data_5FTE # _model_server_result.job_id C7Oz4Hf6a7Exav1R6fwGAw _model_server_result.datetime_utc '2024-11-22 19:35:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5fte # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1432}' # _entry.id 5FTE # _exptl.entry_id 5FTE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5FTE _cell.length_a 86.743 _cell.length_b 86.743 _cell.length_c 149.222 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5FTE _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 35 A THR 35 1_555 E MG MG . A MG 1434 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.737 ? metalc ? metalc2 A OE1 GLU 106 A GLU 106 1_555 E MG MG . A MG 1434 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.795 ? metalc ? metalc3 C O1B ADP . A ADP 1432 1_555 D AL AF3 . A AF3 1433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.876 ? metalc ? metalc4 C O3B ADP . A ADP 1432 1_555 E MG MG . A MG 1434 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc5 D AL AF3 . A AF3 1433 1_555 E MG MG . A MG 1434 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.627 ? metalc ? metalc6 D F2 AF3 . A AF3 1433 1_555 E MG MG . A MG 1434 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.938 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 5FTE _atom_sites.fract_transf_matrix[1][1] 0.011528 _atom_sites.fract_transf_matrix[1][2] 0.006656 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013312 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006701 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ADP A 1 1432 1432 ADP ADP . D 4 AF3 A 1 1433 1433 AF3 AF3 . E 5 MG A 1 1434 1434 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . C 3 -24.297 9.171 145.546 1 103.28 ? PB ADP 1432 A 1 HETATM 2 O O1B ADP . . . C 3 -23.575 10.512 145.286 1 99.81 ? O1B ADP 1432 A 1 HETATM 3 O O2B ADP . . . C 3 -23.239 8.067 145.94 1 104.61 ? O2B ADP 1432 A 1 HETATM 4 O O3B ADP . . . C 3 -25.306 9.361 146.703 1 94.61 ? O3B ADP 1432 A 1 HETATM 5 P PA ADP . . . C 3 -25.999 7.327 144.096 1 94.81 ? PA ADP 1432 A 1 HETATM 6 O O1A ADP . . . C 3 -27.429 7.658 144.422 1 89.4 ? O1A ADP 1432 A 1 HETATM 7 O O2A ADP . . . C 3 -25.506 6.354 145.059 1 93.65 ? O2A ADP 1432 A 1 HETATM 8 O O3A ADP . . . C 3 -25.074 8.693 144.19 1 111.69 ? O3A ADP 1432 A 1 HETATM 9 O O5' ADP . . . C 3 -25.901 6.699 142.564 1 96.47 ? O5' ADP 1432 A 1 HETATM 10 C C5' ADP . . . C 3 -26.096 7.516 141.506 1 107.97 ? C5' ADP 1432 A 1 HETATM 11 C C4' ADP . . . C 3 -25.779 6.722 140.137 1 115.74 ? C4' ADP 1432 A 1 HETATM 12 O O4' ADP . . . C 3 -24.7 6.007 140.267 1 114.8 ? O4' ADP 1432 A 1 HETATM 13 C C3' ADP . . . C 3 -26.917 5.749 139.817 1 118.88 ? C3' ADP 1432 A 1 HETATM 14 O O3' ADP . . . C 3 -27.209 5.78 138.453 1 122.17 ? O3' ADP 1432 A 1 HETATM 15 C C2' ADP . . . C 3 -26.37 4.377 140.203 1 119.31 ? C2' ADP 1432 A 1 HETATM 16 O O2' ADP . . . C 3 -26.969 3.295 139.294 1 124.9 ? O2' ADP 1432 A 1 HETATM 17 C C1' ADP . . . C 3 -25.089 4.47 140.019 1 114.5 ? C1' ADP 1432 A 1 HETATM 18 N N9 ADP . . . C 3 -24.376 3.627 140.986 1 116.44 ? N9 ADP 1432 A 1 HETATM 19 C C8 ADP . . . C 3 -24.069 3.984 142.26 1 119.98 ? C8 ADP 1432 A 1 HETATM 20 N N7 ADP . . . C 3 -23.421 2.959 142.835 1 125.57 ? N7 ADP 1432 A 1 HETATM 21 C C5 ADP . . . C 3 -23.321 1.954 141.916 1 127.89 ? C5 ADP 1432 A 1 HETATM 22 C C6 ADP . . . C 3 -22.755 0.702 141.993 1 127.8 ? C6 ADP 1432 A 1 HETATM 23 N N6 ADP . . . C 3 -22.069 -0.02 143.033 1 125.27 ? N6 ADP 1432 A 1 HETATM 24 N N1 ADP . . . C 3 -22.79 -0.107 140.932 1 127.64 ? N1 ADP 1432 A 1 HETATM 25 C C2 ADP . . . C 3 -23.384 0.306 139.782 1 131 ? C2 ADP 1432 A 1 HETATM 26 N N3 ADP . . . C 3 -23.944 1.549 139.709 1 132.99 ? N3 ADP 1432 A 1 HETATM 27 C C4 ADP . . . C 3 -23.908 2.366 140.78 1 126.37 ? C4 ADP 1432 A 1 # _model_server_stats.io_time_ms 81 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #