data_5FR2 # _model_server_result.job_id i7HcQ3NjQNEjESdqW7NpwQ _model_server_result.datetime_utc '2024-10-11 06:16:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5fr2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1206}' # _entry.id 5FR2 # _exptl.entry_id 5FR2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 6 _entity.src_method man _entity.type non-polymer _entity.pdbx_description beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5FR2 _cell.length_a 176.979 _cell.length_b 176.979 _cell.length_c 63.896 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5FR2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 171 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 62' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 192 A CYS 190 1_555 C C1 FAR . A FAR 1190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.826 ? covale ? covale2 B C ILE 186 B ILE 177 1_555 B N ALY 187 B ALY 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 B C ALY 187 B ALY 178 1_555 B N SER 188 B SER 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? metalc ? metalc1 A OG1 THR 21 A THR 19 1_555 E MG MG . A MG 1193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? metalc ? metalc2 A O THR 39 A THR 37 1_555 E MG MG . A MG 1193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc3 D O3B GDP . A GDP 1192 1_555 E MG MG . A MG 1193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc4 E MG MG . A MG 1193 1_555 G O HOH . A HOH 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id BGC _chem_comp.mon_nstd_flag . _chem_comp.name beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms beta-D-glucose;D-glucose;glucose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C3 BGC sing 98 n n C2 C1 BGC sing 99 n n C2 O2 BGC sing 100 n n C2 H2 BGC sing 101 n n C3 C4 BGC sing 102 n n C3 O3 BGC sing 103 n n C3 H3 BGC sing 104 n n C4 C5 BGC sing 105 n n C4 O4 BGC sing 106 n n C4 H4 BGC sing 107 n n C5 C6 BGC sing 108 n n C5 O5 BGC sing 109 n n C5 H5 BGC sing 110 n n C6 O6 BGC sing 111 n n C6 H61 BGC sing 112 n n C6 H62 BGC sing 113 n n C1 O1 BGC sing 114 n n C1 O5 BGC sing 115 n n C1 H1 BGC sing 116 n n O1 HO1 BGC sing 117 n n O2 HO2 BGC sing 118 n n O3 HO3 BGC sing 119 n n O4 HO4 BGC sing 120 n n O6 HO6 BGC sing 121 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version BGC DGlcpb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 BGC b-D-glucopyranose 'COMMON NAME' GMML 1 BGC b-D-Glcp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 BGC Glc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 5FR2 _atom_sites.fract_transf_matrix[1][1] 0.00565 _atom_sites.fract_transf_matrix[1][2] 0.003262 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006525 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01565 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 FAR A 1 1190 1190 FAR FAR . D 4 GDP A 1 1192 1192 GDP GDP . E 5 MG A 1 1193 1193 MG MG . F 6 BGC B 1 1206 1206 BGC BGC . G 7 HOH A 1 2001 2001 HOH HOH . G 7 HOH A 2 2002 2002 HOH HOH . G 7 HOH A 3 2003 2003 HOH HOH . G 7 HOH A 4 2004 2004 HOH HOH . G 7 HOH A 5 2005 2005 HOH HOH . G 7 HOH A 6 2006 2006 HOH HOH . G 7 HOH A 7 2007 2007 HOH HOH . G 7 HOH A 8 2008 2008 HOH HOH . G 7 HOH A 9 2009 2009 HOH HOH . G 7 HOH A 10 2010 2010 HOH HOH . G 7 HOH A 11 2011 2011 HOH HOH . H 7 HOH B 1 2001 2001 HOH HOH . H 7 HOH B 2 2002 2002 HOH HOH . H 7 HOH B 3 2003 2003 HOH HOH . H 7 HOH B 4 2004 2004 HOH HOH . H 7 HOH B 5 2005 2005 HOH HOH . H 7 HOH B 6 2006 2006 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 BGC . . . F 6 86.304 -55.832 -5.736 1 80.01 ? C2 BGC 1206 B 1 HETATM 2 C C3 BGC . . . F 6 87.382 -56.373 -6.617 1 77.55 ? C3 BGC 1206 B 1 HETATM 3 C C4 BGC . . . F 6 87.046 -56.334 -8.054 1 75.58 ? C4 BGC 1206 B 1 HETATM 4 C C5 BGC . . . F 6 86.594 -54.979 -8.506 1 75.9 ? C5 BGC 1206 B 1 HETATM 5 C C6 BGC . . . F 6 86.223 -55.004 -9.985 1 76.66 ? C6 BGC 1206 B 1 HETATM 6 C C1 BGC . . . F 6 85.734 -54.455 -6.218 1 78.4 ? C1 BGC 1206 B 1 HETATM 7 O O1 BGC . . . F 6 84.661 -54.165 -5.559 1 79.91 ? O1 BGC 1206 B 1 HETATM 8 O O2 BGC . . . F 6 86.831 -55.647 -4.419 1 83.27 ? O2 BGC 1206 B 1 HETATM 9 O O3 BGC . . . F 6 87.631 -57.77 -6.247 1 77.6 ? O3 BGC 1206 B 1 HETATM 10 O O4 BGC . . . F 6 88.24 -56.749 -8.822 1 75.48 ? O4 BGC 1206 B 1 HETATM 11 O O5 BGC . . . F 6 85.423 -54.566 -7.729 1 74.88 ? O5 BGC 1206 B 1 HETATM 12 O O6 BGC . . . F 6 87.135 -54.254 -10.752 1 75.01 ? O6 BGC 1206 B 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 12 #