data_5FTH # _model_server_result.job_id 2H9nssgZDFfDuqmzw-c6Wg _model_server_result.datetime_utc '2024-12-01 18:41:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5fth # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":900}' # _entry.id 5FTH # _exptl.entry_id 5FTH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 147.129 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'GLUTAMIC ACID' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5FTH _cell.length_a 46.375 _cell.length_b 110.523 _cell.length_c 167.245 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5FTH _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 2 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,D,E,F,G,H,I 1 1 C,J,K 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_558 x,-y,-z+3 1 0 0 0 -1 0 0 0 -1 0 0 501.735 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 G N N ? 2 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 234 A CYS 718 1_555 A SG CYS 289 A CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 B SG CYS 234 B CYS 718 1_555 B SG CYS 289 B CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 C SG CYS 234 C CYS 718 1_555 C SG CYS 289 C CYS 773 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc1 A NE2 HIS 51 A HIS 412 1_555 E ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc2 A OE1 GLU 70 A GLU 431 1_555 F ZN ZN . A ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? metalc ? metalc3 A NE2 HIS 74 A HIS 435 1_555 F ZN ZN . A ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc4 E ZN ZN . A ZN 901 1_555 B OD2 ASP 93 B ASP 454 3_657 ? ? ? ? ? ? ? ? ? ? ? ? 1.906 ? metalc ? metalc5 F ZN ZN . A ZN 902 1_555 C OE1 GLU 194 C GLU 678 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc6 B NE2 HIS 51 B HIS 412 1_555 H ZN ZN . B ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc7 B OE1 GLU 70 B GLU 431 1_555 I ZN ZN . B ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? metalc ? metalc8 B NE2 HIS 74 B HIS 435 1_555 I ZN ZN . B ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc9 H ZN ZN . B ZN 901 1_555 C NZ LYS 48 C LYS 409 3_647 ? ? ? ? ? ? ? ? ? ? ? ? 2.664 ? metalc ? metalc10 H ZN ZN . B ZN 901 1_555 C OE2 GLU 58 C GLU 419 3_647 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc11 C OE1 GLU 70 C GLU 431 1_555 K ZN ZN . C ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? metalc ? metalc12 C NE2 HIS 74 C HIS 435 1_555 K ZN ZN . C ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? # _chem_comp.formula 'C5 H9 N O4' _chem_comp.formula_weight 147.129 _chem_comp.id GLU _chem_comp.mon_nstd_flag y _chem_comp.name 'GLUTAMIC ACID' _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA GLU sing 102 n n N H GLU sing 103 n n N H2 GLU sing 104 n n CA C GLU sing 105 n n CA CB GLU sing 106 n n CA HA GLU sing 107 n n C O GLU doub 108 n n C OXT GLU sing 109 n n CB CG GLU sing 110 n n CB HB2 GLU sing 111 n n CB HB3 GLU sing 112 n n CG CD GLU sing 113 n n CG HG2 GLU sing 114 n n CG HG3 GLU sing 115 n n CD OE1 GLU doub 116 n n CD OE2 GLU sing 117 n n OE2 HE2 GLU sing 118 n n OXT HXT GLU sing 119 n n # _atom_sites.entry_id 5FTH _atom_sites.fract_transf_matrix[1][1] 0.021563 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009048 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005979 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 GLU A 1 900 900 GLU GLU . E 3 ZN A 1 901 901 ZN ZN . F 3 ZN A 1 902 902 ZN ZN . G 2 GLU B 1 900 900 GLU GLU . H 3 ZN B 1 901 901 ZN ZN . I 3 ZN B 1 902 902 ZN ZN . J 2 GLU C 1 900 900 GLU GLU . K 3 ZN C 1 902 902 ZN ZN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N GLU . . . J 2 25.471 6.927 237.829 1 89.8 ? N GLU 900 C 1 HETATM 2 C CA GLU . . . J 2 25.785 6.289 236.553 1 89.54 ? CA GLU 900 C 1 HETATM 3 C C GLU . . . J 2 27.281 6.02 236.413 1 87.63 ? C GLU 900 C 1 HETATM 4 O O GLU . . . J 2 28.071 6.295 237.324 1 88.38 ? O GLU 900 C 1 HETATM 5 C CB GLU . . . J 2 25.299 7.151 235.388 1 85.86 ? CB GLU 900 C 1 HETATM 6 C CG GLU . . . J 2 23.791 7.136 235.177 1 84.6 ? CG GLU 900 C 1 HETATM 7 C CD GLU . . . J 2 23.299 5.867 234.5 1 89.97 ? CD GLU 900 C 1 HETATM 8 O OE1 GLU . . . J 2 24.145 5.119 233.949 1 87.43 ? OE1 GLU 900 C 1 HETATM 9 O OE2 GLU . . . J 2 22.061 5.633 234.504 1 90.79 ? OE2 GLU 900 C 1 HETATM 10 O OXT GLU . . . J 2 27.727 5.505 235.388 1 74.07 ? OXT GLU 900 C 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #