data_5FTJ
#
_model_server_result.job_id            -OfXFqGjB4YBzqKYohTB6A 
_model_server_result.datetime_utc      '2024-11-08 04:07:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ftj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":900}' 
#
_entry.id    5FTJ 
#
_exptl.entry_id    5FTJ 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    12 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5FTJ 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5FTJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 H N N 
? 2 J N N 
? 2 K N N 
? 2 M N N 
? 2 N N N 
? 2 P N N 
? 2 Q N N 
? 2 S N N 
? 2 T N N 
? 2 V N N 
? 2 W N N 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     5FTJ 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 ADP A 1 807 807 ADP ADP . 
H 2 ADP A 1 900 900 ADP ADP . 
I 3 OJA A 1 1001 1001 OJA OJA . 
J 2 ADP B 1 807 807 ADP ADP . 
K 2 ADP B 1 900 900 ADP ADP . 
L 3 OJA B 1 1001 1001 OJA OJA . 
M 2 ADP C 1 807 807 ADP ADP . 
N 2 ADP C 1 900 900 ADP ADP . 
O 3 OJA C 1 1001 1001 OJA OJA . 
P 2 ADP D 1 807 807 ADP ADP . 
Q 2 ADP D 1 900 900 ADP ADP . 
R 3 OJA D 1 1001 1001 OJA OJA . 
S 2 ADP E 1 807 807 ADP ADP . 
T 2 ADP E 1 900 900 ADP ADP . 
U 3 OJA E 1 1001 1001 OJA OJA . 
V 2 ADP F 1 807 807 ADP ADP . 
W 2 ADP F 1 900 900 ADP ADP . 
X 3 OJA F 1 1001 1001 OJA OJA . 
Y 4 HOH A 1 2001 2001 HOH HOH . 
Y 4 HOH A 2 2002 2002 HOH HOH . 
Y 4 HOH A 3 2003 2003 HOH HOH . 
Y 4 HOH A 4 2004 2004 HOH HOH . 
Y 4 HOH A 5 2005 2005 HOH HOH . 
Y 4 HOH A 6 2006 2006 HOH HOH . 
Y 4 HOH A 7 2007 2007 HOH HOH . 
Y 4 HOH A 8 2008 2008 HOH HOH . 
Y 4 HOH A 9 2009 2009 HOH HOH . 
Y 4 HOH A 10 2010 2010 HOH HOH . 
Y 4 HOH A 11 2011 2011 HOH HOH . 
Y 4 HOH A 12 2012 2012 HOH HOH . 
Y 4 HOH A 13 2013 2013 HOH HOH . 
Y 4 HOH A 14 2014 2014 HOH HOH . 
Y 4 HOH A 15 2015 2015 HOH HOH . 
Y 4 HOH A 16 2016 2016 HOH HOH . 
Y 4 HOH A 17 2017 2017 HOH HOH . 
Y 4 HOH A 18 2018 2018 HOH HOH . 
Y 4 HOH A 19 2019 2019 HOH HOH . 
Y 4 HOH A 20 2020 2020 HOH HOH . 
Z 4 HOH B 1 2001 2001 HOH HOH . 
Z 4 HOH B 2 2002 2002 HOH HOH . 
Z 4 HOH B 3 2003 2003 HOH HOH . 
Z 4 HOH B 4 2004 2004 HOH HOH . 
Z 4 HOH B 5 2005 2005 HOH HOH . 
Z 4 HOH B 6 2006 2006 HOH HOH . 
Z 4 HOH B 7 2007 2007 HOH HOH . 
Z 4 HOH B 8 2008 2008 HOH HOH . 
Z 4 HOH B 9 2009 2009 HOH HOH . 
Z 4 HOH B 10 2010 2010 HOH HOH . 
Z 4 HOH B 11 2011 2011 HOH HOH . 
Z 4 HOH B 12 2012 2012 HOH HOH . 
Z 4 HOH B 13 2013 2013 HOH HOH . 
Z 4 HOH B 14 2014 2014 HOH HOH . 
Z 4 HOH B 15 2015 2015 HOH HOH . 
Z 4 HOH B 16 2016 2016 HOH HOH . 
Z 4 HOH B 17 2017 2017 HOH HOH . 
Z 4 HOH B 18 2018 2018 HOH HOH . 
Z 4 HOH B 19 2019 2019 HOH HOH . 
Z 4 HOH B 20 2020 2020 HOH HOH . 
AA 4 HOH C 1 2001 2001 HOH HOH . 
AA 4 HOH C 2 2002 2002 HOH HOH . 
