data_5FPG # _model_server_result.job_id YnQnC4n39p03Ybc6YPrTeA _model_server_result.datetime_utc '2024-10-19 16:36:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5fpg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":2163}' # _entry.id 5FPG # _exptl.entry_id 5FPG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 477.514 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-[3-(8-METHYL-4-OXO-3,4-DIHYDROQUINAZOLIN-2- YL)PROPANAMIDO]-N-(QUINOLIN-8-YL)BENZAMIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5FPG _cell.length_a 41.99 _cell.length_b 76.56 _cell.length_c 148.83 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5FPG _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 159 A CYS 1081 1_555 C ZN ZN . A ZN 2162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc2 A ND1 HIS 162 A HIS 1084 1_555 C ZN ZN . A ZN 2162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc3 A SG CYS 167 A CYS 1089 1_555 C ZN ZN . A ZN 2162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc4 A SG CYS 170 A CYS 1092 1_555 C ZN ZN . A ZN 2162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc5 B SG CYS 159 B CYS 1081 1_555 E ZN ZN . B ZN 2162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc6 B ND1 HIS 162 B HIS 1084 1_555 E ZN ZN . B ZN 2162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? metalc ? metalc7 B SG CYS 167 B CYS 1089 1_555 E ZN ZN . B ZN 2162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc8 B SG CYS 170 B CYS 1092 1_555 E ZN ZN . B ZN 2162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? # _chem_comp.formula 'C28 H23 N5 O3' _chem_comp.formula_weight 477.514 _chem_comp.id Q28 _chem_comp.mon_nstd_flag . _chem_comp.name '4-[3-(8-METHYL-4-OXO-3,4-DIHYDROQUINAZOLIN-2- YL)PROPANAMIDO]-N-(QUINOLIN-8-YL)BENZAMIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CBG CBF Q28 sing 277 n y CBG CAX Q28 doub 278 n y CBF CBE Q28 doub 279 n y CBE CBD Q28 sing 280 n y CBD CBC Q28 doub 281 n y CBD CAY Q28 sing 282 n y CBC CBB Q28 sing 283 n y CBB CBA Q28 doub 284 n y CBA NAZ Q28 sing 285 n y NAZ CAY Q28 doub 286 n y CAY CAX Q28 sing 287 n y CAX NAW Q28 sing 288 n n NAW CAU Q28 sing 289 n n CAU OAV Q28 doub 290 n n CAU CAR Q28 sing 291 n n CAR CAS Q28 sing 292 n y CAR CAQ Q28 doub 293 n y CAS CAT Q28 doub 294 n y CAT CAO Q28 sing 295 n y CAQ CAP Q28 sing 296 n y CAP CAO Q28 doub 297 n y CAO NAN Q28 sing 298 n n NAN CAL Q28 sing 299 n n CAL OAM Q28 doub 300 n n CAL CAK Q28 sing 301 n n CAK CAJ Q28 sing 302 n n CAJ CAI Q28 sing 303 n n CAI NAH Q28 doub 304 n n CAI NBH Q28 sing 305 n n NAH CAG Q28 sing 306 n n CAG CAB Q28 sing 307 n y CAG CAF Q28 doub 308 n y CAB CAA Q28 sing 309 n n CAB CAC Q28 doub 310 n y CAC CAD Q28 sing 311 n y CAD CAE Q28 doub 312 n y CAE CAF Q28 sing 313 n y CAF CBI Q28 sing 314 n n CBI OBJ Q28 doub 315 n n CBI NBH Q28 sing 316 n n CBG HBG Q28 sing 317 n n CBF HBF Q28 sing 318 n n CBE HBE Q28 sing 319 n n CBC HBC Q28 sing 320 n n CBB HBB Q28 sing 321 n n CBA HBA Q28 sing 322 n n NAW HAW Q28 sing 323 n n CAS HAS Q28 sing 324 n n CAQ HAQ Q28 sing 325 n n CAT HAT Q28 sing 326 n n CAP HAP Q28 sing 327 n n NAN HAN Q28 sing 328 n n CAK HAK1 Q28 sing 329 n n CAK HAK2 Q28 sing 330 n n CAJ HAJ1 Q28 sing 331 n n CAJ HAJ2 Q28 sing 332 n n NBH HBH Q28 sing 333 n n CAA HAA1 Q28 sing 334 n n CAA HAA2 Q28 sing 335 n n CAA HAA3 Q28 sing 336 n n CAC HAC Q28 sing 337 n n CAD HAD Q28 sing 338 n n CAE HAE Q28 sing 339 n n # _atom_sites.entry_id 5FPG _atom_sites.fract_transf_matrix[1][1] 0.023815 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013062 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006719 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 2162 2162 ZN ZN . D 3 Q28 A 1 2163 2163 Q28 Q28 . E 2 ZN B 1 2162 2162 ZN ZN . F 3 Q28 B 1 2163 2163 Q28 Q28 . G 4 HOH A 1 2001 2001 HOH HOH . G 4 HOH A 2 2002 2002 HOH HOH . G 4 HOH A 3 2003 2003 HOH HOH . G 4 HOH A 4 2004 2004 HOH HOH . G 4 HOH A 5 2005 2005 HOH HOH . G 4 HOH A 6 2006 2006 HOH HOH . G 4 HOH A 7 2007 2007 HOH HOH . G 4 HOH A 8 2008 2008 HOH HOH . G 4 HOH A 9 2009 2009 HOH HOH . G 4 HOH A 10 2010 2010 HOH HOH . G 4 HOH A 11 2011 2011 HOH HOH . G 4 HOH A 12 2012 2012 HOH HOH . G 4 HOH A 13 2013 2013 HOH HOH . H 4 HOH B 1 2001 2001 HOH HOH . H 4 HOH B 2 2002 2002 HOH HOH . H 4 HOH B 3 2003 2003 HOH HOH . H 4 HOH B 4 2004 2004 HOH HOH . H 4 HOH B 5 2005 2005 HOH HOH . H 4 HOH B 6 2006 2006 HOH HOH . H 4 HOH B 7 2007 2007 HOH HOH . H 4 HOH B 8 2008 2008 HOH HOH . H 4 HOH B 9 2009 2009 HOH HOH . H 4 HOH B 10 2010 2010 HOH HOH . H 4 HOH B 11 2011 2011 HOH HOH . H 4 HOH B 12 2012 2012 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CBG Q28 . . . D 3 -33.346 1.756 -27.498 1 38.53 ? CBG Q28 2163 A 1 HETATM 2 C CBF Q28 . . . D 3 -34.474 2.561 -27.617 1 35.61 ? CBF Q28 2163 A 1 HETATM 3 C CBE Q28 . . . D 3 -35.614 2.087 -28.252 1 34.53 ? CBE Q28 2163 A 1 HETATM 4 C CBD Q28 . . . D 3 -35.632 0.802 -28.773 1 39.18 ? CBD Q28 2163 A 1 HETATM 5 C CBC Q28 . . . D 3 -36.774 0.331 -29.409 1 35.01 ? CBC Q28 2163 A 1 HETATM 6 C CBB Q28 . . . D 3 -36.792 -0.956 -29.929 1 32.72 ? CBB Q28 2163 A 1 HETATM 7 C CBA Q28 . . . D 3 -35.664 -1.755 -29.806 1 38.24 ? CBA Q28 2163 A 1 HETATM 8 N NAZ Q28 . . . D 3 -34.524 -1.254 -29.161 1 39.51 ? NAZ Q28 2163 A 1 HETATM 9 C CAY Q28 . . . D 3 -34.51 -0.009 -28.659 1 39.69 ? CAY Q28 2163 A 1 HETATM 10 C CAX Q28 . . . D 3 -33.365 0.459 -28.019 1 39.88 ? CAX Q28 2163 A 1 HETATM 11 N NAW Q28 . . . D 3 -32.374 -0.45 -27.999 1 40.04 ? NAW Q28 2163 A 1 HETATM 12 C CAU Q28 . . . D 3 -31.233 -0.296 -27.272 1 38.03 ? CAU Q28 2163 A 1 HETATM 13 O OAV Q28 . . . D 3 -30.957 0.665 -26.558 1 37.99 ? OAV Q28 2163 A 1 HETATM 14 C CAR Q28 . . . D 3 -30.317 -1.351 -27.36 1 33.88 ? CAR Q28 2163 A 1 HETATM 15 C CAS Q28 . . . D 3 -29.341 -1.504 -26.378 1 38.37 ? CAS Q28 2163 A 1 HETATM 16 C CAT Q28 . . . D 3 -28.42 -2.547 -26.444 1 38.15 ? CAT Q28 2163 A 1 HETATM 17 C CAQ Q28 . . . D 3 -30.35 -2.256 -28.413 1 36.54 ? CAQ Q28 2163 A 1 HETATM 18 C CAP Q28 . . . D 3 -29.43 -3.294 -28.481 1 39.94 ? CAP Q28 2163 A 1 HETATM 19 C CAO Q28 . . . D 3 -28.455 -3.444 -27.507 1 34.12 ? CAO Q28 2163 A 1 HETATM 20 N NAN Q28 . . . D 3 -27.617 -4.477 -27.645 1 36.75 ? NAN Q28 2163 A 1 HETATM 21 C CAL Q28 . . . D 3 -26.328 -4.391 -27.269 1 37 ? CAL Q28 2163 A 1 HETATM 22 O OAM Q28 . . . D 3 -25.777 -3.414 -26.765 1 43.75 ? OAM Q28 2163 A 1 HETATM 23 C CAK Q28 . . . D 3 -25.541 -5.67 -27.536 1 33.2 ? CAK Q28 2163 A 1 HETATM 24 C CAJ Q28 . . . D 3 -24.966 -5.627 -28.935 1 35.98 ? CAJ Q28 2163 A 1 HETATM 25 C CAI Q28 . . . D 3 -23.64 -5.207 -28.817 1 37.26 ? CAI Q28 2163 A 1 HETATM 26 N NAH Q28 . . . D 3 -22.785 -5.928 -28.075 1 36.97 ? NAH Q28 2163 A 1 HETATM 27 C CAG Q28 . . . D 3 -21.499 -5.581 -27.935 1 34.42 ? CAG Q28 2163 A 1 HETATM 28 C CAB Q28 . . . D 3 -20.66 -6.357 -27.143 1 31.78 ? CAB Q28 2163 A 1 HETATM 29 C CAA Q28 . . . D 3 -21.141 -7.491 -26.489 1 35.74 ? CAA Q28 2163 A 1 HETATM 30 C CAC Q28 . . . D 3 -19.325 -5.998 -26.998 1 29.74 ? CAC Q28 2163 A 1 HETATM 31 C CAD Q28 . . . D 3 -18.826 -4.871 -27.641 1 35.71 ? CAD Q28 2163 A 1 HETATM 32 C CAE Q28 . . . D 3 -19.666 -4.096 -28.433 1 38.05 ? CAE Q28 2163 A 1 HETATM 33 C CAF Q28 . . . D 3 -21.002 -4.453 -28.58 1 35.33 ? CAF Q28 2163 A 1 HETATM 34 C CBI Q28 . . . D 3 -21.845 -3.683 -29.369 1 33.45 ? CBI Q28 2163 A 1 HETATM 35 O OBJ Q28 . . . D 3 -21.428 -2.68 -29.948 1 30.27 ? OBJ Q28 2163 A 1 HETATM 36 N NBH Q28 . . . D 3 -23.185 -4.066 -29.497 1 37.64 ? NBH Q28 2163 A 1 HETATM 37 H HBG Q28 . . . D 3 -32.454 2.133 -26.997 1 46.24 ? HBG Q28 2163 A 1 HETATM 38 H HBF Q28 . . . D 3 -34.463 3.572 -27.209 1 42.73 ? HBF Q28 2163 A 1 HETATM 39 H HBE Q28 . . . D 3 -36.494 2.725 -28.342 1 41.44 ? HBE Q28 2163 A 1 HETATM 40 H HBC Q28 . . . D 3 -37.653 0.969 -29.497 1 42.01 ? HBC Q28 2163 A 1 HETATM 41 H HBB Q28 . . . D 3 -37.683 -1.335 -30.429 1 39.26 ? HBB Q28 2163 A 1 HETATM 42 H HBA Q28 . . . D 3 -35.663 -2.767 -30.211 1 45.89 ? HBA Q28 2163 A 1 HETATM 43 H HAW Q28 . . . D 3 -32.485 -1.286 -28.536 1 48.05 ? HAW Q28 2163 A 1 HETATM 44 H HAS Q28 . . . D 3 -29.301 -0.802 -25.545 1 46.04 ? HAS Q28 2163 A 1 HETATM 45 H HAQ Q28 . . . D 3 -31.105 -2.151 -29.192 1 43.84 ? HAQ Q28 2163 A 1 HETATM 46 H HAT Q28 . . . D 3 -27.662 -2.653 -25.668 1 45.78 ? HAT Q28 2163 A 1 HETATM 47 H HAP Q28 . . . D 3 -29.472 -3.995 -29.314 1 47.93 ? HAP Q28 2163 A 1 HETATM 48 H HAN Q28 . . . D 3 -27.949 -5.323 -28.062 1 44.09 ? HAN Q28 2163 A 1 HETATM 49 H HBH Q28 . . . D 3 -23.813 -3.528 -30.059 1 45.17 ? HBH Q28 2163 A 1 HETATM 50 H HAA1 Q28 . . . D 3 -20.579 -7.646 -25.568 1 42.89 ? HAA1 Q28 2163 A 1 HETATM 51 H HAA2 Q28 . . . D 3 -21.025 -8.361 -27.136 1 42.89 ? HAA2 Q28 2163 A 1 HETATM 52 H HAA3 Q28 . . . D 3 -22.196 -7.354 -26.252 1 42.89 ? HAA3 Q28 2163 A 1 HETATM 53 H HAC Q28 . . . D 3 -18.665 -6.605 -26.378 1 35.69 ? HAC Q28 2163 A 1 HETATM 54 H HAD Q28 . . . D 3 -17.778 -4.595 -27.524 1 42.85 ? HAD Q28 2163 A 1 HETATM 55 H HAE Q28 . . . D 3 -19.278 -3.211 -28.938 1 45.66 ? HAE Q28 2163 A 1 HETATM 56 H HAL Q28 . . . D 3 -24.74 -5.786 -26.806 1 39.84 ? HAL Q28 2163 A 1 HETATM 57 H HAM Q28 . . . D 3 -26.225 -6.516 -27.461 1 39.84 ? HAM Q28 2163 A 1 HETATM 58 H HAJ Q28 . . . D 3 -25.358 -4.882 -29.563 1 43.17 ? HAJ Q28 2163 A 1 HETATM 59 H HAK Q28 . . . D 3 -24.806 -6.565 -29.378 1 43.17 ? HAK Q28 2163 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 59 #