data_5FRB # _model_server_result.job_id gMb9aY0AKKanQYyfgsUw6A _model_server_result.datetime_utc '2024-10-13 01:18:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5frb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":590}' # _entry.id 5FRB # _exptl.entry_id 5FRB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 586.539 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (R)-4-((4-((6-(2-(2,4-difluorophenyl)-1,1-difluoro-2-hydroxy-3-(1H-tetrazol-1-yl)propyl)pyridin-3-yl)ethynyl)phenoxy)methyl)benzonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5FRB _cell.length_a 109.857 _cell.length_b 109.857 _cell.length_c 84.838 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5FRB _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 417 A CYS 463 1_555 B FE HEM . A HEM 580 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc2 B FE HEM . A HEM 580 1_555 C NBA VT2 . A VT2 590 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? # _chem_comp.formula 'C31 H22 F4 N6 O2' _chem_comp.formula_weight 586.539 _chem_comp.id VT2 _chem_comp.mon_nstd_flag . _chem_comp.name (R)-4-((4-((6-(2-(2,4-difluorophenyl)-1,1-difluoro-2-hydroxy-3-(1H-tetrazol-1-yl)propyl)pyridin-3-yl)ethynyl)phenoxy)methyl)benzonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag NAA CAG VT2 trip 456 n n OAB CBQ VT2 sing 457 n n FAC CBF VT2 sing 458 n n FAD CBJ VT2 sing 459 n n FAE CBP VT2 sing 460 n n FAF CBP VT2 sing 461 n n CAG CBG VT2 sing 462 n n CAH CAI VT2 doub 463 e n CAH CBH VT2 sing 464 n n CAI CBI VT2 sing 465 n n CAJ CAU VT2 doub 466 n y CAJ CBF VT2 sing 467 n y CAK CAP VT2 doub 468 n y CAK CBG VT2 sing 469 n y CAL CAQ VT2 sing 470 n y CAL CBG VT2 doub 471 n y CAM CAR VT2 doub 472 n y CAM CBH VT2 sing 473 n y CAN CAS VT2 sing 474 n y CAN CBH VT2 doub 475 n y CAO CAT VT2 doub 476 n y CAO CBI VT2 sing 477 n y CAP CBK VT2 sing 478 n y CAQ CBK VT2 doub 479 n y CAR CBL VT2 sing 480 n y CAS CBL VT2 doub 481 n y CAT CBM VT2 sing 482 n y CAU CBN VT2 sing 483 n y CAV NBB VT2 sing 484 n y CAV CBI VT2 doub 485 n y CAW NBA VT2 doub 486 n y CAW NBO VT2 sing 487 n y CAX CBF VT2 doub 488 n y CAX CBJ VT2 sing 489 n y CAY OBE VT2 sing 490 n n CAY CBK VT2 sing 491 n n CAZ NBO VT2 sing 492 n n CAZ CBQ VT2 sing 493 n n NBA NBC VT2 sing 494 n y NBB CBM VT2 doub 495 n y NBC NBD VT2 doub 496 n y NBD NBO VT2 sing 497 n y OBE CBL VT2 sing 498 n n CBJ CBN VT2 doub 499 n y CBM CBP VT2 sing 500 n n CBN CBQ VT2 sing 501 n n CBP CBQ VT2 sing 502 n n OAB HOAB VT2 sing 503 n n CAH HAH VT2 sing 504 n n CAI HAI VT2 sing 505 n n CAJ HAJ VT2 sing 506 n n CAK HAK VT2 sing 507 n n CAL HAL VT2 sing 508 n n CAM HAM VT2 sing 509 n n CAN HAN VT2 sing 510 n n CAO HAO VT2 sing 511 n n CAP HAP VT2 sing 512 n n CAQ HAQ VT2 sing 513 n n CAR HAR VT2 sing 514 n n CAS HAS VT2 sing 515 n n CAT HAT VT2 sing 516 n n CAU HAU VT2 sing 517 n n CAV HAV VT2 sing 518 n n CAW HAW VT2 sing 519 n n CAX HAX VT2 sing 520 n n CAY HAY VT2 sing 521 n n CAY HAYA VT2 sing 522 n n CAZ HAZ VT2 sing 523 n n CAZ HAZA VT2 sing 524 n n # _atom_sites.entry_id 5FRB _atom_sites.fract_transf_matrix[1][1] 0.009103 _atom_sites.fract_transf_matrix[1][2] 0.005255 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010511 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011787 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 580 580 HEM HEM . C 3 VT2 A 1 590 590 VT2 VT2 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N