data_5FPQ # _model_server_result.job_id xykbntRckYUNQ1UxAgNyHw _model_server_result.datetime_utc '2024-10-13 09:16:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5fpq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1543}' # _entry.id 5FPQ # _exptl.entry_id 5FPQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.278 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PENTAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5FPQ _cell.length_a 104.869 _cell.length_b 104.869 _cell.length_c 323.25 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5FPQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D 1 1 B,E 1 2 B,E 2 1 A,C,D 2 3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_545 y,x-1,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 52.4345 -90.819218 0 3 'crystal symmetry operation' 4_655 y+1,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 104.869 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 68 A CYS 69 1_555 A SG CYS 95 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? disulf ? disulf2 A SG CYS 256 A CYS 257 1_555 A SG CYS 271 A CYS 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf3 A SG CYS 408 A CYS 409 1_555 A SG CYS 528 A CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf4 B SG CYS 68 B CYS 69 1_555 B SG CYS 95 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? disulf ? disulf5 B SG CYS 256 B CYS 257 1_555 B SG CYS 271 B CYS 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? disulf ? disulf6 B SG CYS 408 B CYS 409 1_555 B SG CYS 528 B CYS 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? covale ? covale1 A C GLU 201 A GLU 202 1_555 A N SGB 202 A SGB 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale2 A C SGB 202 A SGB 203 1_555 A N ALA 203 A ALA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale3 B C GLU 201 B GLU 202 1_555 B N SGB 202 B SGB 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale4 B C SGB 202 B SGB 203 1_555 B N ALA 203 B ALA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? # _chem_comp.formula 'C10 H22 O6' _chem_comp.formula_weight 238.278 _chem_comp.id 1PE _chem_comp.mon_nstd_flag . _chem_comp.name 'PENTAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PEG400 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OH2 C12 1PE sing 1 n n OH2 HO2 1PE sing 2 n n C12 C22 1PE sing 3 n n C12 H121 1PE sing 4 n n C12 H122 1PE sing 5 n n C22 OH3 1PE sing 6 n n C22 H221 1PE sing 7 n n C22 H222 1PE sing 8 n n OH3 C23 1PE sing 9 n n C13 C23 1PE sing 10 n n C13 OH4 1PE sing 11 n n C13 H131 1PE sing 12 n n C13 H132 1PE sing 13 n n C23 