data_5FRY # _model_server_result.job_id f-rOoZaj9ZqAdlmdoEv6wg _model_server_result.datetime_utc '2024-11-08 05:39:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5fry # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1209}' # _entry.id 5FRY # _exptl.entry_id 5FRY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.164 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3,4-DIMETHYLPHENOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5FRY _cell.length_a 46.73 _cell.length_b 70.696 _cell.length_c 105.141 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5FRY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C8 H10 O' _chem_comp.formula_weight 122.164 _chem_comp.id ERH _chem_comp.mon_nstd_flag . _chem_comp.name 3,4-DIMETHYLPHENOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O01 C07 ERH sing 83 n n C02 C04 ERH sing 84 n y C02 C05 ERH doub 85 n y C02 C08 ERH sing 86 n n C03 C04 ERH doub 87 n y C03 C06 ERH sing 88 n y C03 C09 ERH sing 89 n n C05 C07 ERH sing 90 n y C06 C07 ERH doub 91 n y O01 H01 ERH sing 92 n n C04 H04 ERH sing 93 n n C05 H05 ERH sing 94 n n C08 H081 ERH sing 95 n n C08 H082 ERH sing 96 n n C08 H083 ERH sing 97 n n C06 H06 ERH sing 98 n n C09 H091 ERH sing 99 n n C09 H092 ERH sing 100 n n C09 H093 ERH sing 101 n n # _atom_sites.entry_id 5FRY _atom_sites.fract_transf_matrix[1][1] 0.0214 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014145 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009511 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 1208 1208 ZN ZN . D 3 ERH A 1 1209 1209 ERH ERH . E 2 ZN B 1 1208 1208 ZN ZN . F 3 ERH B 1 1209 1209 ERH ERH . G 4 HOH A 1 2001 2001 HOH HOH . G 4 HOH A 2 2002 2002 HOH HOH . G 4 HOH A 3 2003 2003 HOH HOH . G 4 HOH A 4 2004 2004 HOH HOH . G 4 HOH A 5 2005 2005 HOH HOH . G 4 HOH A 6 2006 2006 HOH HOH . G 4 HOH A 7 2007 2007 HOH HOH . G 4 HOH A 8 2008 2008 HOH HOH . G 4 HOH A 9 2009 2009 HOH HOH . G 4 HOH A 10 2010 2010 HOH HOH . G 4 HOH A 11 2011 2011 HOH HOH . G 4 HOH A 12 2012 2012 HOH HOH . G 4 HOH A 13 2013 2013 HOH HOH . G 4 HOH A 14 2014 2014 HOH HOH . G 4 HOH A 15 2015 2015 HOH HOH . G 4 HOH A 16 2016 2016 HOH HOH . G 4 HOH A 17 2017 2017 HOH HOH . G 4 HOH A 18 2018 2018 HOH HOH . G 4 HOH A 19 2019 2019 HOH HOH . G 4 HOH A 20 2020 2020 HOH HOH . G 4 HOH A 21 2021 2021 HOH HOH . G 4 HOH A 22 2022 2022 HOH HOH . G 4 HOH A 23 2023 2023 HOH HOH . G 4 HOH A 24 2024 2024 HOH HOH . G 4 HOH A 25 2025 2025 HOH HOH . G 4 HOH A 26 2026 2026 HOH HOH . G 4 HOH A 27 2027 2027 HOH HOH . G 4 HOH A 28 2028 2028 HOH HOH . G 4 HOH A 29 2029 2029 HOH HOH . G 4 HOH A 30 2030 2030 HOH HOH . G 4 HOH A 31 2031 2031 HOH HOH . G 4 HOH A 32 2032 2032 HOH HOH . G 4 HOH A 33 2033 2033 HOH HOH . G 4 HOH A 34 2034 2034 HOH HOH . G 4 HOH A 35 2035 2035 HOH HOH . G 4 HOH A 36 2036 2036 HOH HOH . G 4 HOH A 37 2037 2037 HOH HOH . G 4 HOH A 38 2038 2038 HOH HOH . H 4 HOH B 1 2001 2001 HOH HOH . H 4 HOH B 2 2002 2002 HOH HOH . H 4 HOH B 3 2003 2003 HOH HOH . H 4 HOH B 4 2004 2004 HOH HOH . H 4 HOH B 5 2005 2005 HOH HOH . H 4 HOH B 6 2006 2006 HOH HOH . H 4 HOH B 7 2007 2007 HOH HOH . H 4 HOH B 8 2008 2008 HOH HOH . H 4 HOH B 9 2009 2009 HOH HOH . H 4 HOH B 10 2010 2010 HOH HOH . H 4 HOH B 11 2011 2011 HOH HOH . H 4 HOH B 12 2012 2012 HOH HOH . H 4 HOH B 13 2013 2013 HOH HOH . H 4 HOH B 14 2014 2014 HOH HOH . H 4 HOH B 15 2015 2015 HOH HOH . H 4 HOH B 16 2016 2016 HOH HOH . H 4 HOH B 17 2017 2017 HOH HOH . H 4 HOH B 18 2018 2018 HOH HOH . H 4 HOH B 19 2019 2019 HOH HOH . H 4 HOH B 20 2020 2020 HOH HOH . H 4 HOH B 21 2021 2021 HOH HOH . H 4 HOH B 22 2022 2022 HOH HOH . H 4 HOH B 23 2023 2023 HOH HOH . H 4 HOH B 24 2024 2024 HOH HOH . H 4 HOH B 25 2025 2025 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O01 ERH . . . D 3 -22.294 17.007 -19.177 1 33.33 ? O01 ERH 1209 A 1 HETATM 2 C C02 ERH . . . D 3 -23.385 18.763 -22.34 1 38.02 ? C02 ERH 1209 A 1 HETATM 3 C C03 ERH . . . D 3 -22.881 16.386 -22.826 1 39.04 ? C03 ERH 1209 A 1 HETATM 4 C C04 ERH . . . D 3 -23.319 17.771 -23.249 1 40.55 ? C04 ERH 1209 A 1 HETATM 5 C C05 ERH . . . D 3 -23.022 18.493 -20.896 1 34.71 ? C05 ERH 1209 A 1 HETATM 6 C C06 ERH . . . D 3 -22.557 16.144 -21.54 1 37.1 ? C06 ERH 1209 A 1 HETATM 7 C C07 ERH . . . D 3 -22.632 17.259 -20.52 1 37.84 ? C07 ERH 1209 A 1 HETATM 8 C C08 ERH . . . D 3 -23.823 20.149 -22.762 1 40.86 ? C08 ERH 1209 A 1 HETATM 9 C C09 ERH . . . D 3 -22.806 15.271 -23.847 1 38.61 ? C09 ERH 1209 A 1 HETATM 10 H H01 ERH . . . D 3 -22.931 16.519 -18.798 1 39.99 ? H01 ERH 1209 A 1 HETATM 11 H H04 ERH . . . D 3 -23.553 17.945 -24.18 1 48.65 ? H04 ERH 1209 A 1 HETATM 12 H H05 ERH . . . D 3 -23.07 19.212 -20.238 1 41.65 ? H05 ERH 1209 A 1 HETATM 13 H H081 ERH . . . D 3 -24.605 20.08 -23.342 1 49.03 ? H081 ERH 1209 A 1 HETATM 14 H H082 ERH . . . D 3 -23.097 20.586 -23.246 1 49.03 ? H082 ERH 1209 A 1 HETATM 15 H H083 ERH . . . D 3 -24.05 20.674 -21.972 1 49.03 ? H083 ERH 1209 A 1 HETATM 16 H H06 ERH . . . D 3 -22.274 15.251 -21.268 1 44.52 ? H06 ERH 1209 A 1 HETATM 17 H H091 ERH . . . D 3 -23.696 14.894 -23.982 1 46.33 ? H091 ERH 1209 A 1 HETATM 18 H H092 ERH . . . D 3 -22.471 15.626 -24.692 1 46.33 ? H092 ERH 1209 A 1 HETATM 19 H H093 ERH . . . D 3 -22.203 14.575 -23.525 1 46.33 ? H093 ERH 1209 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 238 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 19 #