data_5FQ6 # _model_server_result.job_id WRoBn9-6UYlPaITpDzayng _model_server_result.datetime_utc '2025-07-18 01:23:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5fq6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Z","auth_seq_id":1985}' # _entry.id 5FQ6 # _exptl.entry_id 5FQ6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.593 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-decanoyloxypropyl decanoate' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.23 _cell.angle_gamma 90 _cell.entry_id 5FQ6 _cell.length_a 222.027 _cell.length_b 91.941 _cell.length_c 261.219 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5FQ6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA octameric 8 software_defined_assembly 1 PISA octameric 8 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression C,D,E,G,L,M,N,O,T,U,V,Z,AA,BA 1 1 A,B,F,H,I,J,K,P,Q,R,S,W,X,Y 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 Q N N ? 5 T N N ? 5 W N N ? 5 Z N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ALA 82 A ALA 82 1_555 R NA NA . B NA 1986 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc2 B OD1 ASP 280 B ASP 280 1_555 S CA CA . B CA 1987 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc3 B O GLY 281 B GLY 281 1_555 S CA CA . B CA 1987 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc4 B O ILE 283 B ILE 283 1_555 S CA CA . B CA 1987 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? metalc ? metalc5 B O THR 285 B THR 285 1_555 S CA CA . B CA 1987 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc6 B OD1 ASP 288 B ASP 288 1_555 S CA CA . B CA 1987 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? metalc ? metalc7 B O ALA 631 B ALA 631 1_555 R NA NA . B NA 1986 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc8 B OD1 ASN 633 B ASN 633 1_555 R NA NA . B NA 1986 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc9 C O ALA 82 C ALA 82 1_555 U NA NA . D NA 1986 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc10 D OD1 ASP 280 D ASP 280 1_555 V CA CA . D CA 1987 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc11 D O GLY 281 D GLY 281 1_555 V CA CA . D CA 1987 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc12 D O ILE 283 D ILE 283 1_555 V CA CA . D CA 1987 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc13 D O THR 285 D THR 285 1_555 V CA CA . D CA 1987 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc14 D OD1 ASP 288 D ASP 288 1_555 V CA CA . D CA 1987 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.886 ? metalc ? metalc15 D O ALA 631 D ALA 631 1_555 U NA NA . D NA 1986 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc16 D OD1 ASN 633 D ASN 633 1_555 U NA NA . D NA 1986 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc17 H O ALA 82 H ALA 82 1_555 X NA NA . I NA 1986 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? metalc ? metalc18 I OD1 ASP 280 I ASP 280 1_555 Y CA CA . I CA 1987 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc19 I O GLY 281 I GLY 281 1_555 Y CA CA . I CA 1987 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc20 I O ILE 283 I ILE 283 1_555 Y CA CA . I CA 1987 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc21 