data_5FRX # _model_server_result.job_id oGzXSWQEo4gfFLd-oBnSOA _model_server_result.datetime_utc '2024-11-29 09:16:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5frx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1210}' # _entry.id 5FRX # _exptl.entry_id 5FRX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 139.109 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description P-NITROPHENOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5FRX _cell.length_a 46.241 _cell.length_b 70.47 _cell.length_c 105.236 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5FRX _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 151 A CYS 151 1_555 C ZN ZN . A ZN 1209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc2 A OE1 GLU 174 A GLU 174 1_555 C ZN ZN . A ZN 1209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? metalc ? metalc3 A SG CYS 177 A CYS 177 1_555 C ZN ZN . A ZN 1209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.498 ? metalc ? metalc4 A SG CYS 185 A CYS 185 1_555 C ZN ZN . A ZN 1209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc5 B SG CYS 151 B CYS 151 1_555 E ZN ZN . B ZN 1209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.498 ? metalc ? metalc6 B OE2 GLU 174 B GLU 174 1_555 E ZN ZN . B ZN 1209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc7 B SG CYS 177 B CYS 177 1_555 E ZN ZN . B ZN 1209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? metalc ? metalc8 B SG CYS 185 B CYS 185 1_555 E ZN ZN . B ZN 1209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc9 E ZN ZN . B ZN 1209 1_555 H O HOH . B HOH 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.918 ? # _chem_comp.formula 'C6 H5 N O3' _chem_comp.formula_weight 139.109 _chem_comp.id NPO _chem_comp.mon_nstd_flag . _chem_comp.name P-NITROPHENOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NPO doub 237 n y C1 C6 NPO sing 238 n y C1 N1 NPO sing 239 n n C2 C3 NPO sing 240 n y C2 H2 NPO sing 241 n n C3 C4 NPO doub 242 n y C3 H3 NPO sing 243 n n C4 C5 NPO sing 244 n y C4 OH NPO sing 245 n n C5 C6 NPO doub 246 n y C5 H5 NPO sing 247 n n C6 H6 NPO sing 248 n n OH HO NPO sing 249 n n N1 O2 NPO sing 250 n n N1 O3 NPO doub 251 n n # _atom_sites.entry_id 5FRX _atom_sites.fract_transf_matrix[1][1] 0.021626 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01419 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009502 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 1209 1209 ZN ZN . D 3 NPO A 1 1210 1210 NPO NPO . E 2 ZN B 1 1209 1209 ZN ZN . F 3 NPO B 1 1210 1210 NPO NPO . G 4 HOH A 1 2001 2001 HOH HOH . G 4 HOH A 2 2002 2002 HOH HOH . G 4 HOH A 3 2003 2003 HOH HOH . G 4 HOH A 4 2004 2004 HOH HOH . G 4 HOH A 5 2005 2005 HOH HOH . G 4 HOH A 6 2006 2006 HOH HOH . G 4 HOH A 7 2007 2007 HOH HOH . G 4 HOH A 8 2008 2008 HOH HOH . G 4 HOH A 9 2009 2009 HOH HOH . G 4 HOH A 10 2010 2010 HOH HOH . G 4 HOH A 11 2011 2011 HOH HOH . H 4 HOH B 1 2001 2001 HOH HOH . H 4 HOH B 2 2002 2002 HOH HOH . H 4 HOH B 3 2003 2003 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NPO . . . D 3 -23.447 17.132 -23.156 1 44.71 ? C1 NPO 1210 A 1 HETATM 2 C C2 NPO . . . D 3 -23.249 18.388 -22.628 1 38.78 ? C2 NPO 1210 A 1 HETATM 3 C C3 NPO . . . D 3 -22.921 18.526 -21.299 1 47.02 ? C3 NPO 1210 A 1 HETATM 4 C C4 NPO . . . D 3 -22.789 17.406 -20.495 1 43.43 ? C4 NPO 1210 A 1 HETATM 5 C C5 NPO . . . D 3 -22.991 16.141 -21.016 1 43.09 ? C5 NPO 1210 A 1 HETATM 6 C C6 NPO . . . D 3 -23.311 16.002 -22.36 1 42.52 ? C6 NPO 1210 A 1 HETATM 7 O OH NPO . . . D 3 -22.46 17.572 -19.15 1 40.54 ? OH NPO 1210 A 1 HETATM 8 N N1 NPO . . . D 3 -23.767 17.012 -24.541 1 51.19 1 N1 NPO 1210 A 1 HETATM 9 O O2 NPO . . . D 3 -23.599 15.803 -25.15 1 45.65 -1 O2 NPO 1210 A 1 HETATM 10 O O3 NPO . . . D 3 -24.135 17.988 -25.199 1 49.88 ? O3 NPO 1210 A 1 HETATM 11 H H2 NPO . . . D 3 -23.336 19.177 -23.196 1 46.54 ? H2 NPO 1210 A 1 HETATM 12 H H3 NPO . . . D 3 -22.782 19.415 -20.922 1 56.42 ? H3 NPO 1210 A 1 HETATM 13 H H5 NPO . . . D 3 -22.895 15.353 -20.448 1 51.7 ? H5 NPO 1210 A 1 HETATM 14 H H6 NPO . . . D 3 -23.452 15.115 -22.74 1 51.03 ? H6 NPO 1210 A 1 HETATM 15 H HO NPO . . . D 3 -23.19 17.793 -18.692 1 48.65 ? HO NPO 1210 A 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 15 #