AA 4 HOH C 3 2003 2003 HOH HOH . 
AA 4 HOH C 4 2004 2004 HOH HOH . 
AA 4 HOH C 5 2005 2005 HOH HOH . 
AA 4 HOH C 6 2006 2006 HOH HOH . 
AA 4 HOH C 7 2007 2007 HOH HOH . 
AA 4 HOH C 8 2008 2008 HOH HOH . 
AA 4 HOH C 9 2009 2009 HOH HOH . 
AA 4 HOH C 10 2010 2010 HOH HOH . 
AA 4 HOH C 11 2011 2011 HOH HOH . 
AA 4 HOH C 12 2012 2012 HOH HOH . 
AA 4 HOH C 13 2013 2013 HOH HOH . 
AA 4 HOH C 14 2014 2014 HOH HOH . 
AA 4 HOH C 15 2015 2015 HOH HOH . 
AA 4 HOH C 16 2016 2016 HOH HOH . 
AA 4 HOH C 17 2017 2017 HOH HOH . 
AA 4 HOH C 18 2018 2018 HOH HOH . 
AA 4 HOH C 19 2019 2019 HOH HOH . 
AA 4 HOH C 20 2020 2020 HOH HOH . 
BA 4 HOH D 1 2001 2001 HOH HOH . 
BA 4 HOH D 2 2002 2002 HOH HOH . 
BA 4 HOH D 3 2003 2003 HOH HOH . 
BA 4 HOH D 4 2004 2004 HOH HOH . 
BA 4 HOH D 5 2005 2005 HOH HOH . 
BA 4 HOH D 6 2006 2006 HOH HOH . 
BA 4 HOH D 7 2007 2007 HOH HOH . 
BA 4 HOH D 8 2008 2008 HOH HOH . 
BA 4 HOH D 9 2009 2009 HOH HOH . 
BA 4 HOH D 10 2010 2010 HOH HOH . 
BA 4 HOH D 11 2011 2011 HOH HOH . 
BA 4 HOH D 12 2012 2012 HOH HOH . 
BA 4 HOH D 13 2013 2013 HOH HOH . 
BA 4 HOH D 14 2014 2014 HOH HOH . 
BA 4 HOH D 15 2015 2015 HOH HOH . 
BA 4 HOH D 16 2016 2016 HOH HOH . 
BA 4 HOH D 17 2017 2017 HOH HOH . 
BA 4 HOH D 18 2018 2018 HOH HOH . 
BA 4 HOH D 19 2019 2019 HOH HOH . 
BA 4 HOH D 20 2020 2020 HOH HOH . 
CA 4 HOH E 1 2001 2001 HOH HOH . 
CA 4 HOH E 2 2002 2002 HOH HOH . 
CA 4 HOH E 3 2003 2003 HOH HOH . 
CA 4 HOH E 4 2004 2004 HOH HOH . 
CA 4 HOH E 5 2005 2005 HOH HOH . 
CA 4 HOH E 6 2006 2006 HOH HOH . 
CA 4 HOH E 7 2007 2007 HOH HOH . 
CA 4 HOH E 8 2008 2008 HOH HOH . 
CA 4 HOH E 9 2009 2009 HOH HOH . 
CA 4 HOH E 10 2010 2010 HOH HOH . 
CA 4 HOH E 11 2011 2011 HOH HOH . 
CA 4 HOH E 12 2012 2012 HOH HOH . 
CA 4 HOH E 13 2013 2013 HOH HOH . 
CA 4 HOH E 14 2014 2014 HOH HOH . 
CA 4 HOH E 15 2015 2015 HOH HOH . 
CA 4 HOH E 16 2016 2016 HOH HOH . 
CA 4 HOH E 17 2017 2017 HOH HOH . 
CA 4 HOH E 18 2018 2018 HOH HOH . 
CA 4 HOH E 19 2019 2019 HOH HOH . 
CA 4 HOH E 20 2020 2020 HOH HOH . 
DA 4 HOH F 1 2001 2001 HOH HOH . 
DA 4 HOH F 2 2002 2002 HOH HOH . 
DA 4 HOH F 3 2003 2003 HOH HOH . 
DA 4 HOH F 4 2004 2004 HOH HOH . 
DA 4 HOH F 5 2005 2005 HOH HOH . 
DA 4 HOH F 6 2006 2006 HOH HOH . 
DA 4 HOH F 7 2007 2007 HOH HOH . 
DA 4 HOH F 8 2008 2008 HOH HOH . 
