data_5FQ6 # _model_server_result.job_id ErMw6mgiqbUlLNMMm78Tfw _model_server_result.datetime_utc '2025-07-14 16:20:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5fq6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"X","auth_seq_id":1986}' # _entry.id 5FQ6 # _exptl.entry_id 5FQ6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.23 _cell.angle_gamma 90 _cell.entry_id 5FQ6 _cell.length_a 222.027 _cell.length_b 91.941 _cell.length_c 261.219 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5FQ6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA octameric 8 software_defined_assembly 1 PISA octameric 8 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression C,D,E,G,L,M,N,O,T,U,V,Z,AA,BA 1 1 A,B,F,H,I,J,K,P,Q,R,S,W,X,Y 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 R N N ? 6 U N N ? 6 X N N ? 6 AA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ALA 82 A ALA 82 1_555 R NA NA . B NA 1986 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc2 B OD1 ASP 280 B ASP 280 1_555 S CA CA . B CA 1987 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc3 B O GLY 281 B GLY 281 1_555 S CA CA . B CA 1987 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc4 B O ILE 283 B ILE 283 1_555 S CA CA . B CA 1987 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? metalc ? metalc5 B O THR 285 B THR 285 1_555 S CA CA . B CA 1987 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc6 B OD1 ASP 288 B ASP 288 1_555 S CA CA . B CA 1987 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? metalc ? metalc7 B O ALA 631 B ALA 631 1_555 R NA NA . B NA 1986 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc8 B OD1 ASN 633 B ASN 633 1_555 R NA NA . B NA 1986 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc9 C O ALA 82 C ALA 82 1_555 U NA NA . D NA 1986 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc10 D OD1 ASP 280 D ASP 280 1_555 V CA CA . D CA 1987 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc11 D O GLY 281 D GLY 281 1_555 V CA CA . D CA 1987 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc12 D O ILE 283 D ILE 283 1_555 V CA CA . D CA 1987 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc13 D O THR 285 D THR 285 1_555 V CA CA . D CA 1987 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc14 D OD1 ASP 288 D ASP 288 1_555 V CA CA . D CA 1987 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.886 ? metalc ? metalc15 D O ALA 631 D ALA 631 1_555 U NA NA . D NA 1986 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc16 D OD1 ASN 633 D ASN 633 1_555 U NA NA . D NA 1986 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc17 H O ALA 82 H ALA 82 1_555 X NA NA . I NA 1986 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? metalc ? metalc18 I OD1 ASP 280 I ASP 280 1_555 Y CA CA . I CA 1987 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc19 I O GLY 281 I GLY 281 1_555 Y CA CA . I CA 1987 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc20 I O ILE 283 I ILE 283 1_555 Y CA CA . I CA 1987 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc21 I O THR 285 I THR 285 1_555 Y CA CA . I CA 1987 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc22 I OD1 ASP 288 I ASP 288 1_555 Y CA CA . I CA 1987 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.686 ? metalc ? metalc23 I O ALA 631 I ALA 631 1_555 X NA NA . I NA 1986 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc24 I OD1 ASN 633 I ASN 633 1_555 X NA NA . I NA 1986 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc25 L O ALA 82 L ALA 82 1_555 AA NA NA . M NA 1986 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc26 M OD1 ASP 280 M ASP 280 1_555 BA CA CA . M CA 1987 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc27 M O GLY 281 M GLY 281 1_555 BA CA CA . M CA 1987 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? metalc ? metalc28 M O ILE 283 M ILE 283 1_555 BA CA CA . M CA 1987 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc29 M O THR 285 M THR 285 1_555 BA CA CA . M CA 1987 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? metalc ? metalc30 M OD2 ASP 288 M ASP 288 1_555 BA CA CA . M CA 1987 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? metalc ? metalc31 M OD1 ASP 288 M ASP 288 1_555 BA CA CA . M CA 1987 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.015 ? metalc ? metalc32 M O ALA 631 M ALA 631 1_555 AA NA NA . M NA 1986 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc33 M OD1 ASN 633 M ASN 633 1_555 AA NA NA . M NA 1986 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5FQ6 _atom_sites.fract_transf_matrix[1][1] 0.004504 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000651 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010877 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003868 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code Q 5 KR0 B 1 1985 1985 KR0 KR0 . R 6 NA B 1 1986 1986 NA NA . S 7 CA B 1 1987 1987 CA CA . T 5 KR0 D 1 1985 1985 KR0 KR0 . U 6 NA D 1 1986 1986 NA NA . V 7 CA D 1 1987 1987 CA CA . W 5 KR0 I 1 1985 1985 KR0 KR0 . X 6 NA I 1 1986 1986 NA NA . Y 7 CA I 1 1987 1987 CA CA . Z 5 KR0 M 1 1985 1985 KR0 KR0 . AA 6 NA M 1 1986 1986 NA NA . BA 7 CA M 1 1987 1987 CA CA . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id X _atom_site.label_entity_id 6 _atom_site.Cartn_x -49.985 _atom_site.Cartn_y -1.754 _atom_site.Cartn_z -61.839 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 32.97 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 1986 _atom_site.auth_asym_id I _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 291 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 76 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #