data_5FQ7 # _model_server_result.job_id -kvsDXrr06QrgnpeOo36uA _model_server_result.datetime_utc '2025-07-12 23:37:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5fq7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":1987}' # _entry.id 5FQ7 # _exptl.entry_id 5FQ7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5FQ7 _cell.length_a 123.591 _cell.length_b 180.159 _cell.length_c 245.747 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5FQ7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details decameric _pdbx_struct_assembly.oligomeric_count 10 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 L N N ? 7 M N N ? 7 N N N ? 7 O N N ? 7 Q N N ? 7 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ALA 82 A ALA 82 1_555 K MG MG . B MG 1985 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc2 B OD1 ASP 280 B ASP 280 1_555 M NA NA . B NA 1987 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc3 B O GLY 281 B GLY 281 1_555 M NA NA . B NA 1987 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc4 B O ILE 283 B ILE 283 1_555 M NA NA . B NA 1987 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc5 B O THR 285 B THR 285 1_555 M NA NA . B NA 1987 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc6 B OD1 ASP 288 B ASP 288 1_555 M NA NA . B NA 1987 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.638 ? metalc ? metalc7 B OD2 ASP 288 B ASP 288 1_555 M NA NA . B NA 1987 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.809 ? metalc ? metalc8 B O ALA 631 B ALA 631 1_555 K MG MG . B MG 1985 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc9 B OD1 ASN 633 B ASN 633 1_555 K MG MG . B MG 1985 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc10 B OD2 ASP 850 B ASP 850 1_555 N NA NA . B NA 1988 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.982 ? metalc ? metalc11 B OD1 ASP 850 B ASP 850 1_555 N NA NA . B NA 1988 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? metalc ? metalc12 C O ALA 82 C ALA 82 1_555 P MG MG . D MG 1985 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc13 C O ARG 408 C ARG 408 1_555 O NA NA . C NA 1481 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc14 C OD1 ASP 411 C ASP 411 1_555 O NA NA . C NA 1481 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc15 C OD2 ASP 411 C ASP 411 1_555 O NA NA . C NA 1481 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc16 C OD1 ASP 478 C ASP 478 1_555 O NA NA . C NA 1481 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc17 C OXT LYS 480 C LYS 480 1_555 O NA NA . C NA 1481 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc18 D OD1 ASP 280 D ASP 280 1_555 R NA NA . D NA 1987 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc19 D O GLY 281 D GLY 281 1_555 R NA NA . D NA 1987 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc20 D O ILE 283 D ILE 283 1_555 R NA NA . D NA 1987 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc21 D O THR 285 D THR 285 1_555 R NA NA . D NA 1987 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? metalc ? metalc22 D OD2 ASP 288 D ASP 288 1_555 R NA NA . D NA 1987 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.614 ? metalc ? metalc23 D OD1 ASP 288 D ASP 288 1_555 R NA NA . D NA 1987 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc24 D O ALA 631 D ALA 631 1_555 P MG MG . D MG 1985 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc25 D OD1 ASN 633 D ASN 633 1_555 P MG MG . D MG 1985 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc26 D OD1 ASP 850 D ASP 850 1_555 Q NA NA . D NA 1986 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5FQ7 _atom_sites.fract_transf_matrix[1][1] 0.008091 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005551 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004069 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 6 MG B 1 1985 1985 MG MG . L 7 NA B 1 1986 1986 NA NA . M 7 NA B 1 1987 1987 NA NA . N 7 NA B 1 1988 1988 NA NA . O 7 NA C 1 1481 1481 NA NA . P 6 MG D 1 1985 1985 MG MG . Q 7 NA D 1 1986 1986 NA NA . R 7 NA D 1 1987 1987 NA NA . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id M _atom_site.label_entity_id 7 _atom_site.Cartn_x 32.738 _atom_site.Cartn_y -14.566 _atom_site.Cartn_z -52.75 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 30.11 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 1987 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 196 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 53 _model_server_stats.query_time_ms 595 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 1 #