data_5FTC # _model_server_result.job_id q-_chbD2euTlSOS4aQOlZw _model_server_result.datetime_utc '2024-12-02 06:11:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ftc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1432}' # _entry.id 5FTC # _exptl.entry_id 5FTC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5FTC _cell.length_a 67.173 _cell.length_b 74.032 _cell.length_c 109.153 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5FTC _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 21 A GLU 21 1_555 D CA CA . A CA 1434 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.014 ? metalc ? metalc2 A OG1 THR 35 A THR 35 1_555 C CA CA . A CA 1433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.6 ? metalc ? metalc3 A O GLY 134 A GLY 134 1_555 D CA CA . A CA 1434 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? metalc ? metalc4 B O2B ADP . A ADP 1432 1_555 C CA CA . A CA 1433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc5 C CA CA . A CA 1433 1_555 E O HOH . A HOH 2014 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.684 ? metalc ? metalc6 C CA CA . A CA 1433 1_555 E O HOH . A HOH 2015 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc7 C CA CA . A CA 1433 1_555 E O HOH . A HOH 2016 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc8 C CA CA . A CA 1433 1_555 E O HOH . A HOH 2029 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc9 C CA CA . A CA 1433 1_555 E O HOH . A HOH 2069 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.618 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 5FTC _atom_sites.fract_transf_matrix[1][1] 0.014887 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013508 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009161 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 1432 1432 ADP ADP . C 3 CA A 1 1433 1433 CA CA . D 3 CA A 1 1434 1434 CA CA . E 4 HOH A 1 2001 2001 HOH HOH . E 4 HOH A 2 2002 2002 HOH HOH . E 4 HOH A 3 2003 2003 HOH HOH . E 4 HOH A 4 2004 2004 HOH HOH . E 4 HOH A 5 2005 2005 HOH HOH . E 4 HOH A 6 2006 2006 HOH HOH . E 4 HOH A 7 2007 2007 HOH HOH . E 4 HOH A 8 2008 2008 HOH HOH . E 4 HOH A 9 2009 2009 HOH HOH . E 4 HOH A 10 2010 2010 HOH HOH . E 4 HOH A 11 2011 2011 HOH HOH . E 4 HOH A 12 2012 2012 HOH HOH . E 4 HOH A 13 2013 2013 HOH HOH . E 4 HOH A 14 2014 2014 HOH HOH . E 4 HOH A 15 2015 2015 HOH HOH . E 4 HOH A 16 2016 2016 HOH HOH . E 4 HOH A 17 2017 2017 HOH HOH . E 4 HOH A 18 2018 2018 HOH HOH . E 4 HOH A 19 2019 2019 HOH HOH . E 4 HOH A 20 2020 2020 HOH HOH . E 4 HOH A 21 2021 2021 HOH HOH . E 4 HOH A 22 2022 2022 HOH HOH . E 4 HOH A 23 2023 2023 HOH HOH . E 4 HOH A 24 2024 2024 HOH HOH . E 4 HOH A 25 2025 2025 HOH HOH . E 4 HOH A 26 2026 2026 HOH HOH . E 4 HOH A 27 2027 2027 HOH HOH . E 4 HOH A 28 2028 2028 HOH HOH . E 4 HOH A 29 2029 2029 HOH HOH . E 4 HOH A 30 2030 2030 HOH HOH . E 4 HOH A 31 2031 2031 HOH HOH . E 4 HOH A 32 2032 2032 HOH HOH . E 4 HOH A 33 2033 2033 HOH HOH . E 4 HOH A 34 2034 2034 HOH HOH . E 4 HOH A 35 2035 2035 HOH HOH . E 4 HOH A 36 2036 2036 HOH HOH . E 4 HOH A 37 2037 2037 HOH HOH . E 4 HOH A 38 2038 2038 HOH HOH . E 4 HOH A 39 2039 2039 HOH HOH . E 4 HOH A 40 2040 2040 HOH HOH . E 4 HOH A 41 2041 2041 HOH HOH . E 4 HOH A 42 2042 2042 HOH HOH . E 4 HOH A 43 2043 2043 HOH HOH . E 4 HOH A 44 2044 2044 HOH HOH . E 4 HOH A 45 2045 2045 HOH HOH . E 4 HOH A 46 2046 2046 HOH HOH . E 4 HOH A 47 2047 2047 HOH HOH . E 4 HOH A 48 2048 2048 HOH HOH . E 4 HOH A 49 2049 2049 HOH HOH . E 4 HOH A 50 2050 2050 HOH HOH . E 4 HOH A 51 2051 2051 HOH HOH . E 4 HOH A 52 2052 2052 HOH HOH . E 4 HOH A 53 2053 2053 HOH HOH . E 4 HOH A 54 2054 2054 HOH HOH . E 4 HOH A 55 2055 2055 HOH HOH . E 4 HOH A 56 2056 2056 HOH HOH . E 4 HOH A 57 2057 2057 HOH HOH . E 4 HOH A 58 2058 2058 HOH HOH . E 4 HOH A 59 2059 2059 HOH HOH . E 4 HOH A 60 2060 2060 HOH HOH . E 4 HOH A 61 2061 2061 HOH HOH . E 4 HOH A 62 2062 2062 HOH HOH . E 4 HOH A 63 2063 2063 HOH HOH . E 4 HOH A 64 2064 2064 HOH HOH . E 4 HOH A 65 2065 2065 HOH HOH . E 4 HOH A 66 2066 2066 HOH HOH . E 4 HOH A 67 2067 2067 HOH HOH . E 4 HOH A 68 2068 2068 HOH HOH . E 4 HOH A 69 2069 2069 HOH HOH . E 4 HOH A 70 2070 2070 HOH HOH . E 4 HOH A 71 2071 2071 HOH HOH . E 4 HOH A 72 2072 2072 HOH HOH . E 4 HOH A 73 2073 2073 HOH HOH . E 4 HOH A 74 2074 2074 HOH HOH . E 4 HOH A 75 2075 2075 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . B 2 -25.421 1.054 21.3 1 53 ? PB ADP 1432 A 1 HETATM 2 O O1B ADP . . . B 2 -25.342 1.529 19.861 1 64.37 ? O1B ADP 1432 A 1 HETATM 3 O O2B ADP . . . B 2 -26.632 0.246 21.63 1 49.3 ? O2B ADP 1432 A 1 HETATM 4 O O3B ADP . . . B 2 -24.159 0.374 21.789 1 57.6 ? O3B ADP 1432 A 1 HETATM 5 P PA ADP . . . B 2 -26.029 2.728 23.639 1 51.8 ? PA ADP 1432 A 1 HETATM 6 O O1A ADP . . . B 2 -25.818 1.468 24.434 1 48.08 ? O1A ADP 1432 A 1 HETATM 7 O O2A ADP . . . B 2 -27.393 3.374 23.577 1 53.05 ? O2A ADP 1432 A 1 HETATM 8 O O3A ADP . . . B 2 -25.545 2.464 22.104 1 52.56 ? O3A ADP 1432 A 1 HETATM 9 O O5' ADP . . . B 2 -24.936 3.808 24.141 1 62.78 ? O5' ADP 1432 A 1 HETATM 10 C C5' ADP . . . B 2 -24.285 3.611 25.397 1 76.02 ? C5' ADP 1432 A 1 HETATM 11 C C4' ADP . . . B 2 -23.447 4.824 25.796 1 78.29 ? C4' ADP 1432 A 1 HETATM 12 O O4' ADP . . . B 2 -23.67 5.92 24.894 1 66.9 ? O4' ADP 1432 A 1 HETATM 13 C C3' ADP . . . B 2 -23.825 5.299 27.19 1 74.97 ? C3' ADP 1432 A 1 HETATM 14 O O3' ADP . . . B 2 -22.667 5.841 27.847 1 70.99 ? O3' ADP 1432 A 1 HETATM 15 C C2' ADP . . . B 2 -24.868 6.354 26.898 1 71.48 ? C2' ADP 1432 A 1 HETATM 16 O O2' ADP . . . B 2 -24.949 7.33 27.938 1 83.72 ? O2' ADP 1432 A 1 HETATM 17 C C1' ADP . . . B 2 -24.369 6.961 25.589 1 68.41 ? C1' ADP 1432 A 1 HETATM 18 N N9 ADP . . . B 2 -25.478 7.5 24.767 1 67.39 ? N9 ADP 1432 A 1 HETATM 19 C C8 ADP . . . B 2 -26.267 6.774 23.949 1 70.92 ? C8 ADP 1432 A 1 HETATM 20 N N7 ADP . . . B 2 -27.184 7.557 23.331 1 67.31 ? N7 ADP 1432 A 1 HETATM 21 C C5 ADP . . . B 2 -26.978 8.812 23.756 1 67.73 ? C5 ADP 1432 A 1 HETATM 22 C C6 ADP . . . B 2 -27.599 10.122 23.489 1 63.41 ? C6 ADP 1432 A 1 HETATM 23 N N6 ADP . . . B 2 -28.631 10.205 22.631 1 60.25 ? N6 ADP 1432 A 1 HETATM 24 N N1 ADP . . . B 2 -27.111 11.205 24.14 1 63.48 ? N1 ADP 1432 A 1 HETATM 25 C C2 ADP . . . B 2 -26.069 11.109 24.999 1 60.95 ? C2 ADP 1432 A 1 HETATM 26 N N3 ADP . . . B 2 -25.46 9.943 25.283 1 63.29 ? N3 ADP 1432 A 1 HETATM 27 C C4 ADP . . . B 2 -25.854 8.78 24.705 1 65.15 ? C4 ADP 1432 A 1 HETATM 28 H "H5'1" ADP . . . B 2 -23.641 2.731 25.336 1 91.22 ? "H5'1" ADP 1432 A 1 HETATM 29 H "H5'2" ADP . . . B 2 -25.035 3.421 26.167 1 91.22 ? "H5'2" ADP 1432 A 1 HETATM 30 H H4' ADP . . . B 2 -22.385 4.542 25.791 1 93.95 ? H4' ADP 1432 A 1 HETATM 31 H H3' ADP . . . B 2 -24.268 4.474 27.765 1 89.97 ? H3' ADP 1432 A 1 HETATM 32 H HO3' ADP . . . B 2 -22.911 6.141 28.733 1 85.19 ? HO3' ADP 1432 A 1 HETATM 33 H H2' ADP . . . B 2 -25.843 5.874 26.734 1 85.77 ? H2' ADP 1432 A 1 HETATM 34 H HO2' ADP . . . B 2 -25.206 6.9 28.765 1 100.46 ? HO2' ADP 1432 A 1 HETATM 35 H H1' ADP . . . B 2 -23.667 7.771 25.831 1 82.09 ? H1' ADP 1432 A 1 HETATM 36 H H8 ADP . . . B 2 -26.178 5.705 23.802 1 85.11 ? H8 ADP 1432 A 1 HETATM 37 H HN61 ADP . . . B 2 -28.974 9.373 22.173 1 72.3 ? HN61 ADP 1432 A 1 HETATM 38 H HN62 ADP . . . B 2 -29.065 11.098 22.449 1 72.3 ? HN62 ADP 1432 A 1 HETATM 39 H H2 ADP . . . B 2 -25.715 12.009 25.485 1 73.14 ? H2 ADP 1432 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 368 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 39 #