146 A ASN 148 1_555 C C1 NAG . A NAG 1188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale4 B ND2 ASN 18 B ASN 20 1_555 H C1 NAG . B NAG 1189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale5 B ND2 ASN 115 B ASN 117 1_555 I C1 NAG . B NAG 1190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale6 B ND2 ASN 146 B ASN 148 1_555 G C1 NAG . B NAG 1188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? # _chem_comp.formula 'C6 H5 O7 -3' _chem_comp.formula_weight 189.1 _chem_comp.id FLC _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRATE ANION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5FN8 _atom_sites.fract_transf_matrix[1][1] 0.011847 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007624 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007077 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAG A 1 1188 1188 NAG NAG . D 2 NAG A 1 1189 1189 NAG NAG . E 2 NAG A 1 1190 1190 NAG NAG . F 3 FLC A 1 1191 1191 FLC FLC . G 2 NAG B 1 1188 1188 NAG NAG . H 2 NAG B 1 1189 1189 NAG NAG . I 2 NAG B 1 1190 1190 NAG NAG . J 4 HOH A 1 2001 2001 HOH HOH . J 4 HOH A 2 2002 2002 HOH HOH . J 4 HOH A 3 2003 2003 HOH HOH . J 4 HOH A 4 2004 2004 HOH HOH . J 4 HOH A 5 2005 2005 HOH HOH . J 4 HOH A 6 2006 2006 HOH HOH . J 4 HOH A 7 2007 2007 HOH HOH . J 4 HOH A 8 2008 2008 HOH HOH . J 4 HOH A 9 2009 2009 HOH HOH . J 4 HOH A 10 2010 2010 HOH HOH . J 4 HOH A 11 2011 2011 HOH HOH . J 4 HOH A 12 2012 2012 HOH HOH . J 4 HOH A 13 2013 2013 HOH HOH . J 4 HOH A 14 2014 2014 HOH HOH . J 4 HOH A 15 2015 2015 HOH HOH . J 4 HOH A 16 2016 2016 HOH HOH . J 4 HOH A 17 2017 2017 HOH HOH . J 4 HOH A 18 2018 2018 HOH HOH . J 4 HOH A 19 2019 2019 HOH HOH . J 4 HOH A 20 2020 2020 HOH HOH . J 4 HOH A 21 2021 2021 HOH HOH . J 4 HOH A 22 2022 2022 HOH HOH . J 4 HOH A 23 2023 2023 HOH HOH . J 4 HOH A 24 2024 2024 HOH HOH . J 4 HOH A 25 2025 2025 HOH HOH . J 4 HOH A 26 2026 2026 HOH HOH . J 4 HOH A 27 2027 2027 HOH HOH . J 4 HOH A 28 2028 2028 HOH HOH . J 4 HOH A 29 2029 2029 HOH HOH . K 4 HOH B 1 2001 2001 HOH HOH . K 4 HOH B 2 2002 2002 HOH HOH . K 4 HOH B 3 2003 2003 HOH HOH . K 4 HOH B 4 2004 2004 HOH HOH . K 4 HOH B 5 2005 2005 HOH HOH . K 4 HOH B 6 2006 2006 HOH HOH . K 4 HOH B 7 2007 2007 HOH HOH . K 4 HOH B 8 2008 2008 HOH HOH . K 4 HOH B 9 2009 2009 HOH HOH . K 4 HOH B 10 2010 2010 HOH HOH . K 4 HOH B 11 2011 2011 HOH HOH . K 4 HOH B 12 2012 2012 HOH HOH . K 4 HOH B 13 2013 2013 HOH HOH . K 4 HOH B 14 2014 2014 HOH HOH . K 4 HOH B 15 2015 2015 HOH HOH . K 4 HOH B 16 2016 2016 HOH HOH . K 4 HOH B 17 2017 2017 HOH HOH . K 4 HOH B 18 2018 2018 HOH HOH . K 4 HOH B 19 2019 2019 HOH HOH . K 4 HOH B 20 2020 2020 HOH HOH . K 4 HOH B 21 2021 2021 HOH HOH . K 4 HOH B 22 2022 2022 HOH HOH . K 4 HOH B 23 2023 2023 HOH HOH . K 4 HOH B 24 2024 2024 HOH HOH . K 4 HOH B 25 2025 2025 HOH HOH . K 4 HOH B 26 2026 2026 HOH HOH . K 4 HOH B 27 2027 2027 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAC FLC . . . F 3 29.902 19.419 50.943 1 125.62 ? CAC FLC 1191 A 1 HETATM 2 C CA FLC . . . F 3 28.526 18.783 50.976 1 122.81 ? CA FLC 1191 A 1 HETATM 3 C CB FLC . . . F 3 27.452 19.32 50.027 1 123.98 ? CB FLC 1191 A 1 HETATM 4 C CBC FLC . . . F 3 26.298 19.822 50.883 1 129.28 ? CBC FLC 1191 A 1 HETATM 5 C CG FLC . . . F 3 26.982 18.179 49.144 1 121.06 ? CG FLC 1191 A 1 HETATM 6 C CGC FLC . . . F 3 25.962 18.494 48.064 1 119.8 ? CGC FLC 1191 A 1 HETATM 7 O OA1 FLC . . . F 3 30.479 19.609 49.846 1 128.39 ? OA1 FLC 1191 A 1 HETATM 8 O OA2 FLC . . . F 3 30.436 19.71 52.038 1 124.86 ? OA2 FLC 1191 A 1 HETATM 9 O OB1 FLC . . . F 3 25.778 19.059 51.747 1 129.91 ? OB1 FLC 1191 A 1 HETATM 10 O OB2 FLC . . . F 3 25.893 21 50.71 1 131.14 ? OB2 FLC 1191 A 1 HETATM 11 O OG1 FLC . . . F 3 24.752 18.554 48.383 1 120.19 ? OG1 FLC 1191 A 1 HETATM 12 O OG2 FLC . . . F 3 26.355 18.623 46.879 1 118.07 ? OG2 FLC 1191 A 1 HETATM 13 O OHB FLC . . . F 3 27.973 20.332 49.149 1 124.88 ? OHB FLC 1191 A 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 13 #