data_5FNV
#
_model_server_result.job_id            xt3sJkM8PK1P0GduNrz8eQ 
_model_server_result.datetime_utc      '2024-11-29 00:41:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5fnv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":1442}' 
#
_entry.id    5FNV 
#
_exptl.entry_id    5FNV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5FNV 
_cell.length_a            106.16 
_cell.length_b            157.2 
_cell.length_c            181.68 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5FNV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 I N N 
? 7 L N N 
? 7 Q N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 C SG CYS 316 C CYS 316 1_555 R C03 X3H . C X3H 1443 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.821 ? 
metalc ? metalc1 A OD2 ASP 39 A ASP 39 1_555 I CA CA . A CA 1440 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? 
metalc ? metalc2 A OD1 ASP 39 A ASP 39 1_555 I CA CA . A CA 1440 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? 
metalc ? metalc3 A OG1 THR 41 A THR 41 1_555 I CA CA . A CA 1440 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? 
metalc ? metalc4 A O THR 41 A THR 41 1_555 I CA CA . A CA 1440 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? 
metalc ? metalc5 A O GLY 44 A GLY 44 1_555 I CA CA . A CA 1440 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? 
metalc ? metalc6 A OE1 GLU 55 A GLU 55 1_555 I CA CA . A CA 1440 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.859 ? 
metalc ? metalc7 A OE2 GLU 55 A GLU 55 1_555 I CA CA . A CA 1440 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? 
metalc ? metalc8 G O1G GTP . A GTP 1438 1_555 H MG MG . A MG 1439 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.92 ? 
metalc ? metalc9 G O2B GTP . A GTP 1438 1_555 H MG MG . A MG 1439 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.942 ? 
metalc ? metalc10 H MG MG . A MG 1439 1_555 V O HOH . A HOH 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? 
metalc ? metalc11 H MG MG . A MG 1439 1_555 V O HOH . A HOH 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
metalc ? metalc12 H MG MG . A MG 1439 1_555 V O HOH . A HOH 2005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? 
metalc ? metalc13 H MG MG . A MG 1439 1_555 V O HOH . A HOH 2006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? 
metalc ? metalc14 B OE1 GLN 11 B GLN 11 1_555 K MG MG . B MG 1430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? 
metalc ? metalc15 B OE1 GLU 111 B GLU 111 1_555 L CA CA . B CA 1431 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? 
metalc ? metalc16 J O1A GDP . B GDP 1429 1_555 K MG MG . B MG 1430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.94 ? 
metalc ? metalc17 K MG MG . B MG 1430 1_555 W O HOH . B HOH 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? 
metalc ? metalc18 C OD2 ASP 39 C ASP 39 1_555 Q CA CA . C CA 1442 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? 
metalc ? metalc19 C OD1 ASP 39 C ASP 39 1_555 Q CA CA . C CA 1442 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? 
metalc ? metalc20 C OG1 THR 41 C THR 41 1_555 Q CA CA . C CA 1442 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? 
metalc ? metalc21 C O THR 41 C THR 41 1_555 Q CA CA . C CA 1442 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? 
metalc ? metalc22 C O GLY 44 C GLY 44 1_555 Q CA CA . C CA 1442 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? 
metalc ? metalc23 C OE1 GLU 55 C GLU 55 1_555 Q CA CA . C CA 1442 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.876 ? 
metalc ? metalc24 C OE2 GLU 55 C GLU 55 1_555 Q CA CA . C CA 1442 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? 
metalc ? metalc25 O O1B GTP . C GTP 1440 1_555 P MG MG . C MG 1441 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.934 ? 
metalc ? metalc26 O O1G GTP . C GTP 1440 1_555 P MG MG . C MG 1441 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.903 ? 
metalc ? metalc27 P MG MG . C MG 1441 1_555 X O HOH . C HOH 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
metalc ? metalc28 P MG MG . C MG 1441 1_555 X O HOH . C HOH 2005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? 
metalc ? metalc29 P MG MG . C MG 1441 1_555 X O HOH . C HOH 2006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
metalc ? metalc30 P MG MG . C MG 1441 1_555 X O HOH . C HOH 2008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.952 ? 
metalc ? metalc31 S O1B GTP . D GTP 1431 1_555 T MG MG . D MG 1432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.889 ? 
metalc ? metalc32 S O3G GTP . D GTP 1431 1_555 T MG MG . D MG 1432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.928 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     5FNV 
_atom_sites.fract_transf_matrix[1][1]    0.00942 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006361 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005504 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 5 GTP A 1 1438 1438 GTP GTP . 
H 6 MG A 1 1439 1439 MG MG . 
I 7 CA A 1 1440 1440 CA CA . 
J 8 GDP B 1 1429 1429 GDP GDP . 
K 6 MG B 1 1430 1430 MG MG . 
L 7 CA B 1 1431 1431 CA CA . 
M 9 MES B 1 1432 1432 MES MES . 
N 9 MES B 1 1433 1433 MES MES . 
O 5 GTP C 1 1440 1440 GTP GTP . 
P 6 MG C 1 1441 1441 MG MG . 
Q 7 CA C 1 1442 1442 CA CA . 
R 10 X3H C 1 1443 1443 X3H X3H . 
S 5 GTP D 1 1431 1431 GTP GTP . 
T 6 MG D 1 1432 1432 MG MG . 
U 11 ACP F 1 1385 1385 ACP ACP . 
V 12 HOH A 1 2001 2001 HOH HOH . 
V 12 HOH A 2 2002 2002 HOH HOH . 
V 12 HOH A 3 2003 2003 HOH HOH . 
V 12 HOH A 4 2004 2004 HOH HOH . 
V 12 HOH A 5 2005 2005 HOH HOH . 
V 12 HOH A 6 2006 2006 HOH HOH . 
V 12 HOH A 7 2007 2007 HOH HOH . 
V 12 HOH A 8 2008 2008 HOH HOH . 
V 12 HOH A 9 2009 2009 HOH HOH . 
V 12 HOH A 10 2010 2010 HOH HOH . 
V 12 HOH A 11 2011 2011 HOH HOH . 
V 12 HOH A 12 2012 2012 HOH HOH . 
V 12 HOH A 13 2013 2013 HOH HOH . 
V 12 HOH A 14 2014 2014 HOH HOH . 
V 12 HOH A 15 2015 2015 HOH HOH . 
V 12 HOH A 16 2016 2016 HOH HOH . 
W 12 HOH B 1 2001 2001 HOH HOH . 
W 12 HOH B 2 2002 2002 HOH HOH . 
W 12 HOH B 3 2003 2003 HOH HOH . 
W 12 HOH B 4 2004 2004 HOH HOH . 
W 12 HOH B 5 2005 2005 HOH HOH . 
W 12 HOH B 6 2006 2006 HOH HOH . 
W 12 HOH B 7 2007 2007 HOH HOH . 
W 12 HOH B 8 2008 2008 HOH HOH . 
W 12 HOH B 9 2009 2009 HOH HOH . 
W 12 HOH B 10 2010 2010 HOH HOH . 
W 12 HOH B 11 2011 2011 HOH HOH . 
W 12 HOH B 12 2012 2012 HOH HOH . 
W 12 HOH B 13 2013 2013 HOH HOH . 
W 12 HOH B 14 2014 2014 HOH HOH . 
W 12 HOH B 15 2015 2015 HOH HOH . 
W 12 HOH B 16 2016 2016 HOH HOH . 
X 12 HOH C 1 2001 2001 HOH HOH . 
X 12 HOH C 2 2002 2002 HOH HOH . 
X 12 HOH C 3 2003 2003 HOH HOH . 
X 12 HOH C 4 2004 2004 HOH HOH . 
X 12 HOH C 5 2005 2005 HOH HOH . 
X 12 HOH C 6 2006 2006 HOH HOH . 
X 12 HOH C 7 2007 2007 HOH HOH . 
X 12 HOH C 8 2008 2008 HOH HOH . 
X 12 HOH C 9 2009 2009 HOH HOH . 
X 12 HOH C 10 2010 2010 HOH HOH . 
X 12 HOH C 11 2011 2011 HOH HOH . 
X 12 HOH C 12 2012 2012 HOH HOH . 
X 12 HOH C 13 2013 2013 HOH HOH . 
X 12 HOH C 14 2014 2014 HOH HOH . 
X 12 HOH C 15 2015 2015 HOH HOH . 
X 12 HOH C 16 2016 2016 HOH HOH . 
X 12 HOH C 17 2017 2017 HOH HOH . 
X 12 HOH C 18 2018 2018 HOH HOH . 
X 12 HOH C 19 2019 2019 HOH HOH . 
X 12 HOH C 20 2020 2020 HOH HOH . 
X 12 HOH C 21 2021 2021 HOH HOH . 
X 12 HOH C 22 2022 2022 HOH HOH . 
X 12 HOH C 23 2023 2023 HOH HOH . 
X 12 HOH C 24 2024 2024 HOH HOH . 
X 12 HOH C 25 2025 2025 HOH HOH . 
X 12 HOH C 26 2026 2026 HOH HOH . 
X 12 HOH C 27 2027 2027 HOH HOH . 
X 12 HOH C 28 2028 2028 HOH HOH . 
X 12 HOH C 29 2029 2029 HOH HOH . 
X 12 HOH C 30 2030 2030 HOH HOH . 
X 12 HOH C 31 2031 2031 HOH HOH . 
Y 12 HOH D 1 2001 2001 HOH HOH . 
Y 12 HOH D 2 2002 2002 HOH HOH . 
Y 12 HOH D 3 2003 2003 HOH HOH . 
Z 12 HOH F 1 2001 2001 HOH HOH . 
Z 12 HOH F 2 2002 2002 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         Q 
_atom_site.label_entity_id       7 
_atom_site.Cartn_x               14.189 
_atom_site.Cartn_y               55.397 
_atom_site.Cartn_z               -11.518 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        83.68 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           1442 
_atom_site.auth_asym_id          C 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              40 
_model_server_stats.parse_time_ms           70 
_model_server_stats.create_model_time_ms    47 
_model_server_stats.query_time_ms           370 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           1 
#