I O THR 285 I THR 285 1_555 Y CA CA . I CA 1987 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc22 I OD1 ASP 288 I ASP 288 1_555 Y CA CA . I CA 1987 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.686 ? metalc ? metalc23 I O ALA 631 I ALA 631 1_555 X NA NA . I NA 1986 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc24 I OD1 ASN 633 I ASN 633 1_555 X NA NA . I NA 1986 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc25 L O ALA 82 L ALA 82 1_555 AA NA NA . M NA 1986 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc26 M OD1 ASP 280 M ASP 280 1_555 BA CA CA . M CA 1987 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc27 M O GLY 281 M GLY 281 1_555 BA CA CA . M CA 1987 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? metalc ? metalc28 M O ILE 283 M ILE 283 1_555 BA CA CA . M CA 1987 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc29 M O THR 285 M THR 285 1_555 BA CA CA . M CA 1987 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? metalc ? metalc30 M OD2 ASP 288 M ASP 288 1_555 BA CA CA . M CA 1987 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? metalc ? metalc31 M OD1 ASP 288 M ASP 288 1_555 BA CA CA . M CA 1987 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.015 ? metalc ? metalc32 M O ALA 631 M ALA 631 1_555 AA NA NA . M NA 1986 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc33 M OD1 ASN 633 M ASN 633 1_555 AA NA NA . M NA 1986 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? # _chem_comp.formula 'C23 H44 O4' _chem_comp.formula_weight 384.593 _chem_comp.id KR0 _chem_comp.mon_nstd_flag . _chem_comp.name '3-decanoyloxypropyl decanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 KR0 sing 171 n n C1 C2 KR0 sing 172 n n O1 C7 KR0 sing 173 n n C2 C3 KR0 sing 174 n n C3 O4 KR0 sing 175 n n C4 C6 KR0 sing 176 n n C4 C11 KR0 sing 177 n n O4 C5 KR0 sing 178 n n C5 O8 KR0 doub 179 n n C5 C10 KR0 sing 180 n n C6 C8 KR0 sing 181 n n C7 O9 KR0 doub 182 n n C7 C12 KR0 sing 183 n n C8 C9 KR0 sing 184 n n C9 C14 KR0 sing 185 n n C10 C11 KR0 sing 186 n n C12 C13 KR0 sing 187 n n C13 C17 KR0 sing 188 n n C14 C15 KR0 sing 189 n n C15 C16 KR0 sing 190 n n C17 C18 KR0 sing 191 n n C18 C19 KR0 sing 192 n n C19 C20 KR0 sing 193 n n C20 C21 KR0 sing 194 n n C21 C22 KR0 sing 195 n n C22 C23 KR0 sing 196 n n C1 H1 KR0 sing 197 n n C1 H1A KR0 sing 198 n n C2 H2 KR0 sing 199 n n C2 H2A KR0 sing 200 n n C3 H3 KR0 sing 201 n n C3 H3A KR0 sing 202 n n C4 H4 KR0 sing 203 n n C4 H4A KR0 sing 204 n n C6 H6 KR0 sing 205 n n C6 H6A KR0 sing 206 n n C8 H8 KR0 sing 207 n n C8 H8A KR0 sing 208 n n C9 H9 KR0 sing 209 n n C9 H9A KR0 sing 210 n n C10 H10 KR0 sing 211 n n C10 H10A KR0 sing 212 n n C11 H11 KR0 sing 213 n n C11 H11A KR0 sing 214 n n C12 H12 KR0 sing 215 n n C12 H12A KR0 sing 216 n n C13 H13 KR0 sing 217 n n C13 H13A KR0 sing 218 n n C14 H14 KR0 sing 219 n n C14 H14A KR0 sing 220 n n C15 H15 KR0 sing 221 n n C15 H15A KR0 sing 222 n n C16 H16 KR0 sing 223 n n C16 H16A KR0 sing 224 n n C16 H16B KR0 sing 225 n n C17 H17 KR0 sing 226 n n C17 H17A KR0 sing 227 n n C18 H18 KR0 sing 228 n n C18 H18A KR0 sing 229 n n C19 H19 KR0 sing 230 n n C19 H19A KR0 sing 231 n n C20 H20 KR0 sing 232 n n C20 H20A KR0 sing 233 n n C21 H21 KR0 sing 234 n n C21 H21A KR0 sing 235 n n C22 H22 KR0 sing 236 n n C22 H22A KR0 sing 237 n n C23 H23 KR0 sing 238 n n C23 H23A KR0 sing 239 n n C23 H23B KR0 sing 240 n n # _atom_sites.entry_id 5FQ6 _atom_sites.fract_transf_matrix[1][1] 0.004504 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000651 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010877 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003868 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code Q 5 KR0 B 1 1985 1985 KR0 KR0 . R 6 NA B 1 1986 1986 NA NA . S 7 CA B 1 1987 1987 CA CA . T 5 KR0 D 1 1985 1985 KR0 KR0 . U 6 NA D 1 1986 1986 NA NA . V 7 CA D 1 1987 1987 CA CA . W 5 KR0 I 1 1985 1985 KR0 KR0 . X 6 NA I 1 1986 1986 NA NA . Y 7 CA I 1 1987 1987 CA CA . Z 5 KR0 M 1 1985 1985 KR0 KR0 . AA 6 NA M 1 1986 1986 NA NA . BA 7 CA M 1 1987 1987 CA CA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 KR0 . . . Z 5 -174.743 3.544 -37.414 1 58.54 ? C1 KR0 1985 M 1 HETATM 2 O O1 KR0 . . . Z 5 -174.448 4.923 -37.214 1 59.09 ? O1 KR0 1985 M 1 HETATM 3 C C2 KR0 . . . Z 5 -173.755 2.925 -38.399 1 49.99 ? C2 KR0 1985 M 1 HETATM 4 C C3 KR0 . . . Z 5 -173.284 1.613 -37.823 1 52.51 ? C3 KR0 1985 M 1 HETATM 5 C C4 KR0 . . . Z 5 -172.259 1.57 -31.698 1 58.11 ? C4 KR0 1985 M 1 HETATM 6 O O4 KR0 . . . Z 5 -173.537 1.686 -36.419 1 59.89 ? O4 KR0 1985 M 1 HETATM 7 C C5 KR0 . . . Z 5 -172.533 1.106 -35.554 1 66.42 ? C5 KR0 1985 M 1 HETATM 8 C C6 KR0 . . . Z 5 -173.74 1.701 -31.306 1 63.76 ? C6 KR0 1985 M 1 HETATM 9 C C7 KR0 . . . Z 5 -174.685 5.561 -35.925 1 73.35 ? C7 KR0 1985 M 1 HETATM 10 C C8 KR0 . . . Z 5 -174.1 1.065 -29.955 1 64.09 ? C8 KR0 1985 M 1 HETATM 11 O O8 KR0 . . . Z 5 -171.491 0.775 -36.086 1 75.21 ? O8 KR0 1985 M 1 HETATM 12 C C9 KR0 . . . Z 5 -175.595 1.183 -29.62 1 62.66 ? C9 KR0 1985 M 1 HETATM 13 O O9 KR0 . . . Z 5 -174.304 6.708 -35.778 1 81.61 ? O9 KR0 1985 M 1 HETATM 14 C C10 KR0 . . . Z 5 -172.75 0.885 -34.072 1 63.16 ? C10 KR0 1985 M 1 HETATM 15 C C11 KR0 . . . Z 5 -171.998 1.873 -33.181 1 52.36 ? C11 KR0 1985 M 1 HETATM 16 C C12 KR0 . . . Z 5 -175.372 4.864 -34.767 1 75.47 ? C12 KR0 1985 M 1 HETATM 17 C C13 KR0 . . . Z 5 -175.629 5.888 -33.663 1 66.72 ? C13 KR0 1985 M 1 HETATM 18 C C14 KR0 . . . Z 5 -175.969 0.671 -28.217 1 59.29 ? C14 KR0 1985 M 1 HETATM 19 C C15 KR0 . . . Z 5 -177.484 0.587 -27.986 1 56.91 ? C15 KR0 1985 M 1 HETATM 20 C C16 KR0 . . . Z 5 -177.921 -0.269 -26.807 1 49.72 ? C16 KR0 1985 M 1 HETATM 21 C C17 KR0 . . . Z 5 -177.048 5.77 -33.107 1 65.44 ? C17 KR0 1985 M 1 HETATM 22 C C18 KR0 . . . Z 5 -177.071 5.068 -31.746 1 60.42 ? C18 KR0 1985 M 1 HETATM 23 C C19 KR0 . . . Z 5 -178.446 5.147 -31.079 1 54.96 ? C19 KR0 1985 M 1 HETATM 24 C C20 KR0 . . . Z 5 -178.515 4.482 -29.701 1 55.14 ? C20 KR0 1985 M 1 HETATM 25 C C21 KR0 . . . Z 5 -179.853 4.737 -28.984 1 51.86 ? C21 KR0 1985 M 1 HETATM 26 C C22 KR0 . . . Z 5 -179.956 4.025 -27.625 1 48.51 ? C22 KR0 1985 M 1 HETATM 27 C C23 KR0 . . . Z 5 -181.239 4.312 -26.849 1 42.93 ? C23 KR0 1985 M 1 # _model_server_stats.io_time_ms 88 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 51 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #