data_5FO9 # _model_server_result.job_id MfZ5R1nTxq_7VkzpR9Fmxg _model_server_result.datetime_utc '2024-11-28 23:39:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5fo9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1063}' # _entry.id 5FO9 # _exptl.entry_id 5FO9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 82.74 _cell.angle_beta 71.77 _cell.angle_gamma 80.95 _cell.entry_id 5FO9 _cell.length_a 104.32 _cell.length_b 113.71 _cell.length_c 138.52 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5FO9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 software_defined_assembly 1 PQS trimeric 3 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression D,E,F,H 1 1 A,B,C,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 537 A CYS 559 1_555 B SG CYS 68 B CYS 816 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 A SG CYS 605 A CYS 627 1_555 A SG CYS 640 A CYS 662 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 B SG CYS 125 B CYS 873 1_555 B SG CYS 765 B CYS 1513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 B SG CYS 353 B CYS 1101 1_555 B SG CYS 410 B CYS 1158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 B SG CYS 610 B CYS 1358 1_555 B SG CYS 741 B CYS 1489 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf6 B SG CYS 641 B CYS 1389 1_555 B SG CYS 710 B CYS 1458 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 B SG CYS 758 B CYS 1506 1_555 B SG CYS 763 B CYS 1511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf8 B SG CYS 770 B CYS 1518 1_555 B SG CYS 842 B CYS 1590 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf9 B SG CYS 789 B CYS 1537 1_555 B SG CYS 913 B CYS 1661 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf10 B SG CYS 889 B CYS 1637 1_555 B SG CYS 898 B CYS 1646 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf11 C SG CYS 3 C CYS 943 1_555 C SG CYS 46 C CYS 986 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf12 C SG CYS 33 C CYS 973 1_555 C SG CYS 59 C CYS 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf13 C SG CYS 64 C CYS 1004 1_555 C SG CYS 105 C CYS 1045 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf14 C SG CYS 91 C CYS 1031 1_555 C SG CYS 121 C CYS 1061 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf15 C SG CYS 126 C CYS 1066 1_555 C SG CYS 175 C CYS 1115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf16 C SG CYS 155 C CYS 1095 1_555 C SG CYS 192 C CYS 1132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf17 D SG CYS 537 D CYS 559 1_555 E SG CYS 68 E CYS 816 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf18 D SG CYS 605 D CYS 627 1_555 D SG CYS 640 D CYS 662 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf19 E SG CYS 125 E CYS 873 1_555 E SG CYS 765 E CYS 1513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf20 E SG CYS 353 E CYS 1101 1_555 E SG CYS 410 E CYS 1158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf21 E SG CYS 610 E CYS 1358 1_555 E SG CYS 741 E CYS 1489 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf22 E SG CYS 641 E CYS 1389 1_555 E SG CYS 710 E CYS 1458 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf23 E SG CYS 758 E CYS 1506 1_555 E SG CYS 763 E CYS 1511 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf24 E SG CYS 770 E CYS 1518 1_555 E SG CYS 842 E CYS 1590 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.679 ? disulf ? disulf25 E SG CYS 789 E CYS 1537 1_555 E SG CYS 913 E CYS 1661 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf26 E SG CYS 889 E CYS 1637 1_555 E SG