data_5FSH # _model_server_result.job_id mGjgtZLOTLeLBIN7vSyqog _model_server_result.datetime_utc '2024-11-05 00:34:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5fsh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1467}' # _entry.id 5FSH # _exptl.entry_id 5FSH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5FSH _cell.length_a 95.309 _cell.length_b 207.07 _cell.length_c 58.903 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5FSH _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 2 A ASN -1 1_555 C NI NI . A NI 1465 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc2 A OD2 ASP 6 A ASP 3 1_555 C NI NI . A NI 1465 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? metalc ? metalc3 A NE2 HIS 191 A HIS 188 1_555 E NI NI . A NI 1467 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.995 ? metalc ? metalc4 A OD1 ASP 198 A ASP 195 1_555 E NI NI . A NI 1467 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? metalc ? metalc5 A OE2 GLU 210 A GLU 207 1_555 G NI NI . A NI 1469 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? metalc ? metalc6 A NE2 HIS 313 A HIS 310 1_555 F NI NI . A NI 1468 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? metalc ? metalc7 A OE2 GLU 317 A GLU 314 1_555 F NI NI . A NI 1468 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? metalc ? metalc8 A OD1 ASN 419 A ASN 416 1_555 D NI NI . A NI 1466 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc9 A NE2 HIS 425 A HIS 422 1_555 D NI NI . A NI 1466 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? metalc ? metalc10 C NI NI . A NI 1465 1_555 I O HOH . A HOH 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.622 ? metalc ? metalc11 C NI NI . A NI 1465 1_555 B NE2 HIS 191 B HIS 188 1_556 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? metalc ? metalc12 C NI NI . A NI 1465 1_555 B OD2 ASP 198 B ASP 195 1_556 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? metalc ? metalc13 C NI NI . A NI 1465 1_555 B OD1 ASP 198 B ASP 195 1_556 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? metalc ? metalc14 D NI NI . A NI 1466 1_555 B OD1 ASN 419 B ASN 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc15 D NI NI . A NI 1466 1_555 B NE2 HIS 425 B HIS 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc16 F NI NI . A NI 1468 1_555 I O HOH . A HOH 2035 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc17 G NI NI . A NI 1469 1_555 B OE2 GLU 210 B GLU 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? metalc ? metalc18 B NE2 HIS 313 B HIS 310 1_555 H NI NI . B NI 1465 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc19 B OE2 GLU 317 B GLU 314 1_555 H NI NI . B NI 1465 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc20 B OE2 GLU 461 B GLU 458 1_555 H NI NI . B NI 1465 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5FSH _atom_sites.fract_transf_matrix[1][1] 0.010492 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004829 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016977 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NI A 1 1465 1465 NI NI . D 2 NI A 1 1466 1466 NI NI . E 2 NI A 1 1467 1467 NI NI . F 2 NI A 1 1468 1468 NI NI . G 2 NI A 1 1469 1469 NI NI . H 2 NI B 1 1465 1465 NI NI . I 3 HOH A 1 2001 2001 HOH HOH . I 3 HOH A 2 2002 2002 HOH HOH . I 3 HOH A 3 2003 2003 HOH HOH . I 3 HOH A 4 2004 2004 HOH HOH . I 3 HOH A 5 2005 2005 HOH HOH . I 3 HOH A 6 2006 2006 HOH HOH . I 3 HOH A 7 2007 2007 HOH HOH . I 3 HOH A 8 2008 2008 HOH HOH . I 3 HOH A 9 2009 2009 HOH HOH . I 3 HOH A 10 2010 2010 HOH HOH . I 3 HOH A 11 2011 2011 HOH HOH . I 3 HOH A 12 2012 2012 HOH HOH . I 3 HOH A 13 2013 2013 HOH HOH . I 3 HOH A 14 2014 2014 HOH HOH . I 3 HOH A 15 2015 2015 HOH HOH . I 3 HOH A 16 2016 2016 HOH HOH . I 3 HOH A 17 2017 2017 HOH HOH . I 3 HOH A 18 2018 2018 HOH HOH . I 3 HOH A 19 2019 2019 HOH HOH . I 3 HOH A 20 2020 2020 HOH HOH . I 3 HOH A 21 2021 2021 HOH HOH . I 3 HOH A 22 2022 2022 HOH HOH . I 3 HOH A 23 2023 2023 HOH HOH . I 3 HOH A 24 2024 2024 HOH HOH . I 3 HOH A 25 2025 2025 HOH HOH . I 3 HOH A 26 2026 2026 HOH HOH . I 3 HOH A 27 2027 2027 HOH HOH . I 3 HOH A 28 2028 2028 HOH HOH . I 3 HOH A 29 2029 2029 HOH HOH . I 3 HOH A 30 2030 2030 HOH HOH . I 3 HOH A 31 2031 2031 HOH HOH . I 3 HOH A 32 2032 2032 HOH HOH . I 3 HOH A 33 2033 2033 HOH HOH . I 3 HOH A 34 2034 2034 HOH HOH . I 3 HOH A 35 2035 2035 HOH HOH . I 3 HOH A 36 2036 2036 HOH HOH . I 3 HOH A 37 2037 2037 HOH HOH . I 3 HOH A 38 2038 2038 HOH HOH . I 3 HOH A 39 2039 2039 HOH HOH . J 3 HOH B 1 2001 2001 HOH HOH . J 3 HOH B 2 2002 2002 HOH HOH . J 3 HOH B 3 2003 2003 HOH HOH . J 3 HOH B 4 2004 2004 HOH HOH . J 3 HOH B 5 2005 2005 HOH HOH . J 3 HOH B 6 2006 2006 HOH HOH . J 3 HOH B 7 2007 2007 HOH HOH . J 3 HOH B 8 2008 2008 HOH HOH . J 3 HOH B 9 2009 2009 HOH HOH . J 3 HOH B 10 2010 2010 HOH HOH . J 3 HOH B 11 2011 2011 HOH HOH . J 3 HOH B 12 2012 2012 HOH HOH . J 3 HOH B 13 2013 2013 HOH HOH . J 3 HOH B 14 2014 2014 HOH HOH . J 3 HOH B 15 2015 2015 HOH HOH . J 3 HOH B 16 2016 2016 HOH HOH . J 3 HOH B 17 2017 2017 HOH HOH . J 3 HOH B 18 2018 2018 HOH HOH . J 3 HOH B 19 2019 2019 HOH HOH . J 3 HOH B 20 2020 2020 HOH HOH . J 3 HOH B 21 2021 2021 HOH HOH . J 3 HOH B 22 2022 2022 HOH HOH . J 3 HOH B 23 2023 2023 HOH HOH . J 3 HOH B 24 2024 2024 HOH HOH . J 3 HOH B 25 2025 2025 HOH HOH . J 3 HOH B 26 2026 2026 HOH HOH . J 3 HOH B 27 2027 2027 HOH HOH . J 3 HOH B 28 2028 2028 HOH HOH . J 3 HOH B 29 2029 2029 HOH HOH . J 3 HOH B 30 2030 2030 HOH HOH . J 3 HOH B 31 2031 2031 HOH HOH . J 3 HOH B 32 2032 2032 HOH HOH . J 3 HOH B 33 2033 2033 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 2 _atom_site.Cartn_x 26.336 _atom_site.Cartn_y 19.056 _atom_site.Cartn_z 31.858 _atom_site.occupancy 0.28 _atom_site.B_iso_or_equiv 92.11 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 1467 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 245 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #