data_5FR2 # _model_server_result.job_id uif-ns6ujg3iWrNvvdO6hA _model_server_result.datetime_utc '2024-10-11 06:16:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5fr2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1190}' # _entry.id 5FR2 # _exptl.entry_id 5FR2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 206.367 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description FARNESYL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5FR2 _cell.length_a 176.979 _cell.length_b 176.979 _cell.length_c 63.896 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5FR2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 171 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 62' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 192 A CYS 190 1_555 C C1 FAR . A FAR 1190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.826 ? covale ? covale2 B C ILE 186 B ILE 177 1_555 B N ALY 187 B ALY 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 B C ALY 187 B ALY 178 1_555 B N SER 188 B SER 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? metalc ? metalc1 A OG1 THR 21 A THR 19 1_555 E MG MG . A MG 1193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? metalc ? metalc2 A O THR 39 A THR 37 1_555 E MG MG . A MG 1193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc3 D O3B GDP . A GDP 1192 1_555 E MG MG . A MG 1193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc4 E MG MG . A MG 1193 1_555 G O HOH . A HOH 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? # _chem_comp.formula 'C15 H26' _chem_comp.formula_weight 206.367 _chem_comp.id FAR _chem_comp.mon_nstd_flag . _chem_comp.name FARNESYL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 FAR sing 135 n n C1 H11 FAR sing 136 n n C1 H12A FAR sing 137 n n C1 H13 FAR sing 138 n n C2 C3 FAR doub 139 e n C2 H2 FAR sing 140 n n C3 C5 FAR sing 141 n n C3 C4 FAR sing 142 n n C5 C6 FAR sing 143 n n C5 H51 FAR sing 144 n n C5 H52 FAR sing 145 n n C6 C7 FAR sing 146 n n C6 H61 FAR sing 147 n n C6 H62 FAR sing 148 n n C7 C8 FAR doub 149 e n C7 H7 FAR sing 150 n n C8 C9 FAR sing 151 n n C8 C10 FAR sing 152 n n C9 C11 FAR sing 153 n n C9 H91 FAR sing 154 n n C9 H92 FAR sing 155 n n C11 C12 FAR sing 156 n n C11 H111 FAR sing 157 n n C11 H112 FAR sing 158 n n C12 C13 FAR doub 159 n n C12 H12 FAR sing 160 n n C13 C14 FAR sing 161 n n C13 C15 FAR sing 162 n n C14 H141 FAR sing 163 n n C14 H142 FAR sing 164 n n C14 H143 FAR sing 165 n n C15 H151 FAR sing 166 n n C15 H152 FAR sing 167 n n C15 H153 FAR sing 168 n n C4 H41 FAR sing 169 n n C4 H42 FAR sing 170 n n C4 H43 FAR sing 171 n n C10 H101 FAR sing 172 n n C10 H102 FAR sing 173 n n C10 H103 FAR sing 174 n n # _atom_sites.entry_id 5FR2 _atom_sites.fract_transf_matrix[1][1] 0.00565 _atom_sites.fract_transf_matrix[1][2] 0.003262 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006525 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01565 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 FAR A 1 1190 1190 FAR FAR . D 4 GDP A 1 1192 1192 GDP GDP . E 5 MG A 1 1193 1193 MG MG . F 6 BGC B 1 1206 1206 BGC BGC . G 7 HOH A 1 2001 2001 HOH HOH . G 7 HOH A 2 2002 2002 HOH HOH . G 7 HOH A 3 2003 2003 HOH HOH . G 7 HOH A 4 2004 2004 HOH HOH . G 7 HOH A 5 2005 2005 HOH HOH . G 7 HOH A 6 2006 2006 HOH HOH . G 7 HOH A 7 2007 2007 HOH HOH . G 7 HOH A 8 2008 2008 HOH HOH . G 7 HOH A 9 2009 2009 HOH HOH . G 7 HOH A 10 2010 2010 HOH HOH . G 7 HOH A 11 2011 2011 HOH HOH . H 7 HOH B 1 2001 2001 HOH HOH . H 7 HOH B 2 2002 2002 HOH HOH . H 7 HOH B 3 2003 2003 HOH HOH . H 7 HOH B 4 2004 2004 HOH HOH . H 7 HOH B 5 2005 2005 HOH HOH . H 7 HOH B 6 2006 2006 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 FAR . . . C 3 77.55 -33.865 -24.389 1 107.8 ? C1 FAR 1190 A 1 HETATM 2 C C2 FAR . . . C 3 78.07 -35.288 -24.198 1 93.7 ? C2 FAR 1190 A 1 HETATM 3 C C3 FAR . . . C 3 79.184 -35.519 -25.219 1 85.23 ? C3 FAR 1190 A 1 HETATM 4 C C5 FAR . . . C 3 79.834 -36.896 -25.062 1 74.62 ? C5 FAR 1190 A 1 HETATM 5 C C6 FAR . . . C 3 80.904 -36.982 -26.165 1 69.69 ? C6 FAR 1190 A 1 HETATM 6 C C7 FAR . . . C 3 81.831 -38.219 -26.182 1 66.2 ? C7 FAR 1190 A 1 HETATM 7 C C8 FAR . . . C 3 81.361 -39.669 -26.368 1 63.66 ? C8 FAR 1190 A 1 HETATM 8 C C9 FAR . . . C 3 82.573 -40.647 -26.345 1 61.76 ? C9 FAR 1190 A 1 HETATM 9 C C11 FAR . . . C 3 83.647 -40.564 -27.478 1 60.75 ? C11 FAR 1190 A 1 HETATM 10 C C12 FAR . . . C 3 84.391 -39.237 -27.637 1 61.3 ? C12 FAR 1190 A 1 HETATM 11 C C13 FAR . . . C 3 85.36 -39.367 -28.8 1 64.5 ? C13 FAR 1190 A 1 HETATM 12 C C14 FAR . . . C 3 86.077 -38.044 -29.003 1 66.96 ? C14 FAR 1190 A 1 HETATM 13 C C15 FAR . . . C 3 86.359 -40.477 -28.467 1 64.13 ? C15 FAR 1190 A 1 HETATM 14 C C4 FAR . . . C 3 78.568 -35.444 -26.614 1 87.28 ? C4 FAR 1190 A 1 HETATM 15 C C10 FAR . . . C 3 80.44 -40.134 -25.248 1 63.22 ? C10 FAR 1190 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 15 #