H231 1PE sing 14 n n C23 H232 1PE sing 15 n n OH4 C24 1PE sing 16 n n C14 C24 1PE sing 17 n n C14 OH5 1PE sing 18 n n C14 H141 1PE sing 19 n n C14 H142 1PE sing 20 n n C24 H241 1PE sing 21 n n C24 H242 1PE sing 22 n n OH5 C25 1PE sing 23 n n C15 C25 1PE sing 24 n n C15 OH6 1PE sing 25 n n C15 H151 1PE sing 26 n n C15 H152 1PE sing 27 n n C25 H251 1PE sing 28 n n C25 H252 1PE sing 29 n n OH6 C26 1PE sing 30 n n C16 C26 1PE sing 31 n n C16 OH7 1PE sing 32 n n C16 H161 1PE sing 33 n n C16 H162 1PE sing 34 n n C26 H261 1PE sing 35 n n C26 H262 1PE sing 36 n n OH7 HO7 1PE sing 37 n n # _atom_sites.entry_id 5FPQ _atom_sites.fract_transf_matrix[1][1] 0.009536 _atom_sites.fract_transf_matrix[1][2] 0.005505 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011011 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003094 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 1PE A 1 1543 1543 1PE 1PE . D 3 HOH A 1 2001 2001 HOH HOH . D 3 HOH A 2 2002 2002 HOH HOH . D 3 HOH A 3 2003 2003 HOH HOH . D 3 HOH A 4 2004 2004 HOH HOH . D 3 HOH A 5 2005 2005 HOH HOH . D 3 HOH A 6 2006 2006 HOH HOH . D 3 HOH A 7 2007 2007 HOH HOH . D 3 HOH A 8 2008 2008 HOH HOH . D 3 HOH A 9 2009 2009 HOH HOH . D 3 HOH A 10 2010 2010 HOH HOH . D 3 HOH A 11 2011 2011 HOH HOH . D 3 HOH A 12 2012 2012 HOH HOH . D 3 HOH A 13 2013 2013 HOH HOH . D 3 HOH A 14 2014 2014 HOH HOH . D 3 HOH A 15 2015 2015 HOH HOH . D 3 HOH A 16 2016 2016 HOH HOH . D 3 HOH A 17 2017 2017 HOH HOH . D 3 HOH A 18 2018 2018 HOH HOH . D 3 HOH A 19 2019 2019 HOH HOH . D 3 HOH A 20 2020 2020 HOH HOH . D 3 HOH A 21 2021 2021 HOH HOH . D 3 HOH A 22 2022 2022 HOH HOH . D 3 HOH A 23 2023 2023 HOH HOH . D 3 HOH A 24 2024 2024 HOH HOH . D 3 HOH A 25 2025 2025 HOH HOH . D 3 HOH A 26 2026 2026 HOH HOH . D 3 HOH A 27 2027 2027 HOH HOH . D 3 HOH A 28 2028 2028 HOH HOH . D 3 HOH A 29 2029 2029 HOH HOH . D 3 HOH A 30 2030 2030 HOH HOH . D 3 HOH A 31 2031 2031 HOH HOH . D 3 HOH A 32 2032 2032 HOH HOH . D 3 HOH A 33 2033 2033 HOH HOH . D 3 HOH A 34 2034 2034 HOH HOH . D 3 HOH A 35 2035 2035 HOH HOH . D 3 HOH A 36 2036 2036 HOH HOH . D 3 HOH A 37 2037 2037 HOH HOH . D 3 HOH A 38 2038 2038 HOH HOH . D 3 HOH A 39 2039 2039 HOH HOH . D 3 HOH A 40 2040 2040 HOH HOH . D 3 HOH A 41 2041 2041 HOH HOH . D 3 HOH A 42 2042 2042 HOH HOH . D 3 HOH A 43 2043 2043 HOH HOH . D 3 HOH A 44 2044 2044 HOH HOH . D 3 HOH A 45 2045 2045 HOH HOH . D 3 HOH A 46 2046 2046 HOH HOH . D 3 HOH A 47 2047 2047 HOH HOH . D 3 HOH A 48 2048 2048 HOH HOH . D 3 HOH A 49 2049 2049 HOH HOH . D 3 HOH A 50 2050 2050 HOH HOH . D 3 HOH A 51 2051 2051 HOH HOH . D 