data_5FTM
#
_model_server_result.job_id            t5TZWqd2i06vxlvSo1L3aQ 
_model_server_result.datetime_utc      '2024-11-08 03:01:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5ftm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":901}' 
#
_entry.id    5FTM 
#
_exptl.entry_id    5FTM 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              523.247 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5FTM 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5FTM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 J N N 
? 2 M N N 
? 2 P N N 
? 2 S N N 
? 2 V N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 525 A THR 525 1_555 I MG MG . A MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? 
metalc ? metalc2 G O3B AGS . A AGS 901 1_555 I MG MG . A MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? 
metalc ? metalc3 G O1A AGS . A AGS 901 1_555 I MG MG . A MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.561 ? 
metalc ? metalc4 B OG1 THR 525 B THR 525 1_555 L MG MG . B MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? 
metalc ? metalc5 J O1A AGS . B AGS 901 1_555 L MG MG . B MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.562 ? 
metalc ? metalc6 J O3B AGS . B AGS 901 1_555 L MG MG . B MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? 
metalc ? metalc7 C OG1 THR 525 C THR 525 1_555 O MG MG . C MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? 
metalc ? metalc8 M O1A AGS . C AGS 901 1_555 O MG MG . C MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.562 ? 
metalc ? metalc9 M O3B AGS . C AGS 901 1_555 O MG MG . C MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? 
metalc ? metalc10 D OG1 THR 525 D THR 525 1_555 R MG MG . D MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? 
metalc ? metalc11 P O3B AGS . D AGS 901 1_555 R MG MG . D MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? 
metalc ? metalc12 P O1A AGS . D AGS 901 1_555 R MG MG . D MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.56 ? 
metalc ? metalc13 E OG1 THR 525 E THR 525 1_555 U MG MG . E MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? 
metalc ? metalc14 S O1A AGS . E AGS 901 1_555 U MG MG . E MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.561 ? 
metalc ? metalc15 S O3B AGS . E AGS 901 1_555 U MG MG . E MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? 
metalc ? metalc16 F OG1 THR 525 F THR 525 1_555 X MG MG . F MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? 
metalc ? metalc17 V O1A AGS . F AGS 901 1_555 X MG MG . F MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.561 ? 
metalc ? metalc18 V O3B AGS . F AGS 901 1_555 X MG MG . F MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? 
#
_chem_comp.formula           'C10 H16 N5 O12 P3 S' 
_chem_comp.formula_weight    523.247 
_chem_comp.id                AGS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "ATP-GAMMA-S;ADENOSINE 5'-(3-THIOTRIPHOSPHATE);ADENOSINE 5'-(GAMMA-THIOTRIPHOSPHATE);ADENOSINE-5'-DIPHOSPHATE MONOTHIOPHOSPHATE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG S1G AGS doub 45 n n 
PG O2G AGS sing 46 n n 
PG O3G AGS sing 47 n n 
PG O3B AGS sing 48 n n 
PB O1B AGS doub 49 n n 
PB O2B AGS sing 50 n n 
PB O3B AGS sing 51 n n 
PB O3A AGS sing 52 n n 
PA O1A AGS doub 53 n n 
PA O2A AGS sing 54 n n 
PA O3A AGS sing 55 n n 
PA O5' AGS sing 56 n n 
O5' C5' AGS sing 57 n n 
C5' C4' AGS sing 58 n n 
C4' O4' AGS sing 59 n n 
C4' C3' AGS sing 60 n n 
O4' C1' AGS sing 61 n n 
C3' O3' AGS sing 62 n n 
C3' C2' AGS sing 63 n n 
C2' O2' AGS sing 64 n n 
C2' C1' AGS sing 65 n n 
C1' N9 AGS sing 66 n n 
N9 C8 AGS sing 67 n y 
N9 C4 AGS sing 68 n y 
C8 N7 AGS doub 69 n y 
N7 C5 AGS sing 70 n y 
C5 C6 AGS sing 71 n y 
C5 C4 AGS doub 72 n y 
C6 N6 AGS sing 73 n n 
C6 N1 AGS doub 74 n y 
N1 C2 AGS sing 75 n y 
C2 N3 AGS doub 76 n y 
N3 C4 AGS sing 77 n y 
O2G HOG2 AGS sing 78 n n 
O3G H21 AGS sing 79 n n 
O2B HOB2 AGS sing 80 n n 
O2A HOA2 AGS sing 81 n n 
C5' "H5'1" AGS sing 82 n n 
C5' "H5'2" AGS sing 83 n n 
C4' H4' AGS sing 84 n n 
C3' H3' AGS sing 85 n n 
O3' HO3' AGS sing 86 n n 
C2' H2' AGS sing 87 n n 
O2' HO2' AGS sing 88 n n 
C1' H1' AGS sing 89 n n 
C8 H8 AGS sing 90 n n 
N6 HN61 AGS sing 91 n n 
N6 HN62 AGS sing 92 n n 
C2 H2 AGS sing 93 n n 
#
_atom_sites.entry_id                     5FTM 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 AGS A 1 901 901 AGS AGS . 
H 3 ADP A 1 902 902 ADP ADP . 
I 4 MG A 1 903 903 MG MG . 
J 2 AGS B 1 901 901 AGS AGS . 
K 3 ADP B 1 902 902 ADP ADP . 
L 4 MG B 1 903 903 MG MG . 
M 2 AGS C 1 901 901 AGS AGS . 
N 3 ADP C 1 902 902 ADP ADP . 
O 4 MG C 1 903 903 MG MG . 
P 2 AGS D 1 901 901 AGS AGS . 
Q 3 ADP D 1 902 902 ADP ADP . 
R 4 MG D 1 903 903 MG MG . 
S 2 AGS E 1 901 901 AGS AGS . 
T 3 ADP E 1 902 902 ADP ADP . 
U 4 MG E 1 903 903 MG MG . 
V 2 AGS F 1 901 901 AGS AGS . 
W 3 ADP F 1 902 902 ADP ADP . 
X 4 MG F 1 903 903 MG MG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG AGS . . . J 2 90.103 124.588 124.072 1 60.52 ? PG AGS 901 B 1 
HETATM 2 S S1G AGS . . . J 2 90.839 122.855 124.939 1 49.91 ? S1G AGS 901 B 1 
HETATM 3 O O2G AGS . . . J 2 89.368 125.489 125.182 1 60.37 ? O2G AGS 901 B 1 
HETATM 4 O O3G AGS . . . J 2 89.129 124.242 123.016 1 47.6 ? O3G AGS 901 B 1 
HETATM 5 P PB AGS . . . J 2 92.561 125.912 124.315 1 41.87 ? PB AGS 901 B 1 
HETATM 6 O O1B AGS . . . J 2 93.832 125.686 123.538 1 39.12 ? O1B AGS 901 B 1 
HETATM 7 O O2B AGS . . . J 2 92.417 125.333 125.698 1 42.96 ? O2B AGS 901 B 1 
HETATM 8 O O3B AGS . . . J 2 91.325 125.404 123.419 1 46.28 ? O3B AGS 901 B 1 
HETATM 9 P PA AGS . . . J 2 91.895 128.327 123.08 1 44.61 ? PA AGS 901 B 1 
HETATM 10 O O1A AGS . . . J 2 91.874 127.384 121.905 1 46.14 ? O1A AGS 901 B 1 
HETATM 11 O O2A AGS . . . J 2 92.751 129.565 123.026 1 32.86 ? O2A AGS 901 B 1 
HETATM 12 O O3A AGS . . . J 2 92.299 127.495 124.396 1 41.38 ? O3A AGS 901 B 1 
HETATM 13 O O5' AGS . . . J 2 90.386 128.781 123.393 1 47.07 ? O5' AGS 901 B 1 
HETATM 14 C C5' AGS . . . J 2 89.656 129.544 122.436 1 42.34 ? C5' AGS 901 B 1 
HETATM 15 C C4' AGS . . . J 2 88.56 130.344 123.129 1 36.74 ? C4' AGS 901 B 1 
HETATM 16 O O4' AGS . . . J 2 88.833 130.459 124.527 1 36.44 ? O4' AGS 901 B 1 
HETATM 17 C C3' AGS . . . J 2 88.468 131.751 122.562 1 35.23 ? C3' AGS 901 B 1 
HETATM 18 O O3' AGS . . . J 2 87.222 131.926 121.885 1 34.98 ? O3' AGS 901 B 1 
HETATM 19 C C2' AGS . . . J 2 88.555 132.691 123.747 1 38.23 ? C2' AGS 901 B 1 
HETATM 20 O O2' AGS . . . J 2 87.337 133.428 123.875 1 45.15 ? O2' AGS 901 B 1 
HETATM 21 C C1' AGS . . . J 2 88.75 131.816 124.971 1 40.59 ? C1' AGS 901 B 1 
HETATM 22 N N9 AGS . . . J 2 90.004 132.2 125.666 1 35.44 ? N9 AGS 901 B 1 
HETATM 23 C C8 AGS . . . J 2 90.744 131.395 126.448 1 33.85 ? C8 AGS 901 B 1 
HETATM 24 N N7 AGS . . . J 2 91.828 132.048 126.935 1 31.3 ? N7 AGS 901 B 1 
HETATM 25 C C5 AGS . . . J 2 91.79 133.304 126.46 1 31.39 ? C5 AGS 901 B 1 
HETATM 26 C C6 AGS . . . J 2 92.631 134.517 126.583 1 37.64 ? C6 AGS 901 B 1 
HETATM 27 N N6 AGS . . . J 2 93.757 134.512 127.334 1 34.96 ? N6 AGS 901 B 1 
HETATM 28 N N1 AGS . . . J 2 92.237 135.626 125.922 1 44.18 ? N1 AGS 901 B 1 
HETATM 29 C C2 AGS . . . J 2 91.12 135.641 125.174 1 46.45 ? C2 AGS 901 B 1 
HETATM 30 N N3 AGS . . . J 2 90.311 134.578 125.018 1 36.17 ? N3 AGS 901 B 1 
HETATM 31 C C4 AGS . . . J 2 90.586 133.4 125.624 1 33.27 ? C4 AGS 901 B 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    63 
_model_server_stats.query_time_ms           260 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           31 
#