data_5FTF # _model_server_result.job_id eIJSZvPQldH-X0iSg9Uirw _model_server_result.datetime_utc '2024-12-02 06:27:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ftf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1432}' # _entry.id 5FTF # _exptl.entry_id 5FTF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5FTF _cell.length_a 67.708 _cell.length_b 73.482 _cell.length_c 108.648 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5FTF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 95 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 95 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 339 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 339 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.075 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 5FTF _atom_sites.fract_transf_matrix[1][1] 0.014769 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013609 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009204 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 1432 1432 ADP ADP . C 3 HOH A 1 2001 2001 HOH HOH . C 3 HOH A 2 2002 2002 HOH HOH . C 3 HOH A 3 2003 2003 HOH HOH . C 3 HOH A 4 2004 2004 HOH HOH . C 3 HOH A 5 2005 2005 HOH HOH . C 3 HOH A 6 2006 2006 HOH HOH . C 3 HOH A 7 2007 2007 HOH HOH . C 3 HOH A 8 2008 2008 HOH HOH . C 3 HOH A 9 2009 2009 HOH HOH . C 3 HOH A 10 2010 2010 HOH HOH . C 3 HOH A 11 2011 2011 HOH HOH . C 3 HOH A 12 2012 2012 HOH HOH . C 3 HOH A 13 2013 2013 HOH HOH . C 3 HOH A 14 2014 2014 HOH HOH . C 3 HOH A 15 2015 2015 HOH HOH . C 3 HOH A 16 2016 2016 HOH HOH . C 3 HOH A 17 2017 2017 HOH HOH . C 3 HOH A 18 2018 2018 HOH HOH . C 3 HOH A 19 2019 2019 HOH HOH . C 3 HOH A 20 2020 2020 HOH HOH . C 3 HOH A 21 2021 2021 HOH HOH . C 3 HOH A 22 2022 2022 HOH HOH . C 3 HOH A 23 2023 2023 HOH HOH . C 3 HOH A 24 2024 2024 HOH HOH . C 3 HOH A 25 2025 2025 HOH HOH . C 3 HOH A 26 2026 2026 HOH HOH . C 3 HOH A 27 2027 2027 HOH HOH . C 3 HOH A 28 2028 2028 HOH HOH . C 3 HOH A 29 2029 2029 HOH HOH . C 3 HOH A 30 2030 2030 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . B 2 25.517 1.126 -21.549 1 85.09 ? PB ADP 1432 A 1 HETATM 2 O O1B ADP . . . B 2 25.702 1.694 -20.149 1 70.07 ? O1B ADP 1432 A 1 HETATM 3 O O2B ADP . . . B 2 26.656 0.241 -22.005 1 70.85 ? O2B ADP 1432 A 1 HETATM 4 O O3B ADP . . . B 2 24.165 0.481 -21.77 1 71.95 ? O3B ADP 1432 A 1 HETATM 5 P PA ADP . . . B 2 26.416 2.576 -23.925 1 85.21 ? PA ADP 1432 A 1 HETATM 6 O O1A ADP . . . B 2 27.025 1.263 -24.347 1 82.13 ? O1A ADP 1432 A 1 HETATM 7 O O2A ADP . . . B 2 27.406 3.702 -23.724 1 65.27 ? O2A ADP 1432 A 1 HETATM 8 O