data_5FTK # _model_server_result.job_id eLndwB-_56TW6c4OKKU5WA _model_server_result.datetime_utc '2024-11-22 10:28:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5ftk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":807}' # _entry.id 5FTK # _exptl.entry_id 5FTK _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5FTK _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5FTK _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 R N N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 5FTK _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 ADP A 1 807 807 ADP ADP . H 2 ADP A 1 900 900 ADP ADP . I 2 ADP B 1 807 807 ADP ADP . J 2 ADP B 1 900 900 ADP ADP . K 2 ADP C 1 807 807 ADP ADP . L 2 ADP C 1 900 900 ADP ADP . M 2 ADP D 1 807 807 ADP ADP . N 2 ADP D 1 900 900 ADP ADP . O 2 ADP E 1 807 807 ADP ADP . P 2 ADP E 1 900 900 ADP ADP . Q 2 ADP F 1 807 807 ADP ADP . R 2 ADP F 1 900 900 ADP ADP . S 3 HOH A 1 1001 1001 HOH HOH . S 3 HOH A 2 1002 1002 HOH HOH . S 3 HOH A 3 1003 1003 HOH HOH . S 3 HOH A 4 1004 1004 HOH HOH . S 3 HOH A 5 1005 1005 HOH HOH . S 3 HOH A 6 1006 1006 HOH HOH . S 3 HOH A 7 1007 1007 HOH HOH . S 3 HOH A 8 1008 1008 HOH HOH . S 3 HOH A 9 1009 1009 HOH HOH . S 3 HOH A 10 1010 1010 HOH HOH . S 3 HOH A 11 1011 1011 HOH HOH . S 3 HOH A 12 1012 1012 HOH HOH . S 3 HOH A 13 1013 1013 HOH HOH . S 3 HOH A 14 1014 1014 HOH HOH . S 3 HOH A 15 1015 1015 HOH HOH . S 3 HOH A 16 1016 1016 HOH HOH . T 3 HOH B 1 1001 1001 HOH HOH . T 3 HOH B 2 1002 1002 HOH HOH . T 3 HOH B 3 1003 1003 HOH HOH . T 3 HOH B 4 1004 1004 HOH HOH . T 3 HOH B 5 1005 1005 HOH HOH . T 3 HOH B 6 1006 1006 HOH HOH . T 3 HOH B 7 1007 1007 HOH HOH . T 3 HOH B 8 1008 1008 HOH HOH . T 3 HOH B 9 1009 1009 HOH HOH . T 3 HOH B 10 1010 1010 HOH HOH . T 3 HOH B 11 1011 1011 HOH HOH . T 3 HOH B 12 1012 1012 HOH HOH . T 3 HOH B 13 1013 1013 HOH HOH . T 3 HOH B 14 1014 1014 HOH HOH . T 3 HOH B 15 1015 1015 HOH HOH . T 3 HOH B 16 1016 1016 HOH HOH . U 3 HOH C 1 1001 1001 HOH HOH . U 3 HOH C 2 1002 1002 HOH HOH . U 3 HOH C 3 1003 1003 HOH HOH . U 3 HOH C 4 1004 1004 HOH HOH . U 3 HOH C 5 1005 1005 HOH HOH . U 3 HOH C 6 1006 1006 HOH HOH . U 3 HOH C 7 1007 1007 HOH HOH . U 3 HOH C 8 1008 1008 HOH HOH . U 3 HOH C 9 1009 1009 HOH HOH . U 3 HOH C 10 1010 1010 HOH HOH . U 3 HOH C 11 1011 1011 HOH HOH . U 3 HOH C 12 1012 1012 HOH HOH . U 3 HOH C 13 1013 1013 HOH HOH . U 3 HOH C 14 1014 1014 HOH HOH . U 3 HOH C 15 1015 1015 HOH HOH . U 3 HOH C 16 1016 1016 HOH HOH . V 3 HOH D 1 1001 1001 HOH HOH . V 3 HOH D 2 1002 1002 HOH HOH . V 3 HOH D 3 1003 1003 HOH HOH . V 3 HOH D 4 1004 1004 HOH HOH . V 3 HOH D 5 1005 1005 HOH HOH . V 3 HOH D 6 1006 1006 HOH HOH . V 3 HOH D 7 1007 1007 HOH HOH . V 3 HOH D 8 1008 1008 HOH HOH . V 3 HOH D 9 1009 1009 HOH HOH . V 3 HOH D 10 1010 1010 HOH HOH . V 3 HOH D 11 1011 1011 HOH HOH . V 3 HOH D 12 1012 1012 HOH HOH . V 3 HOH D 13 1013 1013 HOH HOH . V 3 HOH D 14 1014 1014 HOH HOH . V 3 HOH D 15 1015 1015 HOH HOH . V 3 HOH D 16 1016 1016 HOH HOH . W 3 HOH E 1 1001 1001 HOH HOH . W 3 HOH E 2 1002 1002 HOH HOH . W 3 HOH E 3 1003 1003 HOH HOH . W 3 HOH E 4 1004 1004 HOH HOH . W 3 HOH E 5 1005 1005 HOH HOH . W 3 HOH E 6 1006 1006 HOH HOH . W 3 HOH E 7 1007 1007 HOH HOH . W 3 HOH E 8 1008 1008 HOH HOH . W 3 HOH E 9 1009 1009 HOH HOH . W 3 HOH E 10 1010 1010 HOH HOH . W 3 HOH E 11 1011 1011 HOH HOH . W 3 HOH E 12 1012 1012 HOH HOH . W 3 HOH E 13 1013 1013 HOH HOH . W 3 HOH E 14 1014 1014 HOH HOH . W 3 HOH E 15 1015 1015 HOH HOH . W 3 HOH E 16 1016 1016 HOH HOH . X 3 HOH F 1 1001 1001 HOH HOH . X 3 HOH F 2 1002 1002 HOH HOH . X 3 HOH F 3 1003 1003 HOH HOH . X 3 HOH F 4 1004 1004 HOH HOH . X 3 HOH F 5 1005 1005 HOH HOH . X 3 HOH F 6 1006 1006 HOH HOH . X 3 HOH F 7 1007 1007 HOH HOH . X 3 HOH F 8 1008 1008 HOH HOH . X 3 HOH F 9 1009 1009 HOH HOH . X 3 HOH F 10 1010 1010 HOH HOH . X 3 HOH F 11 1011 1011 HOH HOH . X 3 HOH F 12 1012 1012 HOH HOH . X 3 HOH F 13 1013 1013 HOH HOH . X 3 HOH F 14 1014 1014 HOH HOH . X 3 HOH F 15 1015 1015 HOH HOH . X 3 HOH F 16 1016 1016 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . K 2 126.958 117.064 93.03 1 86.06 ? PB ADP 807 C 1 HETATM 2 O O1B ADP . . . K 2 128.029 116.783 94.021 1 75.78 ? O1B ADP 807 C 1 HETATM 3 O O2B ADP . . . K 2 125.567 117.008 93.55 1 72.24 ? O2B ADP 807 C 1 HETATM 4 O O3B ADP . . . K 2 127.137 116.323 91.752 1 54.12 ? O3B ADP 807 C 1 HETATM 5 P PA ADP . . . K 2 128.054 119.148 91.488 1 84.86 ? PA ADP 807 C 1 HETATM 6 O O1A ADP . . . K 2 127.161 119.409 90.306 1 80.3 ? O1A ADP 807 C 1 HETATM 7 O O2A ADP . . . K 2 129.225 118.249 91.343 1 92.7 ? O2A ADP 807 C 1 HETATM 8 O O3A ADP . . . K 2 127.11 118.612 92.657 1 46.04 ? O3A ADP 807 C 1 HETATM 9 O O5' ADP . . . K 2 128.624 120.526 92.048 1 79.2 ? O5' ADP 807 C 1 HETATM 10 C C5' ADP . . . K 2 127.815 121.672 92.222 1 67.68 ? C5' ADP 807 C 1 HETATM 11 C C4' ADP . . . K 2 128.742 122.854 92.375 1 79.88 ? C4' ADP 807 C 1 HETATM 12 O O4' ADP . . . K 2 129.316 122.905 93.675 1 73.9 ? O4' ADP 807 C 1 HETATM 13 C C3' ADP . . . K 2 129.893 122.749 91.414 1 69.55 ? C3' ADP 807 C 1 HETATM 14 O O3' ADP . . . K 2 129.738 123.809 90.475 1 75.26 ? O3' ADP 807 C 1 HETATM 15 C C2' ADP . . . K 2 131.13 123.015 92.227 1 51.24 ? C2' ADP 807 C 1 HETATM 16 O O2' ADP . . . K 2 131.708 124.202 91.723 1 66.64 ? O2' ADP 807 C 1 HETATM 17 C C1' ADP . . . K 2 130.672 123.294 93.638 1 37.46 ? C1' ADP 807 C 1 HETATM 18 N N9 ADP . . . K 2 131.387 122.425 94.585 1 43.74 ? N9 ADP 807 C 1 HETATM 19 C C8 ADP . . . K 2 130.832 121.414 95.242 1 31.93 ? C8 ADP 807 C 1 HETATM 20 N N7 ADP . . . K 2 131.722 120.816 96.03 1 46.71 ? N7 ADP 807 C 1 HETATM 21 C C5 ADP . . . K 2 132.887 121.448 95.891 1 30.68 ? C5 ADP 807 C 1 HETATM 22 C C6 ADP . . . K 2 134.247 121.299 96.429 1 41.97 ? C6 ADP 807 C 1 HETATM 23 N N6 ADP . . . K 2 134.548 120.341 97.322 1 50.67 ? N6 ADP 807 C 1 HETATM 24 N N1 ADP . . . K 2 135.179 122.167 96.011 1 43.43 ? N1 ADP 807 C 1 HETATM 25 C C2 ADP . . . K 2 134.901 123.128 95.12 1 44.38 ? C2 ADP 807 C 1 HETATM 26 N N3 ADP . . . K 2 133.689 123.302 94.581 1 54.71 ? N3 ADP 807 C 1 HETATM 27 C C4 ADP . . . K 2 132.659 122.51 94.93 1 36.98 ? C4 ADP 807 C 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 27 #