DA 4 HOH F 9 2009 2009 HOH HOH . 
DA 4 HOH F 10 2010 2010 HOH HOH . 
DA 4 HOH F 11 2011 2011 HOH HOH . 
DA 4 HOH F 12 2012 2012 HOH HOH . 
DA 4 HOH F 13 2013 2013 HOH HOH . 
DA 4 HOH F 14 2014 2014 HOH HOH . 
DA 4 HOH F 15 2015 2015 HOH HOH . 
DA 4 HOH F 16 2016 2016 HOH HOH . 
DA 4 HOH F 17 2017 2017 HOH HOH . 
DA 4 HOH F 18 2018 2018 HOH HOH . 
DA 4 HOH F 19 2019 2019 HOH HOH . 
DA 4 HOH F 20 2020 2020 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . Q 2 129.089 81.29 130.17 1 88.34 ? PB ADP 900 D 1 
HETATM 2 O O1B ADP . . . Q 2 128.55 81.056 128.784 1 138.23 ? O1B ADP 900 D 1 
HETATM 3 O O2B ADP . . . Q 2 128.537 80.358 131.216 1 76.34 ? O2B ADP 900 D 1 
HETATM 4 O O3B ADP . . . Q 2 129.125 82.735 130.586 1 66.61 ? O3B ADP 900 D 1 
HETATM 5 P PA ADP . . . Q 2 131.606 81.374 128.893 1 69.39 ? PA ADP 900 D 1 
HETATM 6 O O1A ADP . . . Q 2 131.914 80.204 127.995 1 57.13 ? O1A ADP 900 D 1 
HETATM 7 O O2A ADP . . . Q 2 131.049 82.644 128.305 1 66.96 ? O2A ADP 900 D 1 
HETATM 8 O O3A ADP . . . Q 2 130.637 80.866 130.068 1 66.21 ? O3A ADP 900 D 1 
HETATM 9 O O5' ADP . . . Q 2 132.938 81.718 129.717 1 60.1 ? O5' ADP 900 D 1 
HETATM 10 C C5' ADP . . . Q 2 133.38 83.057 129.926 1 50.19 ? C5' ADP 900 D 1 
HETATM 11 C C4' ADP . . . Q 2 134.889 83.098 129.735 1 48.28 ? C4' ADP 900 D 1 
HETATM 12 O O4' ADP . . . Q 2 135.554 82.59 130.892 1 57.01 ? O4' ADP 900 D 1 
HETATM 13 C C3' ADP . . . Q 2 135.317 82.247 128.55 1 56.01 ? C3' ADP 900 D 1 
HETATM 14 O O3' ADP . . . Q 2 135.781 83.082 127.491 1 43.21 ? O3' ADP 900 D 1 
HETATM 15 C C2' ADP . . . Q 2 136.438 81.364 129.052 1 38.04 ? C2' ADP 900 D 1 
HETATM 16 O O2' ADP . . . Q 2 137.683 81.745 128.466 1 66.36 ? O2' ADP 900 D 1 
HETATM 17 C C1' ADP . . . Q 2 136.486 81.56 130.557 1 45.41 ? C1' ADP 900 D 1 
HETATM 18 N N9 ADP . . . Q 2 136.077 80.288 131.192 1 41.71 ? N9 ADP 900 D 1 
HETATM 19 C C8 ADP . . . Q 2 135 80.112 131.973 1 46.84 ? C8 ADP 900 D 1 
HETATM 20 N N7 ADP . . . Q 2 134.907 78.826 132.387 1 39.61 ? N7 ADP 900 D 1 
HETATM 21 C C5 ADP . . . Q 2 135.94 78.151 131.857 1 41.82 ? C5 ADP 900 D 1 
HETATM 22 C C6 ADP . . . Q 2 136.438 76.758 131.893 1 53.39 ? C6 ADP 900 D 1 
HETATM 23 N N6 ADP . . . Q 2 135.787 75.803 132.595 1 56.24 ? N6 ADP 900 D 1 
HETATM 24 N N1 ADP . . . Q 2 137.561 76.474 131.202 1 61.62 ? N1 ADP 900 D 1 
HETATM 25 C C2 ADP . . . Q 2 138.214 77.418 130.5 1 54.07 ? C2 ADP 900 D 1 
HETATM 26 N N3 ADP . . . Q 2 137.819 78.698 130.424 1 53.06 ? N3 ADP 900 D 1 
HETATM 27 C C4 ADP . . . Q 2 136.71 79.121 131.069 1 40.85 ? C4 ADP 900 D 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    42 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           27 
#