data_5FRT
#
_model_server_result.job_id            RQiO9lmzGJueLAPfNTDrUg 
_model_server_result.datetime_utc      '2024-10-20 03:31:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5frt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":5000}' 
#
_entry.id    5FRT 
#
_exptl.entry_id    5FRT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              175.82 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FE2/S2 (INORGANIC) CLUSTER' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5FRT 
_cell.length_a            133.56 
_cell.length_b            134.53 
_cell.length_c            36.6 
_cell.Z_PDB               20 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5FRT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
C,D,H,I,M,N 1 1 
A,F,K 2 1 
B,G,L 2 2 
B,G,L 3 1 
A,F,K 3 3 
E,J,O 4 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 1_554 x,y,z-1 1 0 0 0 1 0 0 0 1 0 0 -36.6 
3 'crystal symmetry operation' 1_556 x,y,z+1 1 0 0 0 1 0 0 0 1 0 0 36.6 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 42 A CYS 42 1_555 F FE2 FES . A FES 5000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? 
metalc ? metalc2 A SG CYS 47 A CYS 47 1_555 F FE2 FES . A FES 5000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? 
metalc ? metalc3 A SG CYS 50 A CYS 50 1_555 F FE1 FES . A FES 5000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? 
metalc ? metalc4 A SG CYS 102 A CYS 102 1_555 F FE1 FES . A FES 5000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? 
metalc ? metalc5 B SG CYS 42 B CYS 42 1_555 G FE2 FES . B FES 5000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? 
metalc ? metalc6 B SG CYS 47 B CYS 47 1_555 G FE2 FES . B FES 5000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? 
metalc ? metalc7 B SG CYS 50 B CYS 50 1_555 G FE1 FES . B FES 5000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? 
metalc ? metalc8 B SG CYS 102 B CYS 102 1_555 G FE1 FES . B FES 5000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? 
metalc ? metalc9 C SG CYS 42 C CYS 42 1_555 H FE2 FES . C FES 5000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? 
metalc ? metalc10 C SG CYS 47 C CYS 47 1_555 H FE2 FES . C FES 5000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? 
metalc ? metalc11 C SG CYS 50 C CYS 50 1_555 H FE1 FES . C FES 5000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? 
metalc ? metalc12 C SG CYS 102 C CYS 102 1_555 H FE1 FES . C FES 5000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? 
metalc ? metalc13 D SG CYS 42 D CYS 42 1_555 I FE2 FES . D FES 5000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? 
metalc ? metalc14 D SG CYS 47 D CYS 47 1_555 I FE2 FES . D FES 5000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? 
metalc ? metalc15 D SG CYS 50 D CYS 50 1_555 I FE1 FES . D FES 5000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? 
metalc ? metalc16 D SG CYS 102 D CYS 102 1_555 I FE1 FES . D FES 5000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? 
metalc ? metalc17 E SG CYS 42 E CYS 42 1_555 J FE2 FES . E FES 5000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? 
metalc ? metalc18 E SG CYS 47 E CYS 47 1_555 J FE2 FES . E FES 5000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? 
metalc ? metalc19 E SG CYS 50 E CYS 50 1_555 J FE1 FES . E FES 5000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? 
metalc ? metalc20 E SG CYS 102 E CYS 102 1_555 J FE1 FES . E FES 5000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? 
#
_chem_comp.formula           'Fe2 S2' 
_chem_comp.formula_weight    175.82 
_chem_comp.id                FES 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FE2/S2 (INORGANIC) CLUSTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
FE1 S1 FES sing 83 n n 
FE1 S2 FES sing 84 n n 
FE2 S1 FES sing 85 n n 
FE2 S2 FES sing 86 n n 
#
_atom_sites.entry_id                     5FRT 
_atom_sites.fract_transf_matrix[1][1]    0.007487 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007433 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.027322 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 FES A 1 5000 5000 FES FES . 
G 2 FES B 1 5000 5000 FES FES . 
H 2 FES C 1 5000 5000 FES FES . 
I 2 FES D 1 5000 5000 FES FES . 
J 2 FES E 1 5000 5000 FES FES . 
K 3 HOH A 1 2001 2001 HOH HOH . 
K 3 HOH A 2 2002 2002 HOH HOH . 
K 3 HOH A 3 2003 2003 HOH HOH . 
K 3 HOH A 4 2004 2004 HOH HOH . 
K 3 HOH A 5 2005 2005 HOH HOH . 
K 3 HOH A 6 2006 2006 HOH HOH . 
K 3 HOH A 7 2007 2007 HOH HOH . 
K 3 HOH A 8 2008 2008 HOH HOH . 
K 3 HOH A 9 2009 2009 HOH HOH . 
K 3 HOH A 10 2010 2010 HOH HOH . 
K 3 HOH A 11 2011 2011 HOH HOH . 
K 3 HOH A 12 2012 2012 HOH HOH . 
K 3 HOH A 13 2013 2013 HOH HOH . 
K 3 HOH A 14 2014 2014 HOH HOH . 
K 3 HOH A 15 2015 2015 HOH HOH . 
K 3 HOH A 16 2016 2016 HOH HOH . 
K 3 HOH A 17 2017 2017 HOH HOH . 
K 3 HOH A 18 2018 2018 HOH HOH . 
L 3 HOH B 1 2001 2001 HOH HOH . 
L 3 HOH B 2 2002 2002 HOH HOH . 
L 3 HOH B 3 2003 2003 HOH HOH . 
L 3 HOH B 4 2004 2004 HOH HOH . 
L 3 HOH B 5 2005 2005 HOH HOH . 
L 3 HOH B 6 2006 2006 HOH HOH . 
L 3 HOH B 7 2007 2007 HOH HOH . 
L 3 HOH B 8 2008 2008 HOH HOH . 
L 3 HOH B 9 2009 2009 HOH HOH . 
L 3 HOH B 10 2010 2010 HOH HOH . 
L 3 HOH B 11 2011 2011 HOH HOH . 
L 3 HOH B 12 2012 2012 HOH HOH . 
M 3 HOH C 1 2001 2001 HOH HOH . 
M 3 HOH C 2 2002 2002 HOH HOH . 
M 3 HOH C 3 2003 2003 HOH HOH . 
M 3 HOH C 4 2004 2004 HOH HOH . 
M 3 HOH C 5 2005 2005 HOH HOH . 
N 3 HOH D 1 2001 2001 HOH HOH . 
N 3 HOH D 2 2002 2002 HOH HOH . 
N 3 HOH D 3 2003 2003 HOH HOH . 
N 3 HOH D 4 2004 2004 HOH HOH . 
N 3 HOH D 5 2005 2005 HOH HOH . 
N 3 HOH D 6 2006 2006 HOH HOH . 
N 3 HOH D 7 2007 2007 HOH HOH . 
N 3 HOH D 8 2008 2008 HOH HOH . 
N 3 HOH D 9 2009 2009 HOH HOH . 
N 3 HOH D 10 2010 2010 HOH HOH . 
O 3 HOH E 1 2001 2001 HOH HOH . 
O 3 HOH E 2 2002 2002 HOH HOH . 
O 3 HOH E 3 2003 2003 HOH HOH . 
O 3 HOH E 4 2004 2004 HOH HOH . 
O 3 HOH E 5 2005 2005 HOH HOH . 
O 3 HOH E 6 2006 2006 HOH HOH . 
O 3 HOH E 7 2007 2007 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 FE FE1 FES . . . F 2 10.936 -41.803 -8.176 1 47.53 ? FE1 FES 5000 A 1 
HETATM 2 FE FE2 FES . . . F 2 8.156 -42.864 -8.024 1 54.9 ? FE2 FES 5000 A 1 
HETATM 3 S S1 FES . . . F 2 9.081 -41.263 -9.183 1 47.07 ? S1 FES 5000 A 1 
HETATM 4 S S2 FES . . . F 2 9.98 -43.252 -6.856 1 50.24 ? S2 FES 5000 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           282 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           4 
#