O3A ADP . . . B 2 25.502 2.409 -22.572 1 78.06 ? O3A ADP 1432 A 1 HETATM 9 O O5' ADP . . . B 2 25.317 2.925 -25.091 1 85.39 ? O5' ADP 1432 A 1 HETATM 10 C C5' ADP . . . B 2 24.137 3.723 -24.882 1 72.87 ? C5' ADP 1432 A 1 HETATM 11 C C4' ADP . . . B 2 23.906 4.8 -25.97 1 84.13 ? C4' ADP 1432 A 1 HETATM 12 O O4' ADP . . . B 2 23.734 6.089 -25.354 1 82.27 ? O4' ADP 1432 A 1 HETATM 13 C C3' ADP . . . B 2 25.012 4.972 -27.022 1 86.54 ? C3' ADP 1432 A 1 HETATM 14 O O3' ADP . . . B 2 24.655 4.308 -28.249 1 100.01 ? O3' ADP 1432 A 1 HETATM 15 C C2' ADP . . . B 2 25.191 6.47 -27.234 1 78.35 ? C2' ADP 1432 A 1 HETATM 16 O O2' ADP . . . B 2 24.572 6.93 -28.446 1 83.64 ? O2' ADP 1432 A 1 HETATM 17 C C1' ADP . . . B 2 24.534 7.093 -25.998 1 76.87 ? C1' ADP 1432 A 1 HETATM 18 N N9 ADP . . . B 2 25.613 7.511 -25.064 1 78.52 ? N9 ADP 1432 A 1 HETATM 19 C C8 ADP . . . B 2 26.286 6.623 -24.307 1 80.61 ? C8 ADP 1432 A 1 HETATM 20 N N7 ADP . . . B 2 27.248 7.225 -23.556 1 74.67 ? N7 ADP 1432 A 1 HETATM 21 C C5 ADP . . . B 2 27.213 8.538 -23.839 1 75.77 ? C5 ADP 1432 A 1 HETATM 22 C C6 ADP . . . B 2 27.972 9.717 -23.352 1 67.8 ? C6 ADP 1432 A 1 HETATM 23 N N6 ADP . . . B 2 28.957 9.548 -22.422 1 68.51 ? N6 ADP 1432 A 1 HETATM 24 N N1 ADP . . . B 2 27.633 10.915 -23.897 1 60.89 ? N1 ADP 1432 A 1 HETATM 25 C C2 ADP . . . B 2 26.648 11.026 -24.812 1 67.64 ? C2 ADP 1432 A 1 HETATM 26 N N3 ADP . . . B 2 25.907 9.992 -25.278 1 74.98 ? N3 ADP 1432 A 1 HETATM 27 C C4 ADP . . . B 2 26.137 8.732 -24.838 1 79.71 ? C4 ADP 1432 A 1 HETATM 28 H "H5'1" ADP . . . B 2 24.211 4.214 -23.91 1 87.44 ? "H5'1" ADP 1432 A 1 HETATM 29 H "H5'2" ADP . . . B 2 23.267 3.064 -24.848 1 87.44 ? "H5'2" ADP 1432 A 1 HETATM 30 H H4' ADP . . . B 2 22.982 4.539 -26.503 1 100.96 ? H4' ADP 1432 A 1 HETATM 31 H H3' ADP . . . B 2 25.948 4.554 -26.626 1 103.85 ? H3' ADP 1432 A 1 HETATM 32 H HO3' ADP . . . B 2 25.362 4.428 -28.898 1 120.01 ? HO3' ADP 1432 A 1 HETATM 33 H H2' ADP . . . B 2 26.263 6.71 -27.234 1 94.02 ? H2' ADP 1432 A 1 HETATM 34 H HO2' ADP . . . B 2 24.98 6.49 -29.204 1 100.37 ? HO2' ADP 1432 A 1 HETATM 35 H H1' ADP . . . B 2 23.919 7.953 -26.297 1 92.24 ? H1' ADP 1432 A 1 HETATM 36 H H8 ADP . . . B 2 26.082 5.559 -24.293 1 96.74 ? H8 ADP 1432 A 1 HETATM 37 H HN61 ADP . . . B 2 29.164 8.625 -22.067 1 82.22 ? HN61 ADP 1432 A 1 HETATM 38 H HN62 ADP . . . B 2 29.486 10.345 -22.097 1 82.22 ? HN62 ADP 1432 A 1 HETATM 39 H H2 ADP . . . B 2 26.426 12.015 -25.194 1 81.17 ? H2 ADP 1432 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 359 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 39 #