NAA VT2 . . . C 3 312.609 12.851 13.556 1 144.26 ? NAA VT2 590 A 1 HETATM 2 O OAB VT2 . . . C 3 293.579 9.807 9.842 1 163.28 ? OAB VT2 590 A 1 HETATM 3 F FAC VT2 . . . C 3 288.687 9.397 13.504 1 118.62 ? FAC VT2 590 A 1 HETATM 4 F FAD VT2 . . . C 3 292.794 11.806 13.319 1 199.49 ? FAD VT2 590 A 1 HETATM 5 F FAE VT2 . . . C 3 294.258 7.929 11.62 1 157.89 ? FAE VT2 590 A 1 HETATM 6 F FAF VT2 . . . C 3 294.542 9.352 13.234 1 146.44 ? FAF VT2 590 A 1 HETATM 7 C CAG VT2 . . . C 3 311.635 12.484 13.081 1 136.88 ? CAG VT2 590 A 1 HETATM 8 C CAH VT2 . . . C 3 300.81 10.416 10.411 1 123.89 ? CAH VT2 590 A 1 HETATM 9 C CAI VT2 . . . C 3 299.821 10.155 10.514 1 121.1 ? CAI VT2 590 A 1 HETATM 10 C CAJ VT2 . . . C 3 290.345 8.777 11.914 1 117.27 ? CAJ VT2 590 A 1 HETATM 11 C CAK VT2 . . . C 3 310.203 10.652 12.338 1 146.07 ? CAK VT2 590 A 1 HETATM 12 C CAL VT2 . . . C 3 309.455 12.922 12.064 1 139.34 ? CAL VT2 590 A 1 HETATM 13 C CAM VT2 . . . C 3 302.531 12.054 10.087 1 160.64 ? CAM VT2 590 A 1 HETATM 14 C CAN VT2 . . . C 3 303.09 9.738 10.514 1 118.22 ? CAN VT2 590 A 1 HETATM 15 C CAO VT2 . . . C 3 298.091 10.195 12.007 1 142.86 ? CAO VT2 590 A 1 HETATM 16 C CAP VT2 . . . C 3 309.021 10.199 11.763 1 139.2 ? CAP VT2 590 A 1 HETATM 17 C CAQ VT2 . . . C 3 308.273 12.468 11.488 1 124.35 ? CAQ VT2 590 A 1 HETATM 18 C CAR VT2 . . . C 3 303.883 12.358 9.986 1 154.4 ? CAR VT2 590 A 1 HETATM 19 C CAS VT2 . . . C 3 304.439 10.047 10.409 1 108.03 ? CAS VT2 590 A 1 HETATM 20 C CAT VT2 . . . C 3 296.785 9.963 12.4 1 139.72 ? CAT VT2 590 A 1 HETATM 21 C CAU VT2 . . . C 3 291.597 8.98 11.35 1 123.85 ? CAU VT2 590 A 1 HETATM 22 C CAV VT2 . . . C 3 297.607 9.294 9.815 1 155.32 ? CAV VT2 590 A 1 HETATM 23 C CAW VT2 . . . C 3 292.934 12.419 9.33 1 153.64 ? CAW VT2 590 A 1 HETATM 24 C CAX VT2 . . . C 3 290.735 10.613 13.421 1 131.35 ? CAX VT2 590 A 1 HETATM 25 C CAY VT2 . . . C 3 306.885 10.616 10.76 1 113.88 ? CAY VT2 590 A 1 HETATM 26 C CAZ VT2 . . . C 3 294.147 11.594 11.35 1 151.7 ? CAZ VT2 590 A 1 HETATM 27 N NBA VT2 . . . C 3 291.853 13.179 9.202 1 150.81 ? NBA VT2 590 A 1 HETATM 28 N NBB VT2 . . . C 3 296.29 9.073 10.242 1 153.27 ? NBB VT2 590 A 1 HETATM 29 N NBC VT2 . . . C 3 291.54 13.475 10.273 1 155.9 ? NBC VT2 590 A 1 HETATM 30 N NBD VT2 . . . C 3 292.256 12.983 11.106 1 170.19 ? NBD VT2 590 A 1 HETATM 31 O OBE VT2 . . . C 3 306.16 11.648 10.08 1 113.96 ? OBE VT2 590 A 1 HETATM 32 C CBF VT2 . . . C 3 289.913 9.595 12.952 1 116.9 ? CBF VT2 590 A 1 HETATM 33 C CBG VT2 . . . C 3 310.42 12.016 12.49 1 142.63 ? CBG VT2 590 A 1 HETATM 34 C CBH VT2 . . . C 3 302.149 10.738 10.312 1 135.13 ? CBH VT2 590 A 1 HETATM 35 C CBI VT2 . . . C 3 298.492 9.867 10.719 1 132.69 ? CBI VT2 590 A 1 HETATM 36 C CBJ VT2 . . . C 3 291.99 10.813 12.858 1 138.32 ? CBJ VT2 590 A 1 HETATM 37 C CBK VT2 . . . C 3 308.056 11.103 11.333 1 127.4 ? CBK VT2 590 A 1 HETATM 38 C CBL VT2 . . . C 3 304.833 11.354 10.147 1 126.67 ? CBL VT2 590 A 1 HETATM 39 C CBM VT2 . . . C 3 295.906 9.401 11.487 1 128.49 ? CBM VT2 590 A 1 HETATM 40 C CBN VT2 . . . C 3 292.41 10.007 11.806 1 126.04 ? CBN VT2 590 A 1 HETATM 41 N NBO VT2 . . . C 3 293.133 12.402 10.64 1 166.64 ? NBO VT2 590 A 1 HETATM 42 C CBP VT2 . . . C 3 294.61 9.174 11.918 1 137.15 ? CBP VT2 590 A 1 HETATM 43 C CBQ VT2 . . . C 3 293.663 10.15 11.227 1 139.41 ? CBQ VT2 590 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 43 #