3 HOH A 52 2052 2052 HOH HOH . D 3 HOH A 53 2053 2053 HOH HOH . D 3 HOH A 54 2054 2054 HOH HOH . E 3 HOH B 1 2001 2001 HOH HOH . E 3 HOH B 2 2002 2002 HOH HOH . E 3 HOH B 3 2003 2003 HOH HOH . E 3 HOH B 4 2004 2004 HOH HOH . E 3 HOH B 5 2005 2005 HOH HOH . E 3 HOH B 6 2006 2006 HOH HOH . E 3 HOH B 7 2007 2007 HOH HOH . E 3 HOH B 8 2008 2008 HOH HOH . E 3 HOH B 9 2009 2009 HOH HOH . E 3 HOH B 10 2010 2010 HOH HOH . E 3 HOH B 11 2011 2011 HOH HOH . E 3 HOH B 12 2012 2012 HOH HOH . E 3 HOH B 13 2013 2013 HOH HOH . E 3 HOH B 14 2014 2014 HOH HOH . E 3 HOH B 15 2015 2015 HOH HOH . E 3 HOH B 16 2016 2016 HOH HOH . E 3 HOH B 17 2017 2017 HOH HOH . E 3 HOH B 18 2018 2018 HOH HOH . E 3 HOH B 19 2019 2019 HOH HOH . E 3 HOH B 20 2020 2020 HOH HOH . E 3 HOH B 21 2021 2021 HOH HOH . E 3 HOH B 22 2022 2022 HOH HOH . E 3 HOH B 23 2023 2023 HOH HOH . E 3 HOH B 24 2024 2024 HOH HOH . E 3 HOH B 25 2025 2025 HOH HOH . E 3 HOH B 26 2026 2026 HOH HOH . E 3 HOH B 27 2027 2027 HOH HOH . E 3 HOH B 28 2028 2028 HOH HOH . E 3 HOH B 29 2029 2029 HOH HOH . E 3 HOH B 30 2030 2030 HOH HOH . E 3 HOH B 31 2031 2031 HOH HOH . E 3 HOH B 32 2032 2032 HOH HOH . E 3 HOH B 33 2033 2033 HOH HOH . E 3 HOH B 34 2034 2034 HOH HOH . E 3 HOH B 35 2035 2035 HOH HOH . E 3 HOH B 36 2036 2036 HOH HOH . E 3 HOH B 37 2037 2037 HOH HOH . E 3 HOH B 38 2038 2038 HOH HOH . E 3 HOH B 39 2039 2039 HOH HOH . E 3 HOH B 40 2040 2040 HOH HOH . E 3 HOH B 41 2041 2041 HOH HOH . E 3 HOH B 42 2042 2042 HOH HOH . E 3 HOH B 43 2043 2043 HOH HOH . E 3 HOH B 44 2044 2044 HOH HOH . E 3 HOH B 45 2045 2045 HOH HOH . E 3 HOH B 46 2046 2046 HOH HOH . E 3 HOH B 47 2047 2047 HOH HOH . E 3 HOH B 48 2048 2048 HOH HOH . E 3 HOH B 49 2049 2049 HOH HOH . E 3 HOH B 50 2050 2050 HOH HOH . E 3 HOH B 51 2051 2051 HOH HOH . E 3 HOH B 52 2052 2052 HOH HOH . E 3 HOH B 53 2053 2053 HOH HOH . E 3 HOH B 54 2054 2054 HOH HOH . E 3 HOH B 55 2055 2055 HOH HOH . E 3 HOH B 56 2056 2056 HOH HOH . E 3 HOH B 57 2057 2057 HOH HOH . E 3 HOH B 58 2058 2058 HOH HOH . E 3 HOH B 59 2059 2059 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OH2 1PE . . . C 2 29.354 34.313 31.739 1 80.85 ? OH2 1PE 1543 A 1 HETATM 2 C C12 1PE . . . C 2 30.294 35.237 32.253 1 76.86 ? C12 1PE 1543 A 1 HETATM 3 C C22 1PE . . . C 2 31.337 34.542 33.164 1 74.66 ? C22 1PE 1543 A 1 HETATM 4 O OH3 1PE . . . C 2 31.837 35.528 34.109 1 73.11 ? OH3 1PE 1543 A 1 HETATM 5 C C13 1PE . . . C 2 33.489 37.218 34.686 1 70.01 ? C13 1PE 1543 A 1 HETATM 6 C C23 1PE . . . C 2 33.23 35.77 34.163 1 69.78 ? C23 1PE 1543 A 1 HETATM 7 O OH4 1PE . . . C 2 33.408 38.158 33.575 1 71.86 ? OH4 1PE 1543 A 1 HETATM 8 C C14 1PE . . . C 2 32.823 40.272 32.495 1 70.37 ? C14 1PE 1543 A 1 HETATM 9 C C24 1PE . . . C 2 33.089 39.555 33.837 1 70.96 ? C24 1PE 1543 A 1 HETATM 10 O OH5 1PE . . . C 2 31.635 39.759 31.86 1 69.09 ? OH5 1PE 1543 A 1 HETATM 11 C C15 1PE . . . C 2 31.084 38.506 29.824 1 74.63 ? C15 1PE 1543 A 1 HETATM 12 C C25 1PE . . . C 2 31.569 39.842 30.413 1 73.36 ? C25 1PE 1543 A 1 HETATM 13 O OH6 1PE . . . C 2 31.187 38.473 28.384 1 75.47 ? OH6 1PE 1543 A 1 HETATM 14 C C16 1PE . . . C 2 31.934 37.112 26.499 1 71.07 ? C16 1PE 1543 A 1 HETATM 15 C C26 1PE . . . C 2 31.158 37.148 27.844 1 76.5 ? C26 1PE 1543 A 1 HETATM 16 O OH7 1PE . . . C 2 32.019 35.793 26.046 1 64.79 ? OH7 1PE 1543 A 1 HETATM 17 H HO2 1PE . . . C 2 28.675 34.765 31.324 1 97.02 ? HO2 1PE 1543 A 1 HETATM 18 H H121 1PE . . . C 2 30.757 35.674 31.508 1 92.23 ? H121 1PE 1543 A 1 HETATM 19 H H122 1PE . . . C 2 29.814 35.92 32.778 1 92.23 ? H122 1PE 1543 A 1 HETATM 20 H H221 1PE . . . C 2 30.912 33.803 33.651 1 89.59 ? H221 1PE 1543 A 1 HETATM 21 H H222 1PE . . . C 2 32.08 34.196 32.615 1 89.59 ? H222 1PE 1543 A 1 HETATM 22 H H131 1PE . . . C 2 34.382 37.268 35.084 1 84.02 ? H131 1PE 1543 A 1 HETATM 23 H H132 1PE . . . C 2 32.816 37.445 35.361 1 84.02 ? H132 1PE 1543 A 1 HETATM 24 H H231 1PE . . . C 2 33.606 35.685 33.263 1 83.74 ? H231 1PE 1543 A 1 HETATM 25 H H232 1PE . . . C 2 33.654 35.118 34.756 1 83.74 ? H232 1PE 1543 A 1 HETATM 26 H H141 1PE . . . C 2 32.738 41.232 32.642 1 84.44 ? H141 1PE 1543 A 1 HETATM 27 H H142 1PE . . . C 2 33.575 40.107 31.905 1 84.44 ? H142 1PE 1543 A 1 HETATM 28 H H241 1PE . . . C 2 32.286 39.607 34.399 1 85.15 ? H241 1PE 1543 A 1 HETATM 29 H H242 1PE . . . C 2 33.839 39.983 34.297 1 85.15 ? H242 1PE 1543 A 1 HETATM 30 H H151 1PE . . . C 2 30.158 38.357 30.086 1 89.56 ? H151 1PE 1543 A 1 HETATM 31 H H152 1PE . . . C 2 31.638 37.784 30.19 1 89.56 ? H152 1PE 1543 A 1 HETATM 32 H H251 1PE . . . C 2 32.464 40.025 30.07 1 88.03 ? H251 1PE 1543 A 1 HETATM 33 H H252 1PE . . . C 2 30.966 40.563 30.148 1 88.03 ? H252 1PE 1543 A 1 HETATM 34 H H161 1PE . . . C 2 32.826 37.47 26.629 1 85.29 ? H161 1PE 1543 A 1 HETATM 35 H H162 1PE . . . C 2 31.457 37.653 25.833 1 85.29 ? H162 1PE 1543 A 1 HETATM 36 H H261 1PE . . . C 2 31.583 36.531 28.476 1 91.8 ? H261 1PE 1543 A 1 HETATM 37 H H262 1PE . . . C 2 30.227 36.875 27.698 1 91.8 ? H262 1PE 1543 A 1 HETATM 38 H HO7 1PE . . . C 2 32.337 35.787 25.233 1 77.75 ? HO7 1PE 1543 A 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 36 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 38 #