CYS 898 E CYS 1646 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf27 F SG CYS 3 F CYS 943 1_555 F SG CYS 46 F CYS 986 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf28 F SG CYS 33 F CYS 973 1_555 F SG CYS 59 F CYS 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf29 F SG CYS 64 F CYS 1004 1_555 F SG CYS 105 F CYS 1045 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf30 F SG CYS 91 F CYS 1031 1_555 F SG CYS 121 F CYS 1061 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf31 F SG CYS 126 F CYS 1066 1_555 F SG CYS 175 F CYS 1115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf32 F SG CYS 155 F CYS 1095 1_555 F SG CYS 192 F CYS 1132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 A ND2 ASN 63 A ASN 85 1_555 G C1 NAG . A NAG 1063 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale2 D ND2 ASN 63 D ASN 85 1_555 H C2 NAG . D NAG 1063 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.708 ? covale ? covale3 D ND2 ASN 63 D ASN 85 1_555 H C1 NAG . D NAG 1063 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 235 n n C1 O1 NAG sing 236 n n C1 O5 NAG sing 237 n n C1 H1 NAG sing 238 n n C2 C3 NAG sing 239 n n C2 N2 NAG sing 240 n n C2 H2 NAG sing 241 n n C3 C4 NAG sing 242 n n C3 O3 NAG sing 243 n n C3 H3 NAG sing 244 n n C4 C5 NAG sing 245 n n C4 O4 NAG sing 246 n n C4 H4 NAG sing 247 n n C5 C6 NAG sing 248 n n C5 O5 NAG sing 249 n n C5 H5 NAG sing 250 n n C6 O6 NAG sing 251 n n C6 H61 NAG sing 252 n n C6 H62 NAG sing 253 n n C7 C8 NAG sing 254 n n C7 N2 NAG sing 255 n n C7 O7 NAG doub 256 n n C8 H81 NAG sing 257 n n C8 H82 NAG sing 258 n n C8 H83 NAG sing 259 n n N2 HN2 NAG sing 260 n n O1 HO1 NAG sing 261 n n O3 HO3 NAG sing 262 n n O4 HO4 NAG sing 263 n n O6 HO6 NAG sing 264 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 5FO9 _atom_sites.fract_transf_matrix[1][1] 0.009586 _atom_sites.fract_transf_matrix[1][2] -0.001527 _atom_sites.fract_transf_matrix[1][3] -0.003042 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008905 _atom_sites.fract_transf_matrix[2][3] -0.000735 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007627 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 NAG A 1 1063 1063 NAG NAG . H 4 NAG D 1 1063 1063 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . H 4 26.642 -2.113 19.904 1 126.68 ? C1 NAG 1063 D 1 HETATM 2 C C2 NAG . . . H 4 25.12 -2.007 20.043 1 122.48 ? C2 NAG 1063 D 1 HETATM 3 C C3 NAG . . . H 4 24.62 -2.611 21.354 1 134.74 ? C3 NAG 1063 D 1 HETATM 4 C C4 NAG . . . H 4 25.239 -3.979 21.605 1 142.71 ? C4 NAG 1063 D 1 HETATM 5 C C5 NAG . . . H 4 26.754 -3.898 21.467 1 149.52 ? C5 NAG 1063 D 1 HETATM 6 C C6 NAG . . . H 4 27.392 -5.262 21.713 1 158.79 ? C6 NAG 1063 D 1 HETATM 7 C C7 NAG . . . H 4 23.719 -0.243 19.097 1 93.56 ? C7 NAG 1063 D 1 HETATM 8 C C8 NAG . . . H 4 23.328 1.204 19.126 1 87.13 ? C8 NAG 1063 D 1 HETATM 9 N N2 NAG . . . H 4 24.683 -0.623 19.938 1 106.63 ? N2 NAG 1063 D 1 HETATM 10 O O3 NAG . . . H 4 23.217 -2.741 21.315 1 137.68 ? O3 NAG 1063 D 1 HETATM 11 O O4 NAG . . . H 4 24.894 -4.432 22.896 1 139.17 ? O4 NAG 1063 D 1 HETATM 12 O O5 NAG . . . H 4 27.091 -3.429 20.176 1 139.38 ? O5 NAG 1063 D 1 HETATM 13 O O6 NAG . . . H 4 28.796 -5.133 21.745 1 164.16 ? O6 NAG 1063 D 1 HETATM 14 O O7 NAG . . . H 4 23.162 -1.02 18.323 1 91.41 ? O7 NAG 1063 D 1 # _model_server_stats.io_time_ms 279 _model_server_stats.parse_time_ms 52 _model_server_stats.create_model_time_ms 107 _model_server_stats.query_time_ms 